BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35290.2
Length=3205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491120 jgi|Araly1|491120|fgenesh2_kg.7__553__AT4G35290.1 4444 0.0
Ahg906549 jgi|Araly1|906549|Al_scaffold_0003_3677 2019 0.0
> Ahg491120 jgi|Araly1|491120|fgenesh2_kg.7__553__AT4G35290.1
Length=2998
Score = 4444 bits (2406), Expect = 0.0
Identities = 2750/2914 (94%), Gaps = 31/2914 (1%)
Strand=Plus/Plus
Query 222 GGAACTGATTAAGCCAAAGCTATGTTTTGGGTTTTGGTTCTGTTGAGCTTCATTGTTCTT 281
||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 89 GGAACTGGTTAAACCAAAACAATGTTTTGGGTTTTGGTTCTGTTGAGCTTCATTGTTCTT 148
Query 282 ATTGGTGATGGGATGATTTCAGAGGGAGCTGGTTTAAGGCCTCGTTATGTTGATGTTGGA 341
||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 149 CTTGGTGATGGGATTATTTCAGAGGGAGC---TTCAAGGCCTCGTTATGTTGATGTTGGA 205
Query 342 GCAATATTCAGTTTAGGGACTTTACAGGGTGAAGTTACAAATATTGCTATGAAAGCTGCA 401
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 206 GCAATATTCAGTTTAGGGACTTTACATGGTGAAGTTACAAATATTGCCATGAAAGTTGCA 265
Query 402 GAGGAAGATGTAAATTCTGATCCTAGCTTCCTTGGTGGATCAAAATTGCGTATAACGACG 461
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 266 GAGGGTGATGTAAATTCTGATCCTCTCTTCCTTGGTGGATCAAAATTGCGTATAACGACG 325
Query 462 TATGATGCAAAGCGTAATGGATTCCTCACCATCATGGGAGCTTTGCAATTCATGGAGACT 521
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 326 TATGATGCCAAGCGTAATGGATTCCTCACCATCATGGGAGCATTGCAATTCATGGAGACT 385
Query 522 GATGCTGTGGCTATCATTGGTCCTCAGACATCAATAATGGCTCATGTACTGTCTCATCTT 581
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 386 GATGCTGTGGCTATCATTGGTCCTCAGACATCAATAATGGCTCATGTTCTGTCTCATCTT 445
Query 582 GCAAATGAGCTTAGTGTGCCTATGTTGTCATTCACAGCTTTAGACCCTAGTCTCTCGGCG 641
|||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||
Sbjct 446 GCAAATGAGCTTAGTGTGCCTATGCTGTCATTCACGGCTTTAGACCCTAGCCTATCGGCG 505
Query 642 CTTCAGTTCCCGTTCTTTGTCCAGACAGCACCTAGTGATCTCTTTCTGATGCGTGCCATT 701
|| |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct 506 CTCCAGTTCCCGTTCTTTGTCCAAACAGCACCTAGCGATCTCTTTTTAATGCGTGCCATT 565
Query 702 GCGGAAATGATAAGTTACTACGGTTGGTCAGAGGTGATTGCATTGTATAATGATGATGAC 761
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 566 GCGGAAATGATAAGTTACTACGGTTGGTCAGAGGTGGTTGCATTGTACAATGATGATGAC 625
Query 762 AACAGTAGAAACGGTATAACAGCTTTAGGCGATGAGCTCGAAGGAAGGCGCTGCAAGATT 821
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 626 AACAGTAGAAACGGTATAACAGCCTTAGGCGATGAGCTCGAAGGAAGGCGCTGCAAGATT 685
Query 822 TCATACAAGGCTGTGCTTCCTTTGGATGTGGTGATTACGAGTCCTCGTGAGATTATAAAT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 686 TCATACAAGGCTGTGCTTCCTTTGGATGTGGTGATTACGAGTCCTCGTGAGATCATTGAT 745
