BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35250.1
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491124 jgi|Araly1|491124|fgenesh2_kg.7__557__AT4G35250.1 2039 0.0
> Ahg491124 jgi|Araly1|491124|fgenesh2_kg.7__557__AT4G35250.1
Length=1354
Score = 2039 bits (1104), Expect = 0.0
Identities = 1217/1272 (96%), Gaps = 6/1272 (0%)
Strand=Plus/Plus
Query 168 TCCTCCGGGCGTCTGTCTTGGCGACGTTCTCTCACACCGGAAAATACAATCCCGCTCTTC 227
|||||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 88 TCCTCCGGACGTCTCTCTTGGCGACGTTCTCTCACACCGGAAAATTCAATCTCGCTCTTC 147
Query 228 CCATCTTCCTCATCCTCATCCCTTAACCGGGAACGATCAATAGTAGTTCCGGTTACATGC 287
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 148 CCATCTTCCTCATCCTCATCCCTTAACCGGGAACGATTAATAGTAGTTCCGGTTACATGC 207
Query 288 AGTGCTGCAGCGGTTAATCTTGCTCCGGGGACACCAGTCCGACCCACGAGCATCTTGGTG 347
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 208 AGTGCGGCAGCGGTTAATCTTGCTCCGGGGACACCAGTCCGACCCACGAGTATCTTGGTG 267
Query 348 GTTGGAGCCACTGGAACTTTGGGAAGACAAATCGTCCGGAGAGCTTTAGATGAAGGGTAT 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 268 GTTGGAGCCACTGGAACTTTGGGAAGACAAATCGTCCGGAGAGCTTTAGATGAAGGTTAT 327
Query 408 GATGTTAGGTGTTTGGTCCGACCAAGACCAGCTCCCGCCGATTTCCTCCGTGATTGGGGC 467
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GATGTCAGGTGTTTGGTCAGACCAAGACCAGCTCCCGCCGATTTCCTCCGTGATTGGGGC 387
Query 468 GCCACCGTAGTCAATGCGGATCTTAGTAAACCGGAGACAATTCCGGCGACTTTGGTCGGG 527
|||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 388 GCCACCGTCGTCAATGCGGATCTTAGTAAACCAGAGACCATTCCAGCGACTTTGGTCGGA 447
Query 528 ATTCACACTGTAATTGATTGTGCCACGGGACGTCCTGAAGAACCTATCAAGACGGTAGAT 587
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 448 ATTCACACTGTAATTGATTGTGCCACGGGACGTCCTGAAGAACCCATCAAGACGGTAGAT 507
Query 588 TGGGAAGGAAAAGTTGCTCTGATACAATGTGCAAAGGCAATGGGGATTCAGAAATACGTC 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TGGGAAGGAAAAGTTGCTCTGATACAATGTGCAAAGGCAATGGGGATTCAGAAATACGTC 567
Query 648 TTTTACTCAATCCACAATTGCGATAAGCATCCTGAGGTTCCTCTCATGGAGATTAAGTAC 707
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 568 TTTTACTCAATCCACAATTGCGATAAGCATCCCGAGGTTCCTCTCATGGAGATTAAGTAT 627
Query 708 TGCACTGAGAAGTTTCTTCAGGAATCTGGTTTAAACCACATCACCATTCGGTTATGTGGT 767
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 628 TGTACTGAGAAGTTTCTTCAGGAATCTGGTTTAAACCACATCACCATCCGGTTATGTGGT 687
Query 768 TTCATGCAAGGTCTTATTGGTCAATATGCAGTTCCAATTCTGGAGGAGAAATCGGTTTGG 827
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 688 TTCATGCAAGGTCTTATTGGTCAATATGCAGTTCCAATTTTGGAGGAAAAATCGGTTTGG 747
Query 828 GGAACAGATGCACCAACGCGTGTTGCTTACATGGACACACAGGATATTGCTAGGCTGACA 887
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 748 GGAACAGATGCACCAACGCGTATTGCTTACATGGACACACAGGATATTGCTAGGCTAACA 807
Query 888 CTTATAGCTTTACGTAATGAGAAGATCAATGGAAAACTTCTGACTTTCGCTGGCCCTCGT 947
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 808 CTTATAGCTTTACGCAATGAGAAGATCAACGGAAAACTTCTGACATTCGCTGGCCCTCGT 867
Query 948 GCATGGACAACACAAGAAGTGATAACACTATGTGAGAGACTTGCTGGGCAAGATGCAAAT 1007
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 868 GCATGGACAACCCAGGAAGTAATAACACTATGTGAGAGACTTGCTGGGCAAGATGCAAAT 927
Query 1008 GTCACAACCGTTCCAGTTTCTGTATTGAGAGTCACGCGTCAGTTAACTCGGTTCTTTCAA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 928 GTCACAACCGTTCCAGTTTCTGTATTGAGAGTCACGCGTCAGTTAACTCGGTT-TTTCCA 986
Query 1068 -TGGACAAATGATGTCGCGGATAGACTGGCCTTCTCAGAGGTTCTCTCGAGTGACACGGT 1126
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 987 GTGGACAAATGATGTCGCGGATAGACTGGCCTTCTCAGAGGTTCTTTCGAGCGACACGGT 1046
Query 1127 CTTCTCTGCTCCGATGACTGAGACTAATAGTCTACTAGGTGTGGATCAGAAGGATATGGT 1186
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1047 CTTCTCTGTTCCGATGACTGAGACTAATAGTCTACTAGGTGTGGATCAGAAGGACATGGT 1106
Query 1187 GACTCTAGAGAAGTACTTGCAGGATTACTTCAGCAACATATTGAAGAAACTAAAGGATCT 1246
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GACTCTTGAAAAGTACTTGCAGGATTACTTCAGCAACATATTGAAGAAACTAAAGGATCT 1166
Query 1247 AAAGGCACAATCCAAGCAATCAGACATCTACTTCTGAGTTTCTGACCTTGTAGTGTCTTC 1306
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1167 AAAGGCACAATCCAAGCAATCAGACATCTACTTCTGAGTT-CTGACCTTGTGGTGTCTTG 1225
Query 1307 ATAAGATTCAACACTATTTATAAACTGCATTTGCAACCATACTGTGAGATTCGTTGTTGC 1366
|||||||||||||||||||| |||||||||||||| |||||||||||| | | ||||| |
Sbjct 1226 ATAAGATTCAACACTATTTAAAAACTGCATTTGCATCCATACTGTGAGCTCCATTGTTTC 1285
Query 1367 TCTGTTCTTCAATGGTTATTGTGCTTCTTCTTGTAATTAAAGAGAATTATTGTAATGTAA 1426
||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 1286 AATGTTCTTCAATGGCTACTGTGCTTCTTCTTGTAATTAAAGAGAATTAT---AATGTAA 1342
Query 1427 ATGTAGCTTGAG 1438
||||||||||||
Sbjct 1343 ATGTAGCTTGAG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5