BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35270.1
Length=3211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491122 jgi|Araly1|491122|fgenesh2_kg.7__555__AT4G35270.1 3594 0.0
Ahg906541 jgi|Araly1|906541|Al_scaffold_0003_3669 1524 0.0
> Ahg491122 jgi|Araly1|491122|fgenesh2_kg.7__555__AT4G35270.1
Length=3255
Score = 3594 bits (1946), Expect = 0.0
Identities = 2112/2190 (96%), Gaps = 19/2190 (1%)
Strand=Plus/Plus
Query 1037 TCTGCAGAGTATATGACCTGCCTCTGGCTTTAACGTGGGCACCGTGTGCTCGGCAAGGCA 1096
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TCTGCAGATTATATGACCTGCCTCTGGCTTTAACGTGGGCACCGTGTGCTCGGCAAGGCA 1129
Query 1097 AAGTTGGATCCCGCCATTCTGATGAGAACTTCTCTGAGTGTGTTTCAACTGTTGATGATG 1156
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1130 AAGTTGGATCCCGCCATTCTGATGAGAACTTCGCTGAGTGTGTTTCAACTGTTGATGATG 1189
Query 1157 CTTGCATTGTCCCTGACCATCAGAGTCGTCATTTTCTAGAGGCATGTTCTGAACACCATC 1216
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1190 CTTGCATTGTCCCTGATCATCAGAGTCGTCATTTCCTAGAGGCATGTTCTGAACACCATC 1249
Query 1217 TGCTTCAAGGGGAAGGCATTGTAGGAAAAGCATTCAACGCAACCAAACTGTTTTTCGTGC 1276
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1250 TGCTTCAAGGGGAAGGCATTGTGGGAAAAGCATTCAAAGCAACCAAACTGTTTTTCGTGC 1309
Query 1277 CCGAAGTAACCACTTTTAGCAAGACCAACTACCCTCTTGCACACCATGCTAAGATCTCTG 1336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1310 CCGAAGTAACCACTTTTAGCAAGACCAACTACCCTCTTGCACACCATGCTAAGATCTCAG 1369
Query 1337 GTCTACATGCTGCTTTAGCAGTCCCATTGAAAAACAAATTCAATAGTTCGGTTGAGTTTG 1396
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1370 GTCTACATGCTGCTCTAGCAGTCCCGTTGAAAAACAAATTCAATAGTTCGGTTGAGTTTG 1429
Query 1397 TGTTGGAGTTTTTCTTTCCAAAAGCTTGCCTTGACACCGAAGCACAACAAGATATGCTCA 1456
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1430 TGTTCGAGTTTTTCTTTCCAAAAGCTTGCCTTGACACCGAAGCGCAACAAGAAATGCTCA 1489
Query 1457 AGTCTCTGTCTGCGACCCTTCAGCAGGATTTCAGGAGCTTAAATCTTTTCATTGATAAAG 1516
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AGTCACTGTCTGCGACCCTTCAGCAGGATTTCAGGAGCTTAAATCTTTTCATTGATAAAG 1549
Query 1517 AGCTTGAGCTAGAAGTTGTATTTCCCGTTAGAGAGGAAGTTGTTTTTGCAGAGAACCCAC 1576
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1550 AGCTTGAGCTAGAAGTTGTATTTCCCGTTAGAGAGGAAGTAGTTTTTGCAGAGAACCCAC 1609
Query 1577 TTATCAACGCAGGAACCGGAGAGGATATGAAACCATTGCCTTTGGAAGAAATTTCTCAGG 1636
|| | |||||||||||||||||| |||||||||| |||||||||||||| || |||||||
Sbjct 1610 TTCTTAACGCAGGAACCGGAGAGAATATGAAACCTTTGCCTTTGGAAGATATGTCTCAGG 1669
Query 1637 AAGATTCTTCATGGATCTCACACATGATAAAGGCAAATGAGAAAGGTAAAGGCGTGTCAC 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 AAGATTCTTCATGGATCTCACACATGATAAAGGCAAATGAGAAAGGTAAAGGCGTGTCAC 1729