Query 882 GAGTTGGTTAAGATTCAAGGGATGGAATCTCGGGTAATCATTGTGAACACTTTCCCTAAA 941
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 746 GAGTTGGTTAAGATTCAAGGGATGGAATCTCGGGTTATCATTGTGAACACTTTCCCTAGA 805
Query 942 ACAGGTAAGAAAATCTTTGAGGAAGCCCAGAAGCTTGGCATGATGGAGAAAGGCTATGTT 1001
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 ACAGGTAGGATGATCTTTGAGGAAGCCCAGAAGCTTGGCATGATGGAGAAAGGCTATGTT 865
Query 1002 TGGATAGCTACAACTTGGTTGACTTCTCTGTTAGATTCTGTTAACCCGTTACCTGCCAAG 1061
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 866 TGGATAGCTACAACTTGGTTGACTTCTCTGTTAGATTCAGTTAACCCGTTGCCTTCCAAG 925
Query 1062 ACTGCTGAATCTCTTAGAGGCGTGCTTACTCTTCGTATTCACACGCCAAATTCaaaaaag 1121
| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||
Sbjct 926 AATGCTGAATCTCTTAGAGGAGTGCTCACTCTTCGTATTCACACACCAAATTCAAGAAAG 985
Query 1122 aaaaaaGATTTCGTGGCACGGTGGAACAAGTTGAGTAACGGGACTGTCGGTTTAAACGTT 1181
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 986 AAAAAAGATTTTGTGGCACGGTGGAACAAGTTGAGTAATGGGACTGTCGGTTTAAACGTT 1045
Query 1182 TATGGTCTCTATGCTTATGATACTGTCTGGATCATTGCTCGAGCTGTTAAGAGACTTCTA 1241
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1046 TATGGACTTTATGCTTATGATACTGTCTGGATCATTGCTCGAGCTGTTAAGACACTTCTA 1105
Query 1242 GATAGCAGAGCTAACATTTCCTTCTCTAGTGACCCAAAGTTAACCAGCATGAAGGGAGGA 1301
|||||| ||||||| ||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1106 GATAGCGGAGCTAATATTTCCTTCTCGAGCGACCCAAAGTTAACCAGCATGACGGGAGGA 1165
Query 1302 GGGTCACTGAATCTAGGTGCATTGAGCATATTTGACCAAGGATCACAATTTCTTGATTAT 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 GGGTCACTGAATCTAGGTGCATTGAGCATATTTGACCAAGGATCACAATTTCTTGATTAT 1225
Query 1362 ATTGTGAATACAAATATGACTGGTGTTACAGGTCAAATACAGTTTCTTCCTGACAGATCA 1421
|||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1226 ATTGTGAATACAAACATGACTGGTCTTACAGGTCAAATACACTTTCTTCCTGACAGATCA 1285
Query 1422 ATGATACAGCCCTCATATGACATCATAAACGTGGTTGATGACGGGTTTAGGCAGATAGGG 1481
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 ATGATACAGGCCTCATATGACATCATAAACGTGGTTGATGACGGGTTTAGGCAGATAGGG 1345
Query 1482 TATTGGTCTAACCATTCCGGGCTCTCTATTATACCTCCAGAGTCACTATACAAAAAGCTT 1541
||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
Sbjct 1346 TATTGGTCTAACCATTCTGGGCTCTCTATTATACCTCCTGAGTCACTATACAATAAGCCT 1405
Query 1542 TCAAATCGTTCGAGCTCAAACCAACATCTGAACAATGTGACTTGGCCTGGTGGGACTTCT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TCAAATCGTTCGAGCTCAAACCAACATCTGAACAATGTGACTTGGCCTGGTGGGACTTCT 1465
Query 1602 GAGACACCACGTGGTTGGGTTTTTCCTAACAACGGGAGACGATTGAGAATCGGTGTACCC 1661
