BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35260.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944366 jgi|Araly1|944366|scaffold_700595.1 2025 0.0
Ahg480594 jgi|Araly1|480594|fgenesh2_kg.3__3295__AT2G17130.1 1046 0.0
Ahg923469 jgi|Araly1|923469|scaffold_104750.1 226 4e-58
> Ahg944366 jgi|Araly1|944366|scaffold_700595.1
Length=1240
Score = 2025 bits (1096), Expect = 0.0
Identities = 1205/1255 (96%), Gaps = 17/1255 (1%)
Strand=Plus/Plus
Query 74 CCCAAAATTGAAGA-CAAAAATGTCTCGCAGATCGCTAACTCTCCTCAAGAATCTAGCTA 132
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CCCAAAATTGCAGAGCAAAAATGTCTCGCAGATCGCTAACTCTCCTCAAGAATCTAGCTA 61
Query 133 GAAACGCGAATGGATCAGGTATTCAAACCCGATCCGTGACTTACATGCCCAGACCCGGTG 192
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 62 GAAACGCGAACGGATCAGGTTTTCAAACCCGATCCGTGACTTACATGCCTAGACCCGGTG 121
Query 193 ACGGAGCACCACGCGCAGTGACGCTGATCCCCGGAGATGGAATCGGTCCTCTGGTGACGA 252
|||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 122 ACGGAGCACCACGCGCAGTGACGCTGATTCCAGGAGATGGAATCGGACCTCTGGTAACGA 181
Query 253 ACGCCGTGGAACAGGTGATGGAAGCGATGCACGCTCCGATCTTCTTCGAGAAGTACGATG 312
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 182 ACGCCGTGGAACAGGTGATGGAAGCGATGCACGCGCCGATCTTCTTCGAGAAGTACGATG 241
Query 313 TTCACGGAGAAATGAGCCGTGTGCCGCCGGAAGTGATGGAGTCGATAAGGAAGAATAAGG 372
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 242 TTCACGGAGAAATGAGCCGTGTGCCGGCGGAAGTGATGGAGTCGATAAGGAAGAATAAGG 301
Query 373 TTTGTTTGAAAGGTGGGCTTAAGACTCCTGTTGGTGGTGGTGTTAGTTCTCTTAACGTCC 432
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 302 TTTGTTTGAAAGGTGGGCTTAAGACTCCTGTTGGTGGTGGTGTTAGTTCGCTTAACGTCC 361
Query 433 AGCTTAGGAAAGAGCTTGACCTCTTTGCTTCTCTGGTCAACTGTTTTAATTTGCCTGGTT 492
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 362 AGCTTAGGAAAGAGCTTGACCTCTTTGCGTCTCTGGTCAACTGTTTTAATTTGCCTGGTT 421
Query 493 TACCTACTCGCCATGAGAATGTTGACATCGTTGTCATCAGAGAGAACACTGAAGGTGAGT 552
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TACCTACTCGCCATGAAAATGTTGACATCGTTGTCATCAGAGAGAACACTGAAGGTGAGT 481
Query 553 ACGCGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGGTGATCACGA 612
| |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 482 ATGCGGGGCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAGGTGATCACGA 541
Query 613 AGTTCTGTTCGGAGCGTATTGCAAAGTATGCTTTTGAGTATGCCTACCTGAACAACAGGA 672
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 542 AGTTCTGTTCCGAGCGTATTGCCAAGTATGCTTTTGAGTATGCCTACCTGAACAACAGGA 601
Query 673 AGAAAGTTACAGCGGTGCATAAGGCTAACATCATGAAACTTGCGGATGGTTTGTTCTTGG 732
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 602 AGAAAGTTACAGCGGTGCATAAGGCTAACATCATGAAACTTGCGGACGGTTTGTTCTTGG 661
Query 733 AATCTTGTCGCGAGGTTGCGAAAAAGTATCCCAGCATCACCTACAATGAAATCATTGTTG 792
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 662 AATCTTGTCGGGAGGTTGCTAAAAAGTATCCGAGCATCACCTACAATGAAATCATTGTTG 721
Query 793 ATAACTGCTGTATGCAACTTGTAGCCAAACCAGAGCAATTCGATGTCATGGTAACGCCGA 852
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 722 ATAACTGCTGTATGCAACTTGTAGCGAAACCAGAGCAATTCGATGTCATGGTAACGCCCA 781