Query 1697 TTTCTTGGGAGTACCAAAAAGAAGAGCCAAAAGAAGAGTTTATGCTTACATCTGGATGGG 1756
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TTTCTTGGGAGTATCAAAAAGAAGAGCCAAAAGAAGAGTTTATGCTTACATCTGGATGGG 1789
Query 1757 ATAACAATCAGATTGGATCAGGCCACAATAACTTTCTTTCAGAAGCTGAGCAGTTTCAAA 1816
|||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |
Sbjct 1790 ATAACAATCAGATTGGTTCTGGTCACAATAACTTTCTTTCAGAAGCTGAGCAGTTTCAGA 1849
Query 1817 AGGTGACAAATTCAGGACTCAGAATCGACATGGATCCAAGTTTTGAATCAGCTTCCTTTG 1876
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1850 AGGTGTCAAATTCAGGACTCAGAATCGACATGGTTCCAAGTTTTGAATCAGCTTCCTTTG 1909
Query 1877 GTG-T-T-GGGCAGACATTACTAGGCAGTAGAAGACCAGGTGAGAAGAGAAGAACAAAAA 1933
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 GTGTTGTGGGGCAGACATTACTAGGCAGTAGAAGACCAGGTGAGAAGAGAAGAACAAAAA 1969
Query 1934 CAGAAAAGACAATTGGTTTAGAAGTTCTTCGACAATACTTTGCAGGAAGCCTCAAAGATG 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 CAGAAAAGACAATTGGTTTAGAAGTTCTTCGACAATACTTTGCAGGAAGCCTCAAAGATG 2029
Query 1994 CAGCCAAGAGCATTGGTGTTTGTCCAACTACCTTGAAAAGAATATGCAGACAACACGGGA 2053
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 CAGCTAAGAGCATTGGTGTTTGTCCAACTACCTTGAAAAGAATATGCAGACAACACGGGA 2089
Query 2054 TAACACGATGGCCTTCCCGGAAGATCAAGAAAGTGGGGCATTCATTAAAGAAACTCCAAC 2113
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 TAACACGGTGGCCTTCTCGGAAGATCAAGAAAGTGGGGCATTCATTAAAGAAACTCCAAC 2149
Query 2114 TTGTTATAGACTCTGTTCAAGGTGTTCAAGGTTCTATTCAACTTGATTCATTCTATACAA 2173
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2150 TTGTTATAGACTCTGTTCAAGGTGTTCAAGGCTCTATTCAACTTGATTCATTCTATACAA 2209
Query 2174 GTTTCCCAGAATTAAGCTCCCCACATATGTCTGGTACTGGCACTTCCTTCAAGAATCCAA 2233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2210 GTTTCCCAGAATTAAGCTCCCCACATATGTCTGGTACTGGCACTTCCTTCAAGAATCTAA 2269
Query 2234 ATGCTCAAACGGAGAACGGTGTTTCAGCACAGGGAACTGCTGCAGCTCCAAAGTCACCAC 2293
|||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2270 ATGCTCAAACCGAGAACGGTGGTTCGGCACAGGGAACTGCTGCAGCTCCAAAGTCACCAC 2329
Query 2294 CATCATCTTCTTGTAGCCACAGCTCTGGTTCAAGCACCTGTTGTTCAACTGGAGCTAATC 2353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 CATCATCTTCTTGTAGCCACAGCTCTGGTTCAAGCACCTGTTGTTCAACTGGAGCTAATC 2389
Query 2354 AAAGTACCAATACTGGGACTACCTCAAATACTGTAACCACTCTGATGGCTGAAAATGCTA 2413
|||| ||||| || || | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 2390 AAAGCACCAACACCGGAAATACCTCAAATACTGTAACCACTTTGATGGCTGAAAATGCTA 2449
Query 2414 GCGCGATCTTGAAGAGAGCTCGTAGCGAAGTGAGACTTCATACCATGAATCAGGATGAAA 2473