| ||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1466 GTGACGCCACGTGGATGGGTTTTTCCTAACAACGGGAGAAGATTGAGAATCGGTGTACCC 1525
Query 1662 GATAGAGCAAGTTTTAAGGAGTTTGTGTCAAGGTTGGATGGAAGCAACAAAGTGCAAGGG 1721
|||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1526 GATAGAGCAAGTTTCAAGGAATTTGTGTCAAGGGTGGATGGAAGCAACAAAGTGCAAGGG 1585
Query 1722 TATGCCATTGATGTCTTTGAAGCTGCGGTAAAACTGATTTCTTATCCGGTTCCTCATGAG 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TATGCCATTGATGTCTTTGAAGCTGCGGTAAAACTGATTTCTTATCCGGTTCCTCATGAG 1645
Query 1782 TTCGTCCTATTTGGAGACGGTCTCAAGAACCCAAACTTCAATGAATTTGTCAACAATGTC 1841
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 TTCGTCCTTTTTGGAGACGGTCTCAAGAACCCAAACTTCAATGAATTTGTCAACAATGTC 1705
Query 1842 ACTATTGGGGTATTTGATGCTGTTGTAGGAGACATAGCTATTGTTACGAAACGAACAAGG 1901
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1706 ACTACCGGGGTATTTGATGCTGTTGTAGGAGACATAGCTATTGTTACAAAACGAACAAGG 1765
Query 1902 ATTGTGGATTTCACTCAGCCTTACATAGAATCAGGGCTTGTCGTGGTTGCTCCTGTCACA 1961
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1766 ATTGTGGATTTCACTCAGCCATACATAGAATCAGGGCTTGTCGTGGTTGCTCCTGTCACA 1825
Query 1962 AAGCTAAATGATACTCCGTGGGCGTTTTTACGCCCTTTTACACCTCCAATGTGGGCTGTT 2021
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1826 AAGCTAAACGATACTCCGTGGGCGTTCTTACGCCCTTTTACACCTCCAATGTGGGCTGTT 1885
Query 2022 ACAGCAGCTTTTTTCCTCATCGTTGGATCAGTAATATGGATTCTTGAACATAGAATCAAC 2081
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 ACAGCAGCCTTTTTCCTCATCGTTGGATCAGTAATATGGATTCTTGAACATAGAATCAAC 1945
Query 2082 GATGAGTTCCGCGGACCTCCAAGGAAACAAATTGTTACTATTCTCTGGTT------CAGC 2135
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1946 GATGAGTTCCGCGGACCTCCAAGGAAACAAATTGTTACTATTCTCTGGTTAGTAAACAGC 2005
Query 2136 TTCTCCACGATGTTTTTCTCCCACAGAGAGAACACAGTGAGTACACTCGGTCGTGCTGTT 2195
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2006 TTCTCCACAATGTTTTTCTCCCACAGAGAGAACACAGTGAGCACACTCGGTCGTGCTGTG 2065
Query 2196 CTGCTCATCTGGCTATTTGTGGTACTAATCATAACATCAAGCTACACAGCGAGTCTTACA 2255
||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 2066 CTGCTGATCTGGCTATTTGTGGTACTGATTATAACTTCAAGCTACACAGCGAGTCTTACA 2125
Query 2256 TCGATTCTTACAGTGCAACAGCTAAACTCACCAATCAGAGGAGTAGACACACTCATCAGC 2315
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2126 TCGATTCTTACAGTGCAACAGCTAAACTCACCGATCAGAGGAGTAGACACACTCATCAGC 2185
Query 2316 AGCAGTGGACGAGTTGGGTTTCAGGTAGGTTCTTATGCAGAAAACTACATGATTGATGAG 2375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2186 AGCAGTGGACGAGTTGGGTTTCAGGTAGGTTCTTATGCAGAAAACTACATGATTGATGAG 2245
