BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35310.1
Length=2263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480614 jgi|Araly1|480614|fgenesh2_kg.3__3315__AT2G17290.1 1748 0.0
Ahg491116 jgi|Araly1|491116|fgenesh2_kg.7__549__AT4G35310.1 1589 0.0
Ahg888029 jgi|Araly1|888029|Al_scaffold_0007_15 1050 0.0
Ahg929969 jgi|Araly1|929969|scaffold_302426.1 219 1e-55
> Ahg480614 jgi|Araly1|480614|fgenesh2_kg.3__3315__AT2G17290.1
Length=2289
Score = 1748 bits (946), Expect = 0.0
Identities = 1461/1704 (86%), Gaps = 58/1704 (3%)
Strand=Plus/Plus
Query 219 TTGTTTCATGGGCAATTCTTGCCGTGGATCTTTCAAGGACAAACTCGACGAAGGCGATAA 278
|||||||||||||||||| || ||||| ||||| ||||||||| || |||| ||| ||||
Sbjct 279 TTGTTTCATGGGCAATTCATGTCGTGGTTCTTTTAAGGACAAAATCTACGAGGGCAATAA 338
Query 279 CAATAAGCCTGAAGATTACTCTAAAACCTCTACCACCAACTTGTCTTCTAATTCCGACCA 338
| || ||| || || | || ||| || |||||| || ||| |||| || | ||
Sbjct 339 TAGTAGGCCCGAGGAGAATTC-CAAA--TCCACCACC-AC-TGT-TTCTTCCTCTGTTCA 392
Query 339 TTCACCGAACGCTGCAG-ACATCATTGCT-C-AAGAATTCTCCAAAGACA--ACAAC-AG 392
||| ||| || | ||| ||| ||| || | ||||| || |||| ||| ||||| ||
Sbjct 393 TTCTCCG-AC-C-ACAGAACAAGATTTCTCCAAAGAA-GCT-CAAAAACAGGACAACAAG 447
Query 393 CAACAACAAC-AGCAA-AGATCCAGCTCTTGTTATTCCT-TTAAGAGAACCAATCATGAG 449
||||||||| || || | ||||||||||||| |||||| || |||||||| || ||| |
Sbjct 448 -AACAACAACAAG-AACA-ATCCAGCTCTTGTGATTCCTGTT-AGAGAACCCATTATGCG 503
Query 450 GCGTAACCCAGACAATCAAGCTTACTATGTTCTTGGTCATAAGACACCAAACATTCGTGA 509
||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 504 GCGTAACGTTGACAATCAAGCTTACTATGTTCTTGGTCACAAGACTCCTAACATTCGTG- 562
Query 510 TATCTATAC-CCTT-AGCCGCAAGCTAGGTCAAGGTCAATTTGGAACGACTTATCTATGT 567
|||| ||| | || ||||| ||| |||| ||||| ||||| || || || ||| | |||
Sbjct 563 -ATCTTTACACGTTGAGCCGTAAGTTAGGACAAGGACAATTCGGTACAACGTATTTGTGT 621
Query 568 ACAGAGATTGCCT-CAGGCGTTGACTACGCTTGTAAGTCAATATCCAAGAGGAAGTTGAT 626
|| ||| ||| || |||| ||| || ||||||||||| |||||||||||||| || ||
Sbjct 622 ACTGAGGTTG-CTACAGGTAATGATTATGCTTGTAAGTCTATATCCAAGAGGAAATTAAT 680
Query 627 CTCTAAAGAAGATGTTGAGGATGTTAGAAGGGAGATTCAGATAATGCATCATTTAGCTGG 686
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 ATCTAAAGAAGATGTTGAAGATGTTAGGAGGGAGATTCAGATAATGCATCATTTAGCTGG 740
Query 687 TCAC-GGTAGTATCGTGACGATTAAAGGAGCTTATGAGGACT-CTTTGTATGTTCACATT 744
||| | | || || ||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 741 CCACAAG-AACATTGTTACGATTAAAGGAGCTTATGAGGA-TCCTTTGTTTGTTCACATT 798
Query 745 GTTATGGAGCTTTGTGCTGGAGGTGAATTGTTTGATAGGATTATTCAGAGAGGACATTAT 804
|| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct 799 GTGATGGAGCTTTGTGCTGGTGGTGAGTTATTTGATAGGATTATTCATAGAGGGCATTAC 858
Query 805 AGTGAGAGGAAAGCTGCTGAGCTGACTAAGATCATTGTCGGTGTTGTTGAAGCGTGTCAT 864