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2450 GCGCGATCTTGAAGAGAGCTCGTAGCGAGGTGAGACTGCATACCATGAATCAGGATGAAA 2509
Query 2474 CAAAGTCCCTCTCTAGAACCCTGAGCCACAAAACATTCAGTGAGCATCCTCTTTTCGAAA 2533
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2510 CAAAGTCCCTGTCTAGAACCCTGAGCCACAAAACATTCAGTGAACATCCTCTTTTCGAAA 2569
Query 2534 ATCCACCTCGGTTACCGGAGAATAGTAGCAGGAAGTTGAAAGCTGGAGGGGCCTCAAAAG 2593
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2570 ATCCACCTCGGTTACCGGAGAGTAGTAGCAGGAAGTTGAAAGCTGGAGGGGCCTCAAAAG 2629
Query 2594 TGAAAGCCACATTTGGTGAAGCCAAAGTACGGTTTACTTTGCTTCCTACTTGGGGCTTCA 2653
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2630 TGAAAGCCACATTTGGTGAGGCCAAAGTACGGTTTACTTTGCTCCCTACATGGGGCTTCA 2689
Query 2654 GAGAGTTGCAGCATGAGATTGCTAGGCGTTTTAACATAGATAATATTGCACCCTTTGATC 2713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2690 GAGAGTTGCAGCATGAGATTGCTAGGCGTTTTAACATAGATAATATTGCACCCTTTGATC 2749
Query 2714 TTAAGTACCTGGATGATGACAAGGAATGGGTTCTTCTGACATGTGAAGCGGATCTCGAGG 2773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2750 TTAAGTACCTGGATGATGACAAGGAATGGGTTCTTCTGACATGTGAAGCGGATCTCGAGG 2809
Query 2774 AATGTATCGACATTTATAGATCATCACAGAGCCGCACGATCAAGATAAGTGTTCATGAAG 2833
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2810 AATGTATCGACATTTATAGATCATCACAGAGCCGCACGATCAAGATAAGCGTTCATGAAG 2869
Query 2834 CTTCTCAAGTCAAGCTGGGAGGTTCTTTTGGTAGCATCGGTCTTGGTCCCTCGTTATAAG 2893
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2870 CTTCTCAAGTCAAGCTAGGAGGTTCTTTTGGTAGCATCGGTCTTGGTCCTTCGTTATAAG 2929
Query 2894 CTATCAGGTA--TAA---GGTTGTTACCTGCAAGAAAAGAAAAGAAAAGAGCAGGAGATT 2948
| |||||||| ||| |||||| ||||||||||| | |||||||||||||||||||||
Sbjct 2930 CAATCAGGTAAGTAACAAGGTTGT-ACCTGCAAGAAGA-AAAAGAAAAGAGCAGGAGATT 2987
Query 2949 CGACTAATTTACTAGTGTGTTAGAAAAATATTACTCACCATTTTATAGCAAT-GGGCATC 3007
||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||
Sbjct 2988 CGACTAATTTACTAGTGTGTTAGAAAAATATTACTTACCATTTGATAGCAATAGGGCATC 3047
Query 3008 --GTTTGTAAACATATTTTCAGTGCCCCCATTTTGCAAGCAGCA-GTAGTGGACTGGTTT 3064
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3048 TCGTTTGTACACATATTTTCAGTGCCCCCATTTTGCAAGCAGCAAGTAGTGGACTGGTTT 3107
Query 3065 CCTGCATCGGCTTAGCAGATTTTTTGTATAATAAGGCGATGCGTA--CCAGAGAAACATG 3122
||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 3108 CCTGCATCGGCTTAGCAGATTTTTTGTATAATAAGGCGATGCGTATACCAGA-AA-CATG 3165
Query 3123 CTTATATGTATGTATTATTATTGTCTGTACATCATTT-GTCTTCTGGATTCTACTAAGCT 3181
|||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 3166 CTTATATGTATGTATTTTTATTGTCTGTACATCATTTTGTCATCTGGATTCTACTAAGCT 3225
Query 3182 CTGCAAGTATGTTAAATTGATATATCTTCT 3211