Query 2376 CTTAACATTGCCAGATCCAGACTTGTACCACTCGGCTCTCCTAAAGAATACGCTGCAGCT 2435
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2246 CTTAACATCGCCAGATCCAGACTTGTACCACTCGGCTCTCCTAAAGAATACGCTGCAGCT 2305
Query 2436 CTTCAAAACGGAACTGTTGCTGCAATTGTTGATGAGCGTCCTTACGTTGATCTCTTCCTC 2495
||||||||||||||||||||||||||||| ||||| || |||||| ||||||||||||||
Sbjct 2306 CTTCAAAACGGAACTGTTGCTGCAATTGTCGATGAACGCCCTTACATTGATCTCTTCCTC 2365
Query 2496 TCAGAATTCTGCGGATTTGCCATTAGAGGCCAAGAATTCACCAGAAGTGGCTGGGGATTT 2555
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 TCGGAATTTTGCGGATTTGCCATTAGAGGCCAAGAATTCACCAGAAGTGGCTGGGGATTT 2425
Query 2556 GCATTTCCAAGAGACTCTCCATTAGCAATCGACATGTCAACCGCGATCTTAGGTCTATCA 2615
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2426 GCATTTCCAAGAGACTCTCCATTAGCAGTCGACATGTCAACCGCGATCTTAGGTCTATCT 2485
Query 2616 GAAACCGGACAGCTTCAAAAGATCCATGACAAGTGGCTTTCAAGATCTAACTGCAGTAAC 2675
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2486 GAGACGGGACAGCTTCAAAAGATTCATGACAAGTGGCTTTCAAGATCTAACTGCAGTAAC 2545
Query 2676 CTCAACGGTTCAGTGTCAGATGAAGATTCAGAACAGCTTAAACTCCGAAGCTTCTGGGGA 2735
| || ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2546 CAGAAGGGTTCAGAGTCAGATGAGGATTCAGAACAGCTTAAACTCCGTAGCTTCTGGGGA 2605
Query 2736 TTATTCCTTGTGTGTGGGATCTCTTGTTTTATCGCTCTCTTCATCTACTTCTTCAAGA-T 2794
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || |
Sbjct 2606 TTATTCCTTGTGTGTGGGATCGCTTGTTTTATCGCTCTTTTCATCTACTTCTTCA-GAAT 2664
Query 2795 AGTCCGCGACTTCTTCCGCCACGGCAAATATGATGAAGAAGCCACAGTACCTTCACCAGA 2854
|||||||||||||| |||||| |||| ||| |||||||| |||||||||||||||||
Sbjct 2665 AGTCCGCGACTTCTGGCGCCACAGCAAGCCTGAGGAAGAAGCTACAGTACCTTCACCAGA 2724
Query 2855 AAGTTCACGTTCTAAATCATTGCAGACATTTCTAGCTTATTTTGATGAAAAAGAAGACGA 2914
|||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct 2725 AAGTTCACGTTCTAAAACATTGCAGAGATTTTTAGCTTATTTTGATGAAAAAGAAGAAGA 2784
Query 2915 ATCCAAGAGAAGGATGAAGCGTAAACGAAACGATGATCTTTCTTTAAAGCCTTCTAGACC 2974
| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2785 AACCAAGAGAAGGTTGAAGCGTAAGCGAAACGATGATCTTTCTTTACGGCCTTCTAGACC 2844
Query 2975 AATATGACAGATCCATCAAGACTCAAGCATGAAAGATGAAGAAATGCAGACACACATACC 3034
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2845 GGTATGACAGATCCATCAATACTCAAGCATGAAAGATGAAGAAATGCAGACACA------ 2898
Query 3035 TCATACTTATATAGTAGAATGCAGATTTTGATTTTAACTGTACTTCAAGAATAAGCCTTG 3094
||||||||||||| |||||| |||| |||||||||||||| |||||
Sbjct 2899 -------------GTAGAATGCAGATATTGATTGAAACTATACTTCAAGAATAAACCTTG 2945
Query 3095 AAG-AATACGGAACATTTTTTAACCAAAGAAAGT 3127
||| ||||| |||||||||||||||| |||||||
