BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35280.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944364 jgi|Araly1|944364|scaffold_700593.1 1277 0.0
> Ahg944364 jgi|Araly1|944364|scaffold_700593.1
Length=896
Score = 1277 bits (691), Expect = 0.0
Identities = 804/858 (94%), Gaps = 9/858 (1%)
Strand=Plus/Plus
Query 1 ATGAACAACAATCATTCCTATGATGATCGCAGTTTTCACATTCCACTTCATCCTTCTAAC 60
||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 23 ATGAACAACAATCATTCCTTTTATGATCGCAATTTTCACATTCCACTTCATCCTTCTAAC 82
Query 61 ACAAGCAACCCTAATCCAAATCTCCAGTTTGCTTTATCTTCAAGCTACGATCACAGTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 83 GCAAGCAACCCTAATCCAAATCTCCAGTTTGCTTTATCTTCAAGCTACGAACACAGTCCT 142
Query 121 AAGAAGAAACGCACCAAAACCGTTGCTTCATCCTCTAGTTCTTCaccaaaatccgcgtca 180
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 143 AAGAAGAAACGCACCAAAACCGTTGCTTCATCTTCTAGTTCTTCACCAAAGTCCGCATCA 202
Query 181 aaaccaaaatacaccaaaaaaccagacccaaatgcccccaaaatCACACGTCCATGTACT 240
||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 203 AAACCCAAATACACCAGAAAACCAGATCCAAATGCCCCCAAAATCACTCGTCCATGTACT 262
Query 241 GAATGTGGCAGAAAGTTTTGGTCTTGGAAGGCTCTCTTTGGTCACATGAGATGTCACCCT 300
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 263 GAATGTGGCAGACAGTTTTGGTCTTGGAAAGCTCTCTTTGGTCACATGAGATGTCACCCT 322
Query 301 GAGCGTCAATGGCGTGGCATTAATCCTCCTCCTAACTACCGTGTGC-CCACCGCGGCTTC 359
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 323 GAGCGTCAATGGCGTGGCATTAATCCTCCTCCTAACTACCGTGC-CTCCACTACGGCTTC 381
Query 360 TTCAAAACAGTTAAACCAGATATTACCAAATTGGGTCTCATTTATGTCCGAGGAAGACCA 419
|||| ||| ||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 382 ATCAAGACAACTAAACCAGAGATCACCAAATTGGGTCTCATTTATGTCTGAGGAAGACCA 441
Query 420 TGAAGTCGCTTCTTGTCTCTTAATGCTGTCTAATGGTACACCATCATCATCGAGTATTGA 479
|||||||||||||||||||||| || |||||||||| ||||||||||||||||||| |||
Sbjct 442 TGAAGTCGCTTCTTGTCTCTTACTGTTGTCTAATGGCACACCATCATCATCGAGTAGTGA 501
Query 480 ACGGTTCGAGTGTGGAGGATGTAAGAAAGTGTTTGGATCACATCAGGCTTTAGGAGGACA 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ACGGTTTGAGTGTGGAGGATGTAAGAAAGTGTTTGGATCACATCAGGCTTTAGGAGGACA 561
Query 540 CAGAGCGAGTCATAAAAACGTTAAAGGCTGTTTCGCTATCACAAACGTAACCGATGATCC 599
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 562 CAGAGCGAGTCACAAGAACGTTAAAGGATGTTTCGCTATCACAAACGTAACCGATGATCC 621
Query 600 TATGACGGTTTCTACTTCTAGTGGGCATGATCATCAGGG-AAAAATCCTTACGTTTTCAG 658
|||||||||| |||||||||||| || ||||| || || |||||||||||||||||| |
Sbjct 622 TATGACGGTTACTACTTCTAGTGATCAAGATCA-CAAGGCAAAAATCCTTACGTTTTCGG 680
Query 659 GGCATCATAAGTGTAATATCTGTTTTAGAGTGTTCTCGAGTGGTCAAGCTTTAGGAGGTC 718
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 681 GGCATCATAAGTGTAATATCTGTTTTAGGGTGTTCCCGAGTGGTCAAGCTTTAGGAGGTC 740
Query 719 ACATGAGATGTCATTGGGAAA-AGGAGGAGGAGCCGATGATCAGTGGTGCTTTGGATTTG 777
||||||||||||| ||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 741 ACATGAGATGTCACTGGGAAAGAGAAG-AGGAGACGATGATCAGTGGTGCTTTGGATTTG 799
Query 778 AATGTTCCTCCAACAATACAGGATCTTTCTACTTCGGACACATCAGGGTGTTGTTTAGAT 837
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 AATGTTCCTGCAA---TACAGGATCTTTCTACTTCGGACACATCAGGGTGTTGTTTAGAT 856
Query 838 CTTAGGTTAGGACTCTAA 855
|||||||||||||| |||
Sbjct 857 CTTAGGTTAGGACTTTAA 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5