|| |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||
Sbjct 859 AGCGAGAGGAAAGCTGCTGAGTTGACCAAGATCATTGTCGGGGTTGTTGAGGCGTGTCAT 918
Query 865 TCGCTTGGTGTGATGCATAGAGACTTGAAGCCTGAGAATTTCTTATTGGTTAATAAGGAT 924
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 919 TCGCTTGGTGTTATGCATAGAGACTTAAAGCCTGAGAATTTCTTGTTGGTTAATAAGGAT 978
Query 925 GATGATTTCTCTCTCAAGGCTATTGATTTTGGGCTATCTGTCTTT-TTCAAACCAGGTCA 983
|||||||| ||||| ||||| ||||||||||| || ||||| ||| ||||||||||| ||
Sbjct 979 GATGATTTTTCTCTTAAGGCCATTGATTTTGGCCTCTCTGT-TTTCTTCAAACCAGGCCA 1037
Query 984 AATATTCACTGATGTTGTTGGAAGTCCATATTATGTTGCTCCTGAGGTT-TTGCTCAAAC 1042
|||||||| ||||| |||||||||||||| |||||||||||||||||| || || ||||
Sbjct 1038 AATATTCAAGGATGTAGTTGGAAGTCCATACTATGTTGCTCCTGAGGTTCTT-CTTAAAC 1096
Query 1043 GTTATGGGCCTGAAGCTGATGTGTGGACTGCTGGTGTTATATTGTATATATTGCTAAGCG 1102
|||||| || |||||||||||||||||||||||||||||| | || || || ||||| |
Sbjct 1097 ATTATGGTCCAGAAGCTGATGTGTGGACTGCTGGTGTTATACTATACATTTTACTAAGTG 1156
Query 1103 GAGTCCCACCTTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCTGTGTTGAAAGGAT 1162
| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1157 GTGTCCCGCCTTTTTGGGCAGAAACACAGCAAGGAATATTTGATGCTGTGTTGAAAGGAT 1216
Query 1163 ATATCGACTTTGAGTCAGACCCGTGGCCTGTGATATCCGACAGTGCTAAAGA-CTTGATC 1221
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1217 ATATCGACTTTGAGTCAGACCCGTGGCCTGTGATATCCGACAGTGCTAAAGATCT-GATC 1275
Query 1222 CGCA-GAATGTTATCCTCCAAG-CC-TGCAGAACGTTTGACCGCTCATGAAGTCTTGCGT 1278
|| | || |||||| ||||| | || | | ||||||||||||||||||||||||||||||
Sbjct 1276 CGGAAGA-TGTTATGCTCCA-GTCCCT-CTGAACGTTTGACCGCTCATGAAGTCTTGCGT 1332
Query 1279 CATCCATGGATCTGTGAGAATGGTGTTGCACCAGATAGAGCACTAGATCCAGCTGTTCTT 1338
|||||||||||||||||||| || |||||||| ||||||||||| || || |||||| ||
Sbjct 1333 CATCCATGGATCTGTGAGAACGGAGTTGCACCCGATAGAGCACTTGACCCGGCTGTT-TT 1391
Query 1339 -TCTCGTCTCAAGCAATTCTCTGCAATGAATAAACTAAAGAAGATGGCTTTGAAGGTTAT 1397
||||| ||||| || || ||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 1392 ATCTCGCCTCAAACAGTTTTCTGCAATGAATAAATTAAAGAAGATGGCTTTAAAGGTGAT 1451
Query 1398 AGCTGAGAGTCTCTCGGAAGAAGAGATAGCTGGTTTAAGAGAAATGTTTCAAGCAATGGA 1457
||||||||| ||||| ||||||||||| || |||||||||| ||||||| | ||||||||
Sbjct 1452 AGCTGAGAGCCTCTCAGAAGAAGAGATTGCGGGTTTAAGAGCAATGTTTGAGGCAATGGA 1511
Query 1458 TACTGATAACAGCGGGGCAATCACATTTGATGAACTCAAAGCTGGGCT-GAGAAAATATG 1516
||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||
Sbjct 1512 TACAGATAACAGCGGTGCAATCACTTTTGATGAACTCAAAGCTGG-CTTGAGAAGATATG 1570
Query 1517 GATCTACCTTGAAAGACACAGAGATCC-ATGATCTTATGGATGCGGCTGATGTAGACAAC 1575
| || |||||||||||||| ||||||| | ||||||||||| ||||||||||| ||||||
Sbjct 1571 GTTCAACCTTGAAAGACACCGAGATCCGA-GATCTTATGGAAGCGGCTGATGTGGACAAC 1629
Query 1576 AGTGGGACAATAGATTACAGTGAGTTCATTGCAGCGACGATCCATCTCAACAAACTAGAG 1635