Sbjct 2946 AAGGAATACTGAACATTTTTTAACCACAGAAAGT 2979
> Ahg906549 jgi|Araly1|906549|Al_scaffold_0003_3677
Length=2766
Score = 2019 bits (1093), Expect = 0.0
Identities = 2240/2777 (81%), Gaps = 146/2777 (5%)
Strand=Plus/Plus
Query 257 GGTTCTGTTGAGCTTCATTGTTCTTATTGGTGATGGGATG--A-TTTCAGAGGGAG---C 310
|||||| | |||||| || || || |||||| |||| || | |||||||||||| |
Sbjct 9 GGTTCTATGGAGCTTTGTTATTGTTCTTGGTGGTGGGTTGTTACTTTCAGAGGGAGCTTC 68
Query 311 TGGTT-TAAGGCCT-C-GTTATGTTGATGTTGGAGCAATATTCAGTTTAGGGA-C-TTTA 365
| ||| | |||||| | |||| || | ||||| || ||||| ||||| | | | ||
Sbjct 69 TAGTTCT-AGGCCTCCTGTTA--TTAAAGTTGGTGCTATATTTGGTTTAAACACCATGTA 125
Query 366 CAGGGTGAAGTTACAAATATTG-CTATGAAAGCTGCAGAGGAAGATGTAAATTCTGATCC 424
| |||||| | | ||||| | || | |||||||| ||||||||||| ||||| |||||
Sbjct 126 C--GGTGAAACTGCGAATATCGCCT-TTAAAGCTGCTGAGGAAGATGTCAATTCCGATCC 182
Query 425 TAGCTTCCTTGGTGGATCAAAATTGC-GTATAACGACGTATGATGC-AAAGCGTAATGGA 482
||||||||| |||||||| || |||| | || || | ||||||| ||| || | ||||
Sbjct 183 TAGCTTCCTCGGTGGATCGAAGTTGCAG-ATTTTGATGAATGATGCTAAA-CGCAGTGGA 240
Query 483 TTCCTCACCATCATGGGAGCTTTGCAATTCATGGAGACTGATGCTGTGGCTATCATTGGT 542
||||||| |||||||||||| |||||||||||||||||| |||| ||||| || ||||||
Sbjct 241 TTCCTCAGCATCATGGGAGCATTGCAATTCATGGAGACTAATGCAGTGGCGATAATTGGT 300
Query 543 CCTCAGACATCAATAATGGCTCATGTACTGTCTCATCTTGCAAATGAGCTTAGTGTGCCT 602
|| ||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||
Sbjct 301 CCACAGACATCAATAATGGCTCATGTGTTGTCTCATCTTGCCAATGAGCTTACTGTTCCG 360
Query 603 ATGTTGTCATTCACAGCT-TTAGACCCTAGTCTCTCGGCGCTTCAGTTCCCGTTCTTTGT 661
||||||||||| || ||| || || |||| || || | || || ||||| ||||||||
Sbjct 361 ATGTTGTCATTTACGGCTCTT-GATCCTACCCTGTCTCCACTCCAATTCCCATTCTTTGT 419
Query 662 CCAGACAGCACCTAGTGATCTCTTTCTGATGCGTGCCATTGCGGAAATGATAAGTTACTA 721
||| ||||||||||||||||| ||||||||||| |||||||| || ||||| | |||||
Sbjct 420 CCAAACAGCACCTAGTGATCTGTTTCTGATGCGCGCCATTGCAGAGATGATTACATACTA 479
Query 722 CGGTTGGTCAGAGGTGATTGCATTGTATAATGATGATGACAACAGTAGAAACGGTATAAC 781
||||||||||| ||| | ||||| ||||| |||||||| ||||| ||||| || | ||
Sbjct 480 TGGTTGGTCAGATGTGGTGGCATTATATAACGATGATGATAACAGCAGAAATGGCGTTAC 539
Query 782 AGCTTTAGGCGATGAGCTCGAAGGA-AGGCGCTGCAAGATTTCATACAAGGCTGTGCTTC 840
||| |||||||||||||| ||| || |||||||||| |||||| ||||||||||| ||||
Sbjct 540 AGCGTTAGGCGATGAGCTTGAA-GAGAGGCGCTGCAGGATTTCTTACAAGGCTGTACTTC 598
Query 841 CTTTGGATGTGGTGATTACGAGTCCTCG-TGAGATTATAAATGAGTTGGTTAAGATTCAA 899
| |||||||| |||||||| ||||| | |||||||||| | |||||| |||||| ||
Sbjct 599 CGTTGGATGTTGTGATTACTAGTCC-AGTTGAGATTATAGAGGAGTTGATTAAGA-TCCG 656