Query 853 ATCTCTATGGGAATTTAGTTGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ATCTCTATGGGAATTTAGTTGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCA 841
Query 913 TGCCTGGAGGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGCCTGGAGGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAA 901
Query 973 ATGTTGGGAAAGACAAGATAGTATTGGAAAACAAAGCAAACCCAGTGGCATTGCTTCTCT 1032
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATGTTGGGAAAGATAAGATAGTATTGGAAAACAAAGCAAACCCAGTGGCATTGCTTCTCT 961
Query 1033 CATCAGCGATGATGCTTAGACACCTTCAGTTTCCTTCATTTGCTGACCGGCTCGAAACAG 1092
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 962 CATCAGCGATGATGCTAAGACACCTTCAGTTTCCTTCATTTGCTGACCGGCTTGAAACAG 1021
Query 1093 CAGTGAAGAAAGTCATCGCTGAAGGAAAGTGCCGGACGAAAGATCTTGGTGGAACAAGCA 1152
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1022 CAGTGAAGAAAGTCATCGCTGAAGGAAAGTGCCGGACGAAAGATCTTGGTGGCACAAGCA 1081
Query 1153 CGACTCAAGAGGTCGTTGATGCGGTCATTGCAAAACTAGACTGACTTTGACAAATTACGT 1212
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1082 CGACTCAAGAGGTCGTTGATGCGGTCATTGCAAAATTAGACTGACTTTGACAAATTACGT 1141
Query 1213 GTTCCCGCTCTGCATAAATCATCAAATTCCTGATACAGATTTTGTGTTGCCAAAATATGG 1272
|||| | || | | || | | || |||||||||||||||||||||||||||
Sbjct 1142 GTTC--GTTC--C------C-TC---T-C-TGCTACAGATTTTGTGTTGCCAAAATATGG 1185
Query 1273 GGTATGATCCAAGCACAACGGTTATCTGGTTTTGTACCTCGAGTTTTATTATATT 1327
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GGTATGATCCAAGCCCAACGGTTATCTGGTTTTGTACCTCGAGTTTTATTATATT 1240
> Ahg480594 jgi|Araly1|480594|fgenesh2_kg.3__3295__AT2G17130.1
Length=1402
Score = 1046 bits (566), Expect = 0.0
Identities = 909/1071 (85%), Gaps = 37/1071 (3%)
Strand=Plus/Plus
Query 153 ATTCAAACCCGATCCGTGACTTACATGCCCAGACCCGGTGACGGAGCACCACG-CGCAGT 211
||||| |||||||||||||||||||||||||||||||| |||||| |||||| | | ||
Sbjct 122 ATTCAGACCCGATCCGTGACTTACATGCCCAGACCCGGCGACGGAAAACCACGAC-CGGT 180
Query 212 GACGCTGATCCCCGGAGATGGAATCGGTCC-TCTGGTGACGAACGCCGTGGAACAGGTGA 270
||| | |||||||| || ||| | ||||| | |||| || ||||| || ||||| ||||
Sbjct 181 AACGTTAATCCCCGGCGACGGAGTTGGTCCGT-TGGTAACAAACGCGGTTGAACAAGTGA 239
Query 271 TGGAAGCGATGCACGCTCCGATCTT-CTTCGAGA-AGTACGATGTTCACGGAGAAATG-A 327
|| ||||||||||||| ||| | || |||||| | || ||| ||||| ||||| ||| |
Sbjct 240 TGAAAGCGATGCACGCACCGGT-TTACTTCGA-ACCGTTCGAAGTTCATGGAGATATGAA 297
Query 328 GCCGTGTGCC-GCCGGAAGTGA-TGGAGTCGA-TAAGGAAGAATAAGGTTTGTTTGAAAG 384
| || | || | || | | | |||| |||| ||| |||||| || |||||||||||||
Sbjct 298 G-AGTTTACCTGAAGG-A-TTATTGGAATCGATTAA-GAAGAACAAAGTTTGTTTGAAAG 353
Query 385 GTGGGCTTAAGACTCCTGTTGGTGGTGGTGTTAGTTCTCTTAACGTCCAGCTTAGGAAA- 443
||||||| |||||||| || ||||||||||| |||||||| || || | || | ||||
Sbjct 354 GTGGGCTCAAGACTCCCGTCGGTGGTGGTGTGAGTTCTCTCAATGTTAATCTGA-GAAAG 412
Query 444 GAGCTTGACCTCTTTGCTTCTCTGGTCAACTGTTTTAATTTGCCTGGTTTACCTACTCGC 503
|||||||| ||||| |||||| ||||||||||||| ||||||||||||||| || | ||
Sbjct 413 GAGCTTGATCTCTTCGCTTCTTTGGTCAACTGTTTCAATTTGCCTGGTTTAGCTTCGCGT 472
Query 504 CATGAGAATGTTGACATCGTTGTCATCAGAGAGAACACTGAAGGTGAGTACGCGGGGCTT 563
|||||||||||||| || ||||| || |||||||||||||||||||| || || || |||
Sbjct 473 CATGAGAATGTTGATATTGTTGTGATTAGAGAGAACACTGAAGGTGAATATGCAGGTCTT 532