|| || |||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1630 AGCGGTACAATAGATTACAGTGAGTTTATTGCAGCGACGATCCATCTGAATAAACTAGAG 1689
Query 1636 CGGGAAGAGCATCTTGT-TGCAGCGTTTCAATATTTTGACAAAGATGGAAGCGGTTTCAT 1694
| |||||||||||||| | | || |||||||| ||||||||||||||||| |||| |||
Sbjct 1690 AGAGAAGAGCATCTTGTCT-CTGCATTTCAATACTTTGACAAAGATGGAAGTGGTTACAT 1748
Query 1695 AACAATTGATGAGCTACAACAAG-CGTGTGTTGAACATGGCATGGCTGATGTTTTCCTTG 1753
|| ||||||||||| ||||| | |||| |||||||||| ||| | |||||||| ||||
Sbjct 1749 CACCATTGATGAGCTGCAACA-GTCGTGCATTGAACATGGGATGACCGATGTTTTTCTTG 1807
Query 1754 AAGACATCATCAAAGAAGTTGATCAAAACAATGATGGAAAGA-TTGATTATGGTGAGTTT 1812
||||| | ||||||||||| |||||| |||| |||||| || ||||||| | || |||
Sbjct 1808 AAGACGTAATCAAAGAAGTAGATCAAGACAACGATGGAC-GAATTGATTACGAAGAATTT 1866
Query 1813 GTGGAGATGATGCAAAAGGGAAATGCTGGTGTTGGAAGAAGGACGATGAGAAATAGTCTA 1872
|| | ||||||||||||||||||||||||||| || ||||| || |||| ||||||||||
Sbjct 1867 GTTGCGATGATGCAAAAGGGAAATGCTGGTGTCGGGAGAAGAACAATGAAAAATAGTCTA 1926
Query 1873 AACATTAGCATGAGAGACGCGTAG 1896
||||| ||||||||||| | ||||
Sbjct 1927 AACATCAGCATGAGAGATGTGTAG 1950
> Ahg491116 jgi|Araly1|491116|fgenesh2_kg.7__549__AT4G35310.1
Length=2046
Score = 1589 bits (860), Expect = 0.0
Identities = 1000/1062 (94%), Gaps = 32/1062 (3%)
Strand=Plus/Plus
Query 93 CATTCTTTCAGTCTTCTCTTTCGCCCTTCTGAGTTCAACAACTGTGTTATCTCTATGAAC 152
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||
Sbjct 1 CATTCTTTCAGTCTTCTCTCTCGGCCTTCTGAGTTCAACAGCTGTGTTATCTCTATGAAC 60
Query 153 AGTTCCTTTGATGAAGAACACAAAGTGAAAGTTGCTGTCTTTATAA-CCAGGATTTGGT- 210
|||||||| ||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 61 AGTTCCTTGGATGAAGAACACAAACTGAAAGTTGCTGTCTTTA-AATCCAGGATTTGGTA 119
Query 211 AATTCCCATTGTTTCATGGGCAATTCTTGCCGTGGATCTTTCAAGGACAAACTC-GACGA 269
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 120 AATTCCCATTGTTTCATGGGCAATTCTTGCCGTGGATCTTTCAAGGACAAAATCTG-CGA 178
Query 270 AGGCGATAACAATAAGCCTGAAGATTACTCTAAAACCTCTACCACCAACTTGTCTTCTAA 329
||| |||||||||| |||||||||||||||||||||||| | | | || | |
Sbjct 179 GGGCAATAACAATAACCCTGAAGATTACTCTAAAACCTCT-----C-A--T-TC--C-GA 226
Query 330 TTCCGACCATTCACCGAACGCTGCAGACATCATTGCTCAAGAATTCTCCAAAGACAACAA 389
| | | | || || |||||||||||||||||||||||||||||||||||||
Sbjct 227 -T-C-A-C--TCCCCCAACGCTGCAGACATCATTGCTCAAGAATTCTCCAAAG------- 273
Query 390 CAGCAACAACAACAGCAAAGATCCAGCTCTTGTTATTCCTTTAAGAGAACCAATCATGAG 449
| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 274 -A-CAACAACAACAGCAAAAATCCAGCTCTTGTTATTCCTTTAGGAGAACCAATCATGAG 331
Query 450 GCGTAACCCAGACAATCAAGCTTACTATGTTCTTGGTCATAAGACACCAAACATTCGTGA 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GCGTAACCCAGACAATCAAGCTTACTATGTTCTTGGTCATAAGACACCAAACATTCGTGA 391