Query 900 GGG-ATGGAATCTCGGGTAATCATTGTGAACACTTTCCCTAAA-ACAGGTAAGAAAATCT 957
||| |||||||||||||| |||||||||||||||||||| ||| ||||| |||| ||||
Sbjct 657 GGGAATGGAATCTCGGGTTATCATTGTGAACACTTTCCC-AAATACAGGCAAGATGATCT 715
Query 958 TTGAGGAAGCCCAG-AAGCTT-GGCATGATGGAGAAAGGCTATGTTTGGATAGCTACAAC 1015
|| |||||| ||| ||| || || |||||||||||||||||||||||||||||||||||
Sbjct 716 TTAAGGAAG--CAGAAAGATTAGGGATGATGGAGAAAGGCTATGTTTGGATAGCTACAAC 773
Query 1016 TTGGTTGACTTCTCTGTTAGATTC-TGTTAACCCGTTACCTGCCAAGACTGCTGAATCTC 1074
||||||| |||||||| ||||||| || || || | |||| | | | | |||
Sbjct 774 TTGGTTGTCTTCTCTGCTAGATTCAAATT-TTCCTTTGGATACCAA-A-T--T--A-CTC 825
Query 1075 TTAGA-GGCGTGCTTACTCTTCGTATTCACACGCCA-AATTCaaaaaagaaaaaaGA-TT 1131
| | || || || || || ||| |||| |||||| || || | |||||| | || ||
Sbjct 826 --A-ATGGAGTTCTAACACTGCGTCTTCATACGCCAGAA-TCGAGAAAGAAGAGGGACTT 881
Query 1132 TCGTGGCACGGT-G--GAACAAGTTGAG---TAACGGGACTGTCGGTTTAAACGTTTATG 1185
| | ||||||| | |||||||||||| ||| |||| | || || || || ||||
Sbjct 882 T-GCAGCACGGTGGAAGAACAAGTTGAGTAATAATAAGACTATTGGGTTGAATGTCTATG 940
Query 1186 GTCTCTATGCTTATGATACTGTCTGGATCATTGCTCGAGCTGTTAAGAGACTTCTAGATA 1245
|||| ||||||||||||||||||||||||||||||||||| |||||| |||||| || |
Sbjct 941 GTCTGTATGCTTATGATACTGTCTGGATCATTGCTCGAGCCATTAAGACACTTCTGGA-A 999
Query 1246 GCAG-AGCTAA-CATTTCCTTCTCTAGTGACCCAAAGTTAACCAGCATGAAGGGAGGAGG 1303
|| | || ||| | |||||||||| ||||| |||||||| |||| |||| || | |||
Sbjct 1000 GCTGGAGGTAATC-TTTCCTTCTCCAGTGATGCAAAGTTAGGCAGCTTGAAAGGTG-AGG 1057
Query 1304 GTCACTGAATCTAGGTGCATTGAGCATATTTGACCAAGGATCACAATTTCTTGATTATAT 1363
|| |||||||| ||||||| |||| |||||| |||||||||||| |||||||||||||
Sbjct 1058 --CATTGAATCTAAGTGCATTAAGCAGATTTGATCAAGGATCACAACTTCTTGATTATAT 1115
Query 1364 TGTGAATACAAATATGACTGGTGTTACAGGTCAAATACAGTTTCTTCCTGACAGATCAAT 1423
|||| ||||||| ||| | ||| | || |||| | || |||| ||| |||||||||||
Sbjct 1116 TGTGCATACAAAGATGTCCGGTCTAACTGGTCCGGTTCAATTTCATCCAGACAGATCAAT 1175
Query 1424 GATACAGCCCTCATATGACATCATAAACGTGGTTGATGACGGGTTTAGGCAGATAGGGTA 1483
| |||| || |||||||| || || || ||||||||||| | ||| || ||||| ||
Sbjct 1176 GCTACATCCTTCATATGATATTATCAATTTGGTTGATGACAGCATTAACCAAATAGGTTA 1235
Query 1484 TTGGTCTAACCATTCCGGGCTCTCTATTATACCTCCAGAGTCACTATACAA-AAAGCTTT 1542
||||||||| |||| || || |||||| |||| || || ||| | |||| ||| ||
Sbjct 1236 CTGGTCTAACTATTCTGGTCTTTCTATTGTACCGCCTGAATCATTTTACAGCAAACCTC- 1294
Query 1543 CAAATCGTTCGAGCTCAAACCAACATCTGAACAATGTGACTTGGCCTGGTGGGACTTCTG 1602
| || | ||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1295 CTAACCATTCTAGCTCAAACCAACATCTGAACTCTGTAACTTGGCCTGGTGGGACTTCA- 1353
