BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35335.1 Length=1281 Score E Sequences producing significant alignments: (Bits) Value Ahg328213 jgi|Araly1|328213|fgenesh1_pm.C_scaffold_7000440 1746 0.0 Ahg947541 jgi|Araly1|947541|scaffold_703770.1 82.4 8e-15 > Ahg328213 jgi|Araly1|328213|fgenesh1_pm.C_scaffold_7000440 Length=1059 Score = 1746 bits (945), Expect = 0.0 Identities = 1022/1060 (96%), Gaps = 2/1060 (0%) Strand=Plus/Plus Query 22 ATGGAGTACCGGAAAATCAAAGATGAGGACGATCATGACGTTGCTTCTGATATCGAGAGT 81 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAGTACCGGAAAATCAAAGACGAGGACGATCATGACGTCGCTTCTGATATCGAGAGT 60 Query 82 GTGAAAGGAAAATCTCATACCGTTGCTTCGAGTAACATTGCAATGGCTACTCTGGGTGTT 141 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 GTGAAAGGAAAATCTCATACCGTTGCTTCGAGTAACATTGCGATGGCTACTCTGGGTGTT 120 Query 142 GGATCCAGTGAACGGATCAACTGGAAACGAAAGGGTGTAGTAACATGTGCACTGACGATT 201 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 121 GGATCCAGTGAACGGATCAACTGGAAACGAAAGGGTGTAGTGACATGTGCACTAACGATT 180 Query 202 CTGACGAGTTCTCAAGCGATACTTATCGTGTGGTCGAAACGAGCTGGGAAGTATGAGTAT 261 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 181 CTGACGAGTTCTCAAGCGATACTCATCGTGTGGTCGAAGCGAGCTGGGAAGTATGAGTAT 240 Query 262 AGTGTTACAACCGCCAACTTTTTGGTTGGA-ACTCTGAAATGTGCGTTATCTCTTCTTGC 320 ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 241 AGTGTTACAACCGCCAACTTTTTGGTT-GAGACTCTGAAATGTGCTTTATCTCTTCTTGC 299 Query 321 TTTGACAAGGATATGGAAAAATGAAGGTGTTACTGACGACAACAGGTTAAGCACAACATT 380 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 300 ATTGACAAGGATTTGGAAAAACGAAGGTGTTACTGACGACAACAGGTTAAGCACAACATA 359 Query 381 TGATGAAGTTAAAGTCTTTCCAATTCCCGCAGCATTGTATCTTTTTAAGAATTTGTTACA 440 ||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| Sbjct 360 TGATGAAGTTAAAGTCTTTCCTATTCCTGCAGCGTTGTATCTTTTCAAGAATTTGTTACA 419 Query 441 GTATTATATTTTTGCATATGTAGACGCCCCAGGCTATCAGATATTGAAGAACTTGAACAT 500 ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTACTATATTTTTGCTTACGTAGACGCCCCAGGCTATCAGATATTGAAGAACTTGAACAT 479 Query 501 CATAAGTACCGGTGTCTTGTACAGAATTATACTGAAGAGAAAATTGAGCGAGATTCAGTG 560 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 480 CATAAGTACCGGTGTCTTGTACAGAATTATACTGAAGAAAAAATTGAGCGAGATTCAGTG 539 Query 561 GGCGGGTTTCATTCTATTGTGTTGCGGATGCACCACTGCTCAGTTGAATTCAAATTCTGA 620 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 540 GGCGGGTTTCATTCTATTGTGTTGCGGATGCACCACTGCTCAGCTGAATTCAAATTCTGA 599 Query 621 TCGTGTTCTTCAGACATCTCTTCCTGGCTGGACTATGGCAATTGTCATGGCTCTTTTAAG 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TCGTGTTCTTCAGACATCTCTTCCTGGCTGGACTATGGCAATTGTCATGGCTCTTTTAAG