Query 510 TATCTATACCCTTAGCCGCAAGCTAGGTCAAGGTCAATTTGGAACGACTTATCTATGTAC 569
| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 392 TTTCTATACCCTTAGCCGTAAGCTAGGACAAGGTCAATTTGGAACGACTTATCTATGTAC 451
Query 570 AGAGATTGCCTCAGGCGTTGACTACGCTTGTAAGTCAATATCCAAGAGGAAGTTGATCTC 629
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 AGAGATTGCCTCTGGCGTTGACTACGCTTGTAAGTCAATATCCAAGAGGAAGTTGATCTC 511
Query 630 TAAAGAAGATGTTGAGGATGTTAGAAGGGAGATTCAGATAATGCATCATTTAGCTGGTCA 689
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 512 TAAAGAAGATGTTGAGGATGTTAGAAGGGAGATTCAGATAATGCATCATTTGGCTGGCCA 571
Query 690 CGGTAGTATCGTGACGATTAAAGGAGCTTATGAGGACTCTTTGTATGTTCACATTGTTAT 749
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CGGAAACATCGTGACGATTAAAGGAGCTTATGAGGACTCTTTGTATGTTCACATTGTTAT 631
Query 750 GGAGCTTTGTGCTGGAGGTGAATTGTTTGATAGGATTATTCAGAGAGGACATTATAGTGA 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GGAGCTTTGTGCTGGAGGTGAATTGTTTGATAGGATTATTCAGAGAGGACATTATAGTGA 691
Query 810 GAGGAAAGCTGCTGAGCTGACTAAGATCATTGTCGGTGTTGTTGAAGCGTGTCATTCGCT 869
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 692 GAGGAAAGCTGCTGAGCTGACTAAGATCATTGTCGGGGTTGTTGAAGCGTGTCATTCGCT 751
Query 870 TGGTGTGATGCATAGAGACTTGAAGCCTGAGAATTTCTTATTGGTTAATAAGGATGATGA 929
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 752 TGGTGTTATGCATAGAGACTTGAAGCCTGAGAATTTCTTGTTGGTTAATAAGGATGATGA 811
Query 930 TTTCTCTCTCAAGGCTATTGATTTTGGGCTATCTGTCTTTTTCAAACCAGGTCAAATATT 989
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 812 TTTCTCTCTCAAGGCTATTGATTTTGGCCTATCTGTCTTTTTCAAACCAGGTCAAATATT 871
Query 990 CACTGATGTTGTTGGAAGTCCATATTATGTTGCTCCTGAGGTTTTGCTCAAACGTTATGG 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CACTGATGTTGTTGGAAGTCCATATTATGTTGCTCCTGAGGTTTTGCTCAAACGTTATGG 931
Query 1050 GCCTGAAGCTGATGTGTGGACTGCTGGTGTTATATTGTATATATTGCTAAGCGGAGTCCC 1109
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 932 GCCTGAAGCTGATGTGTGGACTGCTGGTGTTATACTGTATATATTGCTAAGTGGAGTCCC 991
Query 1110 ACCTTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCTGT 1151
|||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GCCTTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCTGT 1033
Score = 1375 bits (744), Expect = 0.0
Identities = 905/978 (93%), Gaps = 29/978 (3%)
Strand=Plus/Plus
Query 1277 GTCATCCATGGATCTGTGAGAATGGTGTTGCACCAGATAGAGCACTAGATCCAGCTGTTC 1336
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1090 GTCATCCATGGATCTGTGAGAATGGTGTTGCACCAGATAGAGCACTTGATCCAGCTGTTC 1149
Query 1337 TTTCTCGTCTCAAGCAATTCTCTGCAATGAATAAACTAAAGAAGATGGCTTTGAAGGTTA 1396
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGTCTCGTCTCAAGCAGTTCTCTGCAATGAATAAACTAAAGAAGATGGCTTTGAAGGTTA 1209
Query 1397 TAGCTGAGAGTCTCTCGGAAGAAGAGATAGCTGGTTTAAGAGAAATGTTTCAAGCAATGG 1456