Query 1603 AG-ACACCACGTGGTTGGGTTTTTCCTAACAACGGGAGACGATTGAGAATCGGTGTACCC 1661
| ||||| || || |||||||||| |||||| || || || |||||||||||||| ||
Sbjct 1354 ATTACACCTCGCGGATGGGTTTTTCGTAACAATGGAAGGCGGTTGAGAATCGGTGTTCCT 1413
Query 1662 GATAGAGCAAGTTTTAAGGAGTTTGTGTCAAG-GTTGGATGGAAG---CAACAAAGTGCA 1717
||||||||||| || ||||| ||||| ||||| || ||||||| ||||||||| ||
Sbjct 1414 GATAGAGCAAGCTTCAAGGACTTTGTCTCAAGAGTCA-ATGGAAGTAGCAACAAAGTACA 1472
Query 1718 AGGGTAT-GCCATTGATGTCTTTGAAGCTGCGGTAAAACTGATTTCTTATCCGGTTCCTC 1776
|| ||| || |||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 1473 CGGATATTGC-ATTGATGTATTTGAAGCTGCGGTGAAACTGCTTTCTTATCCGGTTCCTC 1531
Query 1777 ATGAGTTCGTCCTATTT-GGAGACGGTCTCAA-GAACCCAAACTTCAATGAATTTGTCAA 1834
| |||||| || | ||| ||||| ||||| || ||| ||||||| |||||| | |||||
Sbjct 1532 ACGAGTTCATCTT-TTTCGGAGATGGTCT-AACGAATCCAAACTACAATGAGCTGGTCAA 1589
Query 1835 CAATGTCACTATTGGGGT--A-TTTGATGCTGTTGTAGGAGACATAGCTATTGTTACGAA 1891
||| ||||||| |||||| | ||||||||||||||||| |||||||| ||||| || ||
Sbjct 1590 CAAGGTCACTACTGGGGTGGACTTTGATGCTGTTGTAGGCGACATAGCCATTGTCACCAA 1649
Query 1892 ACGAAC-AAGGATTGTGGATTTCACTCAGCCTTACATAGAATCAGGGCTTGTCGTGGTTG 1950
|| || ||| |||||||||||||| ||||| ||||| || ||||| || ||||| ||||
Sbjct 1650 GCGGACCAAG-ATTGTGGATTTCACCCAGCCATACATTGAGTCAGGCCTCGTCGTTGTTG 1708
Query 1951 CTCCTGTCACAA-AGCTAAATGATACTCCGTGGGCGTTTTTACGCCCTTTTACACCTCCA 2009
|||||||||||| | || || || | ||| ||||| ||||||||||| ||||| | |||
Sbjct 1709 CTCCTGTCACAAGA-CTTAACGACAATCCTTGGGCCTTTTTACGCCCGTTTACTCTTCCT 1767
Query 2010 ATGTGGGCTGTTACAGCAGCTTTTTTCCTCATCGTTGGATCAGTAATATGGATTCTTGAA 2069
|||||||| || |||||| |||||||| | || |||||| | | ||||||||||||||||
Sbjct 1768 ATGTGGGCAGTAACAGCATCTTTTTTCGTTATTGTTGGAGCTGCAATATGGATTCTTGAA 1827
Query 2070 CATAGAATCAACGATGAGTTCCGCGGACCTCCAAGGAA-ACAAATTGTTACTATTCTCTG 2128
|| | || || |||||||| || || || ||||| || |||||| |||| ||||||||
Sbjct 1828 CACCGTATAAATGATGAGTTTCGTGGTCCGCCAAG-AAGACAAATCATTACCATTCTCTG 1886
Query 2129 GTTCAGCTTCTCCACGATGTTTTTCTCCCACAGAGAGAAC-ACAGTGAGTACACTCGGTC 2187
||||| ||| || ||||||||||||||||||||||||| | |||||||| || || ||||
Sbjct 1887 GTTCACCTTTTCGACGATGTTTTTCTCCCACAGAGAGA-CTACAGTGAGCACGCTTGGTC 1945
Query 2188 GTGCTGTT-CTGCTCATCTGGCTATTTGTGGTACTAATCATAACATCAAGCTACACAGCG 2246
|| || | || || || ||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct 1946 GTA-TGGTGCTTCTGATATGGCTTTTTGTGGTTCTGATCATTACATCTAGCTACACAGCG 2004
Query 2247 AGTCTTACATCGATTCTTACAGTGCAACAGCTAAACTCACCAATCAGAGGAGTAGACACA 2306
|||||||||||||| ||||||||||||||||| || ||||| || | ||||||||| |||
Sbjct 2005 AGTCTTACATCGATACTTACAGTGCAACAGCTCAATTCACCTATAAAAGGAGTAGATACA 2064