||||||||||||||||||||||||||||||
Sbjct 3226 CTGCAAGTATGTTAAATTGATATATCTTCT 3255
Score = 1557 bits (843), Expect = 0.0
Identities = 927/969 (96%), Gaps = 0/969 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGGTGGTCGTGGTGGTGGAGATGGCAATTTCTTACCAAACTCTAACTTTGGTGTA 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1 ATGGAAGGTGGTCGTGGTGGTGGAGATGGCAATTTCTTACCCAACTCTAACTTTGGTGCA 60
Query 61 TTCTCTGACTCCGCTATGGATATGGATTTCATGGATGAACTCTTGTTTGATGGATGTTGG 120
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTCTCTGAGTCGGCTATGGATATGGATTTCATGGATGAACTCTTCTTTGATGGATGTTGG 120
Query 121 CTTGAGACAACTGATGGTAAGAGCTTGAAGCAGACCATGGGACAACAAGTATCCGATTCT 180
||||||||||| |||||||||||||| ||||||||||||||||||| ||| || ||||||
Sbjct 121 CTTGAGACAACAGATGGTAAGAGCTTCAAGCAGACCATGGGACAACCAGTTTCTGATTCT 180
Query 181 ACTACCATGAATGACAACAACAACAACTCGTACCTTTACGGTTATCAATATGCTGAGAAC 240
|||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 ACTATCATGAATGATAACAACAACAACTCGTACCTTTACGGTTATCAATATACTGAGAAC 240
Query 241 CTTTCACAAGATCATATCTCCAACGAAGAAACAGGGAGAAAGTTTCCTCCAATACCACCG 300
||||||||||||||||| || || |||||||||||||||||||||||||||||| |||||
Sbjct 241 CTTTCACAAGATCATATATCAAATGAAGAAACAGGGAGAAAGTTTCCTCCAATAACACCG 300
Query 301 GGCTTTCTCAAGATCGAGGATCTCTCCAATCAAGTACCTTTTGACCAGTCTGCAGTTATG 360
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 301 AGCTTTCTCAAGATCGAGGATCTCTCCAATCAACTACCTTTTGACGAGGCTGCAGTTATG 360
Query 361 AGTTCTGCACAAGCAGAGAAGTTTCTCCTTGAAGAATCTGAGGGAGGAAGAAGATATTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTTCTGCACAAGCAGAGAAGTTTCTCCTTGAAGAATCTGAGGGAGGAAGAAGATATTGG 420
Query 421 ATTGCTCCAAGAACAAGCCAAGGTCCTTCTTCATCAGTGAAAGAGAGATTAGTACAAGCT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 ATTGCTCCAAGAACAAGCCAAGGTCCTTCTTCATCAGTGAAAGATAGATTAGTACAAGCT 480
Query 481 ATAGAGGGTCTTAACGAGGAGGTGCAAGATAAAGACTTCCTCATACAGATATGGCTACCA 540
||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 481 ATAAAGGGTCTTAACGAGGCGGTGCAAGATAAAGACTTCCTCATACAGATATGGGTACCA 540
Query 541 ATTCAACAAGAAGGCAAGAACTTTCTCACAACTTCGGAGCAGCCACACTTCTTCAACCCG 600
|||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 541 ATTCAACAGGAAGGCAAGAACTTTCTCACAACTTTAGAGCAGCCACACTTCTTTAACCCG 600
Query 601 AAATACTCGAGTCTTAAAAGATATAGAGATGTTTCAGTGGCTTATAATTTCCTGGCTGAT 660
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 601 AAATACTCGAGTCTTAAAAGATACAGAGATGTTTCAGTGGCATATAATTTCCTGGCTGAT 660
Query 661 GAGGATTCTAAAGAGTCTGTTGGTCTCCCCGGTCGTGTTTTTCTTAAGAAACTACCTGAG 720
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 661 GAGGATTCTAAAGAGTCTGTGGGTCTCCCCGGTCGTGTTTTTCTTGGGAAACTACCTGAG 720