|||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 1210 TAGCTGAGAGCCTCTCGGAAGAAGAGATTGCTGGCTTAAGAGAAATGTTTCAGGCAATGG 1269
Query 1457 ATACTGATAACAGCGGGGCAATCACATTTGATGAACTCAAAGCTGGGCTGAGAAAATATG 1516
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1270 ATACTGATAACAGCGGTGCAATAACATTTGATGAACTCAAAGCTGGGCTGAGAAAATATG 1329
Query 1517 GATCTACCTTGAAAGACACAGAGATCCATGATCTTATGGATGCGGCTGATGTAGACAACA 1576
|||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct 1330 GATCTACCTTAAAAGACACAGAGATTCATGATCTAATGGAAGCGGCTGATGTGGACAACA 1389
Query 1577 GTGGGACAATAGATTACAGTGAGTTCATTGCAGCGACGATCCATCTCAACAAACTAGAGC 1636
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1390 GTGGGACAATAGATTACAGTGAATTCATTGCAGCGACGATTCATCTCAACAAACTGGAGC 1449
Query 1637 GGGAAGAGCATCTTGTTGCAGCGTTTCAATATTTTGACAAAGATGGAAGCGGTTTCATAA 1696
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1450 GGGAAGAGCATCTTGTCGCAGCGTTTCAATACTTTGACAAAGACGGAAGCGGTTTCATAA 1509
Query 1697 CAATTGATGAGCTACAACAAGCGTGTGTTGAACATGGCATGGCTGATGTTTTCCTTGAAG 1756
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 CAATCGATGAGCTGCAACAAGCGTGTGTTGAACATGGCATGGCTGATGTTTTCCTTGAAG 1569
Query 1757 ACATCATCAAAGAAGTTGATCAAAACAATGATGGAAAGATTGATTATGGTGAGTTTGTGG 1816
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 ATATCATCAAAGAAGTTGATCAAAACAATGATGGAAAGATTGATTATGGTGAGTTTGTGG 1629
Query 1817 AGATGATGCAAAAGGGAAATGCTGGTGTTGGAAGAAGGACGATGAGAAATAGTCTAAACA 1876
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1630 AGATGATGCAAAAGGGAAATGCTGGTGTTGGAAGAAGAACGATGAGAAATAGTCTAAACA 1689
Query 1877 TTAGCATGAGAGACGCGTAGAGGTTGTTTTCCCCGGTGTTTAATATG-TTAGTGCGATCG 1935
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct 1690 TTAGCATGAGAGACGCGTAGAGGTTGTTTTCCCCGGTGTTTAATTTGCTT-GTGCGATTG 1748
Query 1936 TGACTGCGAAAATGTTCTT-ATTCATGGAATCAACAACCTCAATGCTCACCACCTAGAAG 1994
||||||| ||||||||||| |||||||||||| || || | | | ||||||
Sbjct 1749 TGACTGCAAAAATGTTCTTTATTCATGGAATC--CA-CC--A---C--A-----TAGAAG 1793
Query 1995 GCGATGAAAGAAGACCAAACCGGATTCATACCTGTGGATGGTTCGAGTTT-TGTTTAACG 2053
| || |||||||||||||||| |||||||| |||||||||||||||| | |||||||||
Sbjct 1794 GAGAAGAAAGAAGACCAAACCAGATTCATAGCTGTGGATGGTTCGAGCTAATGTTTAACG 1853
Query 2054 ACTGTGTGATTAATCGTCAAGTAGTTTTGGAGGTTTTTTCTTT-ACCTCTTTGTTGTTTG 2112
|||||||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||
Sbjct 1854 ACTGTGTGATTAATCGTCGAGTAGGTTTGGAGGTTTTTTCTTTTACCTCTGTGTTGTTTG 1913
Query 2113 TTCATTATGGCCATTGTTGAAGTTAGTGAGCTTTGTTCATCATCTGCCATTGTTAAA-CT 2171
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1914 TTTGTTATGGCCATTGTTGAAGTTAGTGAGCTTTGTTCATTATCTGCCATTGTTAAAACT 1973
Query 2172 TTGTTCACT-T-GTATTTGaaaaaaacaaaaa-TGTCTTTGTATGTTGTGTGATTTCTAA 2228
||||||||| | |||||||||||||||||| |||||||||||| | ||| ||||
