BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35320.1
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491115 jgi|Araly1|491115|fgenesh2_kg.7__548__AT4G35320.1 924 0.0
> Ahg491115 jgi|Araly1|491115|fgenesh2_kg.7__548__AT4G35320.1
Length=771
Score = 924 bits (500), Expect = 0.0
Identities = 715/808 (88%), Gaps = 58/808 (7%)
Strand=Plus/Plus
Query 1 ACTAATCAATCTCTCACATTCACATTCATCTTCTTCTTCAATCTCTCTCAACAC--A-AA 57
|||||||||||||||||||| || || || |||||||||| ||||||| |||| | ||
Sbjct 1 ACTAATCAATCTCTCACATT--CA-TCTTCATCTTCTTCAACCTCTCTCCACACGAAGAA 57
Query 58 GAA-GAACAA-AGAAGTTATGAGCTCAATGATGGAGACTCTCCAGATTCGTAAACCCACT 115
||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAACAAACAACAAAAGCAATGAGCTCAATGATGGAGACTCTCCAGATTCGTAAACCCACT 117
Query 116 TCCCTCCCCGTTTCTCAACGCCCTAATGCAGCAGCCACCGCCGACGATGAGCCTGGTCTC 175
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 118 TCTCTCCCCGTTTCTCAACGTCCTAATGCAGCAGCCACCGCCGACGATGAGCCAGGTCTC 177
Query 176 ATCCGCCGTCGTCTCTCTTCTCTATCACTCAACCTCTCAAACCAACCAGCAGCGATCGCA 235
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 178 ATCCGCCGTCGTCTCTCTTCTCTCTCACTCAACCTCTCAAACCAACCAGCAGCGATCGCA 237
Query 236 GCTAGATTCCCGAGATCCAAATCTGTTTCCGCCATGGGAGAACAAGCAGGAAGCTCTGTG 295
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GCTCGATTCCCGAGATCCAAATCTGTTTCCGCCATGGGAGAACAAGCAGGAAGCTCTGTG 297
Query 296 AAAGAATGGTGGGAATGGGGTTGGTCATGGATCCTTTCAAGAAAACCTATATTCATCAGA 355
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 298 AAAGAATGGTGGGAATGGGGTTGGTCATGGATTCTTTCAAGAAAACCGATTTTCATCAGA 357
Query 356 GATCTTGAGCTTAACAAAGACGAAGCTAAATCGATTGGTTCACAAAACAGAGGAAGTATA 415
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 358 GATCTTGAGCTTAACAAAGACGAAGCTAAATCAATTGGTTCACAAAACAGAGGAAGTATA 417
Query 416 ATGCACGTTTTCTTCAAACTCCGATCTCAGATCCGTAATTTCATGGGACCTTCTTCAGAA 475
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 418 ATGCACGTTTTCTTCAAACTCCGATCTCAGATCCGTAATCTCATGGGACCTTCTTCATCA 477
Query 476 GATTCTCTTCCTCTTTCTTGCAAATACAAGCGTCAACGATAAAATGATTCATA-T----- 529
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 478 GATTCTCTTCCTCTTTCTTGCAAATACAAGCGTCAACGATAAAATGATTCTTGCTTCTTG 537
Query 530 ----A-A-GG--TTGAGATTTTGTGATTTGTCTGTTCttttttt-ACTTTTGTGCAATGG 580
| | || ||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 538 CTTCACATGGGGTTGAGATTTTGTGATTTGTCTCTTCTTTTTTTTACTTTCGTGCAATGG 597
Query 581 AGTATAATGAATGTATAATTCGTCtttttttttttAAACTTGATGTTGtattttgc-tat 639
||||||||| || || || || |||| | | || || | |||| || ||
Sbjct 598 AGTATAATGCTTG-ATG-TT-GTATTTTGCTAT--AA--TT-A------ATTT-GCCTAG 642
Query 640 aattaatttgcctagattattattaatcaatttatttattttatttGTGGTTACGAGTTT 699
| ||| || | || | ||| | | ||||||| | ||||||||||||||||||
Sbjct 643 A-TTA-TT-----A-ATCA--ATT--T-A-TTTATTT-T---ATTTGTGGTTACGAGTTT 684
Query 700 GTGGCTGTGCAGTTGTATTTTTGTATTTTAATAACCATGCAAATTATATAGAAAAATCCG 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 685 GTGGCTGTGCAGTTGTATTTTTGTATTTTAATAACCATGCAAATTATATAGAAAA-TCCG 743
Query 760 TTATTTTCGTTTTAATCTTTTACGCGCC 787
|||| | |||||||||||||||||||||
Sbjct 744 TTATATACGTTTTAATCTTTTACGCGCC 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29049662754
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5