Query 721 TGGACACCTGATGTGCGGTTCTTTAGAAGCGAAGAGTATCCGCGGATCAAAGAAGCAGAG 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 TGGACACCTGATGTGCGGTTCTTTAGAAGCGAAGAGTATCCGCGAATCAAAGAAGCAGAG 780
Query 781 CAATGTGATGTTCGTGGATCATTAGCCCTTCCTGTGTTTGAAAGAGGTAGTGGAACTTGT 840
|||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 781 AAATGTGATGTCCGTGGATCATTAGCCCTTCCTGTGTTTGAAAGAGGTAGTGGGATTTGT 840
Query 841 TTGGGTGTTGTTGAGATTGTTACAACAACTCAGAAGATGAATTACAGGCCAGAGCTTGAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGGGTGTTGTTGAGATTGTTACAACAACTCAGAAGATGAATTACAGGCCAGAGCTTGAT 900
Query 901 AATATCTGTAAAGCTCTCGAGTCTGTTAATCTAAGGAGTTCAAGAAGCTTGAATCCCCCA 960
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 901 AATATCTGTAAAGCTCTCGAGTCTGTTAATCTAAGGAGTTCAAGAAACTTGACTCCTCCA 960
Query 961 AGCAGAGAG 969
|||||||||
Sbjct 961 AGCAGAGAG 969
> Ahg906541 jgi|Araly1|906541|Al_scaffold_0003_3669
Length=2745
Score = 1524 bits (825), Expect = 0.0
Identities = 1548/1885 (82%), Gaps = 98/1885 (5%)
Strand=Plus/Plus
Query 379 AAGTTTCTCCTTGAAGAATCTGAGG-GAGGAAGAAGATATTGGATTGCTCCAAGAACAAG 437
||||||||||| |||||| |||||| | |||| ||| | |||||||| |||||| ||||
Sbjct 307 AAGTTTCTCCTCGAAGAAGCTGAGGTG-GGAAAAAGTTGGTGGATTGCCCCAAGAGCAAG 365
Query 438 CCAAGGTCCTTCTTCATCAGTGAAAGAGAGATTAGTACAAGCTA-TAGAGGGTCTTAACG 496
|||| ||||||||||| ||||| |||||| || ||| ||||| ||| ||||||||||
Sbjct 366 TGAAGGACCTTCTTCATCTGTGAAGGAGAGACTATTACGAGCTATTAG-TGGTCTTAACG 424
Query 497 AGGAGGTGCAAGATAAAGACTTCCTCATACAGATATGGCTACCAATTCAACAAGAAGGCA 556
||| |||||||||||| |||||| | | ||||||||| | |||||||| || ||||| |
Sbjct 425 AGGCGGTGCAAGATAAGGACTTCTTGGTTCAGATATGGGTGCCAATTCAGCAGGAAGGGA 484
Query 557 AGAACTTTCTCACAACTTCGGAGCAGCCACACTTCTTCAACCCGA-AATACTCGAGTCTT 615
||| |||||| || |||| || |||||||| || || || || | ||||||| || |||
Sbjct 485 AGAGCTTTCTGACCACTTGGGCTCAGCCACATTTATTTAA-CCAAGAATACTCCAGCCTT 543
Query 616 AAAAG-ATATAGAGATGTTTCAGTGGCTTATAATTTCCTGGCTGATGAGGATTCT-AAAG 673
|| ||| ||| ||||||||| | |||||||||||| ||||||||||| | | ||||
Sbjct 544 -GCAGAATACAGACATGTTTCAGAGACTTATAATTTCCCGGCTGATGAGG-GTATGAAAG 601
Query 674 AGTCTGTTGGTCTCCCCGGTCGTGTTTTTCTT-AAGAAACTACCTGAGTGGACACCTGAT 732
| | ||| ||||| || ||||||| ||||||| |||| | ||||||||||| ||||||
Sbjct 602 AATTTGTGGGTCTTCCTGGTCGTG-TTTTCTTGCAGAAGTTGCCTGAGTGGACTCCTGAT 660
Query 733 GTGCGGTTCTTTAGAAGCGAAGAGTATCCGCGGATCAAAGAAGCAGAGCAA-TGTGATGT 791
||||||||||||||||| || || ||||| || |||||||||||| | || ||||||||
Sbjct 661 GTGCGGTTCTTTAGAAGAGATGAATATCCACGCATCAAAGAAGCACA-AAAGTGTGATGT 719
Query 792 TCGTGGATCA-TTAGCCCTTCCTGTGTTT-GAAAGAGGTAGTGGAACTTGTTTGGGTGTT 849
|||||| ||| || ||||||||||| ||| |||||||||||||| | |||||||||||||