Sbjct 1974 TTGTTCACTCTTGTATTTGAAAAAAACAAAGTGTGTCTTTGTATGCTATGT-----CTAA 2028
Query 2229 GCATTTTTACTTTGAAAA 2246
||||||||| ||||||||
Sbjct 2029 GCATTTTTATTTTGAAAA 2046
> Ahg888029 jgi|Araly1|888029|Al_scaffold_0007_15
Length=1455
Score = 1050 bits (568), Expect = 0.0
Identities = 1123/1389 (81%), Gaps = 45/1389 (3%)
Strand=Plus/Plus
Query 466 CAAGCTTACTATGTTCTTGGTCATAAGACACCAAACATTCGTGATATCTATAC-CCTT-A 523
||||| | ||||||||||||||| ||||| |||| || || || |||| ||| | ||
Sbjct 22 CAAGCCTGCTATGTTCTTGGTCAAAAGACCCCAAGCA-TC-CGAGATCTCTACTCGTTGG 79
Query 524 GCCGCAAGCTAGGTCAAGGTCAATTTGGAACGACTTATCTATGT--ACAGAGAT-TGCCT 580
| | || ||||||||||| || ||||| |||||||| | |||| | |||||| | |
Sbjct 80 GACAAAAACTAGGTCAAGGACAGTTTGGGACGACTTA-C-ATGTGCAGAGAGATCT-CAA 136
Query 581 CA-GGCGTTGACTACGCTTGTAAGTCAATATCCAAGA-GGAAGTTGATCTCTAAA-GAAG 637
|| |||| ||| ||||| || || || ||| ||| | | |||||||| || ||| ||||
Sbjct 137 CAGGGCG-TGAATACGCGTGCAAATCTATA-ACAAAACGAAAGTTGATATC-AAAGGAAG 193
Query 638 ATGTTGAGGATGTTAGAAGGGAGATTCAGATAATGCATCATTTAGCTGGTCAC-GGTAGT 696
|||| || || || | ||||| ||||| || ||||| ||| | |||||| || | |
Sbjct 194 ATGTGGAAGACGTGCGCAGGGAAATTCAAATCATGCACCATCTGGCTGGTTACAAG-AAC 252
Query 697 ATCGTGACGATTAAAGGAGCTTATGAGGACT-CTTTGTATGTTCACATTGTTATGGAGCT 755
|| || || |||||||| ||||| ||||| | | |||||||||||||| || ||||||||
Sbjct 253 ATTGTCACCATTAAAGGTGCTTACGAGGA-TCCATTGTATGTTCACATCGTGATGGAGCT 311
Query 756 TTG-TGCTGGAGGTGAATTGTTTGATAGGATTATTCAGAGAGGACATTATAGTGAGAGGA 814
||| | | || || ||| ||||||| || ||||| |||||||||||||| |||||||| |
Sbjct 312 TTGCT-CAGGTGGGGAACTGTTTGACAGAATTATCCAGAGAGGACATTACAGTGAGAGAA 370
Query 815 AAGCTGCTGAGCTGACT-AAGATCATTGTCGGTGTTGTTGAAGCGTGTCATTCGCTTGGT 873
|||| |||||||||| | ||||||||||| ||||||||||| || || ||||||||||||
Sbjct 371 AAGCAGCTGAGCTGA-TAAAGATCATTGTTGGTGTTGTTGAGGCTTGCCATTCGCTTGGT 429
Query 874 GTGATGCATAGAGACT-TGAAGCCTGAGAATTTCTTATTGGTTAATAAGGATGATGATTT 932
|| ||||||||||| | | ||||| || |||||||| |||||||| ||||| ||||| ||
Sbjct 430 GTCATGCATAGAGA-TCTAAAGCCCGAAAATTTCTTGTTGGTTAACAAGGACGATGACTT 488
Query 933 CTCTCTCAAGGCTATTGATTTTGGGCTATCTGTCTTTTTCAAACCAGGTCAAATATTC-A 991
||||||||| || |||||||||||||| || || || ||||||||||||||||||||| |
Sbjct 489 CTCTCTCAAAGCCATTGATTTTGGGCTTTCCGTGTTCTTCAAACCAGGTCAAATATTCGA 548
Query 992 CTGATGTTGTTGGAAGTCCATATTATGTTGCTCCTGAGGTTTTGCTCAAACGTTATGGGC 1051
||||| ||||||||||| ||||||||||||||||||||| ||||||| | || || |
Sbjct 549 -GGATGTGGTTGGAAGTCCGTATTATGTTGCTCCTGAGGTTCTGCTCAAGCACTACGGAC 607
Query 1052 CTGAAGCTGATGTGTGGACTGCTGGTGTTATATTGTATATATTGCTAAGCGGAGTCCCAC 1111
| || |||||||||||||| || || || ||| |||| |||||| | ||||||||||| |
Sbjct 608 CAGAGGCTGATGTGTGGACAGCAGGGGTCATACTGTACATATTGGTGAGCGGAGTCCCTC 667
Query 1112 CTTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCTGTGTTGAAAGGATATATCGACT 1171