Query 564 GAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGGTG-ATCACGAAGTTCTGTTC 622
|| || || |||||||||||||| |||||||| || |||||| || || |||||||||||
Sbjct 533 GAACATGAAGTTGTTCCTGGTGTTGTTGAGAGCCTTAAGGTGAAT-ACAAAGTTCTGTTC 591
Query 623 GGAGCGTATTGCAAAGTATGCTTTTGAGTATGCCTACCTGAACAACAGGAAGAAAGTTAC 682
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 592 GGAGCGTATTGCAAAGTATGCGTTTGAGTATGCTTACTTGAACAACAGGAAGAAAGTTAC 651
Query 683 AGCGGTGCATAAGGCTAACATCATGAAACTTGCGGATGGTTTGTTCTTGGAATCTTGTCG 742
||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 652 AGCAGTGCACAAGGCTAACATCATGAAACTGGCTGATGGTTTGTTCTTGGAATCTTGTCA 711
Query 743 CGAGGTTGCGAAAAAGTATCCCAGCATCACCTACAATGAAATCATTGTTGATAACTGCTG 802
|||||||| || |||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct 712 AGAGGTTGCTAAGAAGTATCCAAGCATTGCCTACAATGAAATCATTGTTGATAACTGTTG 771
Query 803 TATGCAACTTGTAGCCAAACCAGAGCAATTCGATGTCATGGTAACGCCGAATCTCTATGG 862
||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 772 TATGCAACTTGTAGCTAGACCAGAGCAATTCGATGTCATGGTGACGCCCAATCTCTATGG 831
Query 863 GAAT-TTAGTTGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCATGCCTGGAG 921
||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 832 TAATCTT-GTTGCAAATACTGCTGCTGGTATTGCTGGAGGCACTGGAGTCATGCCTGGAG 890
Query 922 GAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAAATGTTGGGA 981
| ||||||||||| || ||||||| || ||||||||||||||||| ||||| || ||||
Sbjct 891 GGAATGTTGGGGCGGAGTATGCGGTCTTTGAGCAAGGTGCATCAGCGGGAAACGTGGGGA 950
Query 982 AAGA--CAA-G-ATAGTATTGGAAAACAAAGCAAACCCAGTGGCATTGCTT-CTCTCATC 1036
| || ||| | | || | | |||| || |||||||| ||||| ||| || || |||||
Sbjct 951 AGGATACAACGGA-AG-A--GCAAAAGAATGCAAACCCTGTGGCTTTG-TTGCTGTCATC 1005
Query 1037 AGCGATGATGCTTAGACACCTTCAGTTTCCTTCATTTGCTGACCGGCTCGAAACAGCAGT 1096
||| ||||||||||||||||||||||| ||||| ||||||||| |||| ||||| || ||
Sbjct 1006 AGCCATGATGCTTAGACACCTTCAGTTCCCTTCTTTTGCTGACAGGCTTGAAACCGCTGT 1065
Query 1097 GAAGAAAGTCATCGCTGAAGGAAAGTGCCGGAC-GAAAGATCTTGGTGGAA-CAAGCACG 1154
|||| || ||||||||||||||||||||||| ||| |||||||| |||| || | |||
Sbjct 1066 GAAGCGTGTTATCGCTGAAGGAAAGTGCCGGACTGAA-GATCTTGGCGGAAACA-GTACG 1123
Query 1155 ACTCAAGAGGTCGTTGATGCGGTCATTGCAAAACTAGACTGACTTTGACAA 1205
|| |||||||||||||| || ||||||||||| | || |||||| |||||
Sbjct 1124 ACACAAGAGGTCGTTGACGCTGTCATTGCAAATTTGGATTGACTT-GACAA 1173
> Ahg923469 jgi|Araly1|923469|scaffold_104750.1
Length=325
Score = 226 bits (122), Expect = 4e-58
Identities = 150/164 (91%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 600 AAGGTGATCACGAAGTTCTGTTCGGAGCGTATTGCAAAGTATGCTTTTGAGTATGCCTAC 659
|||| |||||| |||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 130 AAGGCGATCACAAAGTTCCGTTCGGAGGGTATTGCAGAGTATGCTTTTGAGTATGCCTAC 189
Query 660 CTGAACAACAGGAAGAAAGTTACAGCGGTGCATAAGGCTAACATCATGAAACTTGCGGAT 719
|| ||||||||||||||| || |||||||||||||||||||||||||||||| ||| |||
Sbjct 190 CTCAACAACAGGAAGAAAATTGCAGCGGTGCATAAGGCTAACATCATGAAACCTGCAGAT 249
Query 720 GGTTTGTTCTTGGAATCTTGTCGCGAGGTTGCGAAAAAGTATCC 763
||||||||||| |||||||||||||||||| |||||||||||
Sbjct 250 TGTTTGTTCTTGCTATCTTGTCGCGAGGTTGCTAAAAAGTATCC 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5