Sbjct 720 TCGTGGGTCACTT-GCCCTTCCTGT-TTTCGAAAGAGGTAGTGGGATTTGTTTGGGTGTT 777
Query 850 GTTGAGATTGTTACAACAACTCAGAAGATGAATTACAGGCCAGAGCTTGATAATATCTGT 909
|||||||| || |||||||||||||||||||||||| ||| ||| ||||| || || |||
Sbjct 778 GTTGAGATCGTCACAACAACTCAGAAGATGAATTACCGGCAAGAACTTGAGAAGATGTGT 837
Query 910 AAAGCTCTCGAGTCTGTTAATCTAAGGAGTTCAAG-AAGCTTGAATCCC-CCAAGCAGAG 967
|||||||| ||| | || ||||||||||||||||| || |||||| ||| |||||| |
Sbjct 838 AAAGCTCTTGAGGCCGTCAATCTAAGGAGTTCAAGTAA-CTTGAA-CCCACCAAGCTCTG 895
Query 968 AGTTTCTGCAGGTCTATAATGAATTCTACTATGCTGCATTACCTGAGGTATCAGAGTTT- 1026
|||||||||||||||||| ||| ||||||| ||||||||||||||| || ||| |||
Sbjct 896 AGTTTCTGCAGGTCTATAGTGATTTCTACTGTGCTGCATTACCTGAAATAAAAGA-TTTC 954
Query 1027 TT-GACATTGGTCTGCAGAGT-ATATGACCTGCCTCTGGCTTTAACGTGGGCACCGTGTG 1084
|| | || ||||||||| | |||||| ||||||| ||||| | ||||| |||||||
Sbjct 955 TTGGCCA-CAGTCTGCAGA-TCATATGATTTGCCTCTAGCTTTGTCATGGGCTCCGTGTG 1012
Query 1085 CTCGGCAAGGCAAAGTTGGATCCCGCCATTCTGATGAGAACTTCTCTGAGTGTGTTTCAA 1144
|||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1013 CTCGGCAAGGGAAAGTTGGCTCCCGACATTCTGATGAGAACTTCTCTCAGTGTGTTTCAA 1072
Query 1145 CTGTTGATGATGCTTGCAT-TGTCCCTGACCATCAGAGTCGTCATTTTCT-AGAGGCATG 1202
| | ||| ||||||| | |||||||||| | ||||| | ||||| | ||||||||
Sbjct 1073 CAATCGATTCTGCTTGC-TCTGTCCCTGACGAACAGAG-CAAAATTTTTTGGGAGGCATG 1130
Query 1203 TTCTGAACACCATCTGCTTCAAGGGGAAGGCATTGTAGGAAAAGCATTCAACGCAACCAA 1262
|||||||||||| |||| || ||||||||||||||||| ||||||||||| || || ||
Sbjct 1131 CTCTGAACACCATTTGCTCCAGGGGGAAGGCATTGTAGGGAAAGCATTCAAGGCCACTAA 1190
Query 1263 ACTGTTTTTCGTGCCCGAAGTAACCACTTTTAGCAAGACCAACTACCCTCTTGCACACCA 1322
||||||||| ||||||||||| | ||| ||||||||||||||||| ||||||||||||||
Sbjct 1191 ACTGTTTTTTGTGCCCGAAGTGATCACATTTAGCAAGACCAACTATCCTCTTGCACACCA 1250
Query 1323 TGCTAAGATCTCTGGTCTACATGCTGCTTTAGCAGTCCCATTGAAAAA-CAAATTCAATA 1381
|| ||||| ||||| |||||||||||||||||||||||||| ||||| |||| || |
Sbjct 1251 CGCCAAGATATCTGGACTACATGCTGCTTTAGCAGTCCCATT-AAAAAGCAAA-TC--TG 1306
Query 1382 GTTCGGTTGAGTTTGTGTTGGAGTTTTTCTTTCCAAAAGCTTGCCTTGACACCGAAGCAC 1441
||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct 1307 GTTTGGTTGAGTTTGTGTTGGAATTTTTCTTTCCAAAAGCATGCCTTGACACTGAAGCGC 1366
Query 1442 AACAAGATATGCTCAAGTCTCTGTCTGCGACCCTTCAGCAGGATTTCAGGAGCTT-AAAT 1500
|||| || ||||||||||| || |||| ||| || ||||| ||||||||||| || ||||
Sbjct 1367 AACAGGAAATGCTCAAGTCACTATCTGTGACGCTGCAGCAAGATTTCAGGAG-TTCAAAT 1425
Query 1501 CTTTTCATTGATAAAGAGCTTG-AGCTAGAAGTTGTATTTCCCGTTAGAGAGGA-AGTTG 1558
||| ||||||| ||||| | || || ||||||| ||||| || |||||||| || | ||
Sbjct 1426 CTTGTCATTGACAAAGA-CCTGAAGTTAGAAGTCGTATTGCCTGTTAGAGA-GACA-ATG 1482