| ||||||||||||||||||||||||||||||||||| ||| |||| || |||| ||||
Sbjct 668 CGTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCCGTGCTGAAGGGGCATATTGACT 727
Query 1172 TTGAGTCAGACCCGTGGCCTGTGATATCCGACAGTGCTAAAGACTTGATCCGCAGAATGT 1231
|||| || ||||| ||||| | ||||| ||| ||| |||||||||||||| | |||
Sbjct 728 TTGACTCCGACCCTTGGCCCCTAATATCTGACTCTGCAAAAGACTTGATCCGTGGCATGC 787
Query 1232 TATCCTCCAAGCC-TGCAGAACGTTTGACCGCTCATGAAGTCTTGCGTCATCCATGGATC 1290
||| ||| ||| | | || || |||| |||||| |||| ||||| ||||| ||||||
Sbjct 788 TATGTTCCCGGCCCT-CTGAGCGACTGACAGCTCATCAAGTATTGCGCCATCCTTGGATC 846
Query 1291 TGTGAGAATGGTGTTGCACCAGATAGAGCACTAGATCCAGCTGTTCTTTCTCGTCTCAAG 1350
||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 847 TGTGAAAATGGAGTTGCGCCAGACAGAGCACTAGATCCTGCTGTGCTTTCTCGTCTTAAG 906
Query 1351 CAATTCTCTGCAATGAATAAACTAAAGAAGATGGCTTTGAAGGTTA-TAGCTGAGAGTCT 1409
|| |||||||| ||||||||||||||| |||||||||| |||| || |||||||||||||
Sbjct 907 CAGTTCTCTGCGATGAATAAACTAAAGCAGATGGCTTT-AAGGGTAATAGCTGAGAGTCT 965
Query 1410 CTCGGAAGAAGAGATAGCTGGTTT-AAGAGAAATGTTTCAA-GCAATGGATACTGATAAC 1467
|||||| ||||| || ||||| | ||| |||||||| ||| |||||||| || ||||||
Sbjct 966 CTCGGAGGAAGAAATTGCTGGACTGAAG-GAAATGTT-CAAAGCAATGGACACGGATAAC 1023
Query 1468 AGCGGGGCAATCACATTTGATGAACTCAAAGCTGGGCTGAGAAAATATGGATCTACCTTG 1527
|| || || || |||||||| || || ||||||||| || ||| |||||| |||||| ||
Sbjct 1024 AGTGGAGCGATTACATTTGACGAGCTAAAAGCTGGGTTGCGAAGATATGGTTCTACCCTG 1083
Query 1528 AAAGACACAGAGATCCATGATCTTATGGATGCGGCTGATGTAGACAACAGTGGGACAATA 1587
|| || || ||||| | ||| |||||||| || || ||| | ||||| |||||||| |||
Sbjct 1084 AAGGATACTGAGATTCGTGACCTTATGGAGGCTGCAGATATTGACAAGAGTGGGACCATA 1143
Query 1588 GATTACAGTGAGTTCATTGCAGCGACGATCCATCTCAACAAACTAGAGCGGGAAGAGCAT 1647
||||| |||| |||||||| || || |||||||| |||||| ||||||| || || |||
Sbjct 1144 GATTATGGTGAATTCATTGCTGCAACAATCCATCTGAACAAATTAGAGCGTGAGGAACAT 1203
Query 1648 CTTGT-TGCAGCGTTTCAA-TATTTTGACAAAGATGGAAGCGGTTTCATAACAATTGATG 1705
||| | | |||| || || || |||||||||||||| ||||||| ||| || || || |
Sbjct 1204 CTTCTGT-CAGCCTT-CAGGTACTTTGACAAAGATGGCAGCGGTTACATCACTATCGACG 1261
Query 1706 AGCTACAACAAGCGTGTGTTGAACATGGCATG-GCTGATGT-TTTCCTTGAAGACATCAT 1763
||||||| || || |||| |||||| || || | |||||| |||| | ||||| | ||
Sbjct 1262 AGCTACAGCACGCATGTGCTGAACAGGGAATAAG-TGATGTCTTTC-TAGAAGATGTGAT 1319
Query 1764 CAAAGAAGTTGATCAAAACAATGATGGAAAGATTGATTATGGTGAGTTTGTGGAGATGAT 1823
||| ||||| || ||| |||||||||||| |||||| || || |||||||| | |||||
Sbjct 1320 CAAGGAAGTCGACCAAGACAATGATGGAAGGATTGACTACGGAGAGTTTGTAGCTATGAT 1379
Query 1824 GCA-AAAGG 1831
||| |||||
Sbjct 1380 GCAGAAAGG 1388
> Ahg929969 jgi|Araly1|929969|scaffold_302426.1
Length=1673
Score = 219 bits (118), Expect = 1e-55
Identities = 539/734 (73%), Gaps = 62/734 (8%)