Query 2307 CTCATCAGCAGCAGTGGACG-AGTTGGGTTTCAGGTAGGTTCTTATGCAGAAAACTACAT 2365
|||||||| |||||||| || | |||| || ||||| ||||||| ||| |||||||||||
Sbjct 2065 CTCATCAGTAGCAGTGGTCGTA-TTGGCTTCCAGGTTGGTTCTTTTGCTGAAAACTACAT 2123
Query 2366 GATTGATGAGCTTAACATTGCCAGATCCAGACTTGTACCACTCGGCTCTCCTAAAGAATA 2425
|| |||||||||||||||||||||||||||||||| || |||| ||||||| | |||||
Sbjct 2124 GACCGATGAGCTTAACATTGCCAGATCCAGACTTGTGCCTCTCGCCTCTCCTGAGGAATA 2183
Query 2426 CGCTGCA-GCTCTTCAAAACGGAACTGTTGCTGCAATTGTTGATGAGCGTCCTTACGTTG 2484
||| | || |||||||| || ||||||||||||||||||||||| |||||||| |||
Sbjct 2184 TGCTA-ATGCACTTCAAAATGGTACTGTTGCTGCAATTGTTGATGAACGTCCTTATATTG 2242
Query 2485 ATCTCTTCCTCTCAGAATT-CTGCG-GATTTGCCATTAGAGGCCAAGAATTCACCAGAAG 2542
|||||||||| ||| |||| ||| | |||||||| ||||||||||||||||||||| |
Sbjct 2243 ATCTCTTCCTTTCA-AATTACTGTAAG-TTTGCCATCAGAGGCCAAGAATTCACCAGATG 2300
Query 2543 TGGCTGGGGATTTGCATTTCCAAGAGACTCTCCATTAGCAATCGACATGTCAACCGCGAT 2602
|| |||||||||||||| || ||||||||||| |||||| | |||||||||||||||||
Sbjct 2301 CGGTTGGGGATTTGCATTCCCGAGAGACTCTCCTTTAGCAGTTGACATGTCAACCGCGAT 2360
Query 2603 -CTTAGGTCTATCAGAAACCGGAC-AGCTTCAAAAGATCCATGACAAGTGGCTTTC-AAG 2659
||| || ||||| ||||| || | | ||||| |||||||||||||| ||||| || ||
Sbjct 2361 TCTTGGG-CTATCCGAAACTGG-CGAACTTCAGAAGATCCATGACAAATGGCTGTCGAA- 2417
Query 2660 ATCTAACTGCAGTAACCT-CAACGG-T-TCAGTGTCAGATGAAGATTCAGAACAGCTTAA 2716
|||||||||||| | || || ||| | ||||| ||| ||| | |||||||||| ||
Sbjct 2418 ATCTAACTGCAGCAGCCCGCA-CGGGTCTCAGT--CAGGTGAC--T-CAGAACAGCTCAA 2471
Query 2717 AC-TCCGA-AGCTTCTGGGG-ATTATTCCTTGTGTGT-GGGATCTCTTGTTTTATCGCTC 2772
| | | | ||||||||||| || ||||||||| || ||||| | ||| | ||||||
Sbjct 2472 -CGTGC-ATAGCTTCTGGGGCATG-TTCCTTGTG-GTTGGGATAGCCTGTCTCGTCGCTC 2527
Query 2773 TCTTCATCTACTTCTTCAAGATAGTCCGCGACTTCTTCCG-C-CACGGCA--AA-TATGA 2827
|||| ||| |||||||||| |||||||||||||||| | | ||| || || || ||
Sbjct 2528 TCTTTATCCACTTCTTCAAAATAGTCCGCGACTTCTGCAAACACACA-CATGAAGTA-GA 2585
Query 2828 TGAAGAAGCCA-C-AGTACCTTCACCAGAAAG-TTCACGTTCT-A-AAT-CATTGCAGAC 2881
||||||| | | | ||||||||||| |||| |||||||| | | || | | |||||
Sbjct 2586 AGAAGAAGA-AGCTA-TACCTTCACCA-AAAGCTTCACGTT-TGACAAAGC-TA-CAGAC 2639
Query 2882 ATTTCTAGCTTATT-TTGATGAAAAAGAAGACGAATCCAAGAGAAGGATGAAGCGTAAAC 2940
|||||||| | || ||||||| |||||||| ||| | ||| ||||| | ||||| |||
Sbjct 2640 TTTTCTAGCAT-TTGTTGATGAGAAAGAAGAAGAAACAAAGCGAAGGTTCAAGCGCAAAA 2698
Query 2941 GAAACGATGATCTTTCT 2957
||||| | |||||||||
Sbjct 2699 GAAACAACGATCTTTCT 2715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121088888855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5