Query 1559 -T-TTTTGCAGAGAACCCACTTA-TCAACGCAGGAACCGGAGAGGATATGAAACCATTGC 1615
| || | |||| ||||| || | | | |||| ||||| |||| | || | || |
Sbjct 1483 CTCTTCT-CAGAAAACCCGCTAAGTGGA-GCAGAAACCGCAGAGTCTTTG--A-CA--GA 1535
Query 1616 CTTTGGAAGAAATTTCTCAGGAAGATTCTTCATGGATCTCACACATGATAAAGGCAAATG 1675
|| |||| | | |||| || ||||||||||| |||||| ||| |||||| |
Sbjct 1536 AATT----GAAA----T--GCAAGAATCCTCATGGATCTCCCACATGCTAATGGCAAACG 1585
Query 1676 AGAAAGGTAAAGGCGTGTCACTTTCTTGGGAGTACCAAAAAGAAGAGCCAAAAGAAGAGT 1735
|||| ||||||| || |||||||||||||||||||| |||||||| || | |||||
Sbjct 1586 AGAAGGGTAAAGATGTATCACTTTCTTGGGAGTACCAGAAAGAAGATCC--TA-AAGAG- 1641
Query 1736 TTATGCTTACATCTGGATGGGATAACAATCAGATTGGAT-CAG-GCCACAATAACT-TT- 1791
| | | ||||||| |||| |||| |||| || ||| ||| ||| ||||| | ||
Sbjct 1642 --CT-C-T-CATCTGGCCGGGAAAACACTCAGCTT-GATCCAGTCCCA-AATAA-TGTTC 1693
Query 1792 CTTTCAGAAGCTGAGCAGTTTCA-AAAGGTGA-CAAATTCAGGACTCAGAA-TCGACA-T 1847
|||| |||||||||||| ||||| || | | ||| ||||||||||| || ||||||
Sbjct 1694 CTTT-AGAAGCTGAGCAATTTCAGCAA-G-CATCAACTTCAGGACTCA-AAGTCGACACA 1749
Query 1848 GGATCCAAGTTTTGAATCAGCTTCCTTTGGTGTTGGGCAGACAT-TACTAGGCAGTA-GA 1905
|| |||||| ||||||| |||| |||||| ||| || || | ||||||||| ||
Sbjct 1750 GG-TCCAAGCACTGAATCATCTTCGATTGGTG--GGG--GAAATATGTTAGGCAGTAGGA 1804
Query 1906 AGACCAGGTGAGAAGAGAAGAACAAAAACAGAAAAGACAATTGGTTTAGAAGTTCTTCGA 1965
| |||||| || |||||||||||||||||||||||||| ||||| || || |||||||||
Sbjct 1805 A-ACCAGGGGAAAAGAGAAGAACAAAAACAGAAAAGACCATTGGCTTGGAGGTTCTTCGA 1863
Query 1966 CAATACTTTGCAGGAAGCCTCAAAGATGCAGCCAAGAGCATTGGTGTTTGTCCAACTACC 2025
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1864 CAATACTTTGCTGGAAGCCTCAAGGATGCAGCCAAGAGCATTGGTGTTTGTCCAACTACC 1923
Query 2026 TTGAAAAGAATATGCAGACAACACGGGATAACACGATGGCCTTCCCGGAAGATCAAGAAA 2085
|||||||| ||||| || ||||| ||||||| |||||||| ||||| || ||||||||
Sbjct 1924 TTGAAAAGGATATGTAGGCAACATGGGATAATGCGATGGCCCTCCCGAAAAATCAAGAAG 1983
Query 2086 GTGGGGCATTCATTAAAGAAACTCCAACTTGTTATAGACTCTGTTCAAGGTGTTCAAGGT 2145
|| |||||||| ||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct 1984 GTTGGGCATTCGTTAAAGAAACTCCAACTTGTTATGGACTCTGTTCAAGGTGCGCAGGGC 2043
Query 2146 TCTATTCAACTTGATTCATTCTATACAAGTTTCCCAGAATT-AAGCTCCCCACATATGTC 2204
||||| ||||| ||||||||||||||||| |||||||| || || ||||||| |||||||
Sbjct 2044 TCTATCCAACTCGATTCATTCTATACAAGCTTCCCAGAGTTGAA-CTCCCCAAATATGTC 2102
Query 2205 TGGTACTGGCACTTCCTTCAAGAAT 2229
| ||| |||| ||||||| ||||||
Sbjct 2103 TAGTAATGGCCCTTCCTTGAAGAAT 2127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121317430325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5