Strand=Plus/Plus
Query 530 AGCTAGGTCAAGGTCAATTTGGAACGACTTATCTATGTACAGAG-ATTGCCTCAGGCGTT 588
||||||||| || |||||||| || ||||| || |||||| ||| | | || |
Sbjct 308 AGCTAGGTCGTGGGCAATTTGGGGTAACGTATCTGTGCACAGAGAATT-CGAC-GGGGAA 365
Query 589 G-ACTACGCTTGTAAGTCAATATCCAAGAGGAAGTTGATCTCTAAAGAAGATGTTGAGGA 647
| | |||||||| || || || || |||| |||| || | | |||| ||| || ||
Sbjct 366 GAAGTACGCTTGCAAATCGATCTCAAAGAAGAAGCTGGTGACGAAAGCTGATAAGGATGA 425
Query 648 TGTTAGAAGGGAGATTCAGATAATGCATCATTT-AGCTGGTCACG-GTAGTATCGT-GAC 704
| | || || ||||||||||||||||| ||||| || ||| || | || ||| || ||
Sbjct 426 TATGAGGAGAGAGATTCAGATAATGCAGCATTTGAG-TGGGCA-GCCTAATATAGTGGA- 482
Query 705 GATTAAAGGAGCTTATGAGGACTCTTTG-TA--TGTTCACATT-GTTATGGAGCTTTGTG 760
| ||||||||||||||||||| | | | ||| || || || |||||||||||||
Sbjct 483 GTTTAAAGGAGCTTATGAGGA---TGAGAAAGCTGTGAAC-TTGGTGATGGAGCTTTGTG 538
Query 761 CTGGAGGTGAATTGTTTGATAGGATTATT-C-AGAGAGGACATTATAGTGAGAGGAAAGC 818
|||| ||||||||||||||||| || ||| | | || |||||||| ||||||||| |||
Sbjct 539 CTGGTGGTGAATTGTTTGATAGAATCATTGCTA-AG-GGACATTACAGTGAGAGGGCAGC 596
Query 819 TGCTGAGCTGACT-AAGATC--ATTGTCG-GTGTTGTTGAAG-CGTGTCA-TTCGCTTGG 872
|||| ||| | ||| | ||||| | || || | ||| ||||| ||| | ||
Sbjct 597 TGCT--TCTGTTTGTAGA-CAGATTGT-GAATG-TGGTCAAGATTTGTCATTTC-ATGGG 650
Query 873 TGTGATGCATAGAGACTTGAAGCCTGAGAATTTCTTA-TTGGTTAATAAGGATGATGATT 931
|||| ||||||||||||||||||||||||||||||| || | | || ||||| ||
Sbjct 651 TGTGTTGCATAGAGACTTGAAGCCTGAGAATTTCTTGCTTTCT-AGCAAAGATGA-GAAG 708
Query 932 TCTCTC-TCAAGGCTATTGATTTTGGGCTA-TCTGTCTTT-TTCAAACCAGGTCAAA-TA 987
|| | ||||||||| |||||| || || |||||||| || || ||| ||| ||
Sbjct 709 GCTTTGATCAAGGCTACTGATTTCGG-CTTGTCTGTCTTCATTGAAG--AGGGAAAAGTA 765
Query 988 T-TCACTGATGTTGTTGGAAGTCCATATTATGTTGCTCCTGAGGTTTTGC-TCAAACGTT 1045
| | | ||| ||||||| ||| |||| ||||||||||| || || || | || | | |
Sbjct 766 TAT-AGAGATATTGTTGGGAGTGCATACTATGTTGCTCCAGAAGTCTTACGTCGCA-GAT 823
Query 1046 ATGGGCCTGAAGCTGATGTGTGGACTGCTGGTGTTATATTGTATATAT-TGCTAAGCGGA 1104
||||| |||| |||| | |||| |||||| | || || || || | | || |||||
Sbjct 824 ATGGGAAAGAAGTTGATATCTGGAGTGCTGGAATCATCTTATACAT-TCTACTCAGCGGT 882
Query 1105 GT-CCCACC-TTTCTGGGCAGAAACAC-AGCAAGGGATATTTGATGCTGTGTTGAAAGGA 1161
|| ||| || ||| ||||| ||||| | || |||| |||||||||||| | ||| ||||
Sbjct 883 GTGCCC-CCGTTT-TGGGCTGAAAC-CGAGAAAGGAATATTTGATGCTATATTGGAAGGC 939
Query 1162 TATATCGACTTTGAGT-C-AGACCCGTGGCCTGTGA-TATCCGACAGTGCTAAAGACTTG 1218
|||||||||||||| | | ||| ||||| || | | ||| ||||||| ||||| |||
Sbjct 940 CATATCGACTTTGAGAGCCA-ACCA-TGGCC-GTCAATCTCCAACAGTGCCAAAGATTTG 996
Query 1219 ATCCGCAGAATGTT 1232
| || ||||||||
Sbjct 997 GTACGTAGAATGTT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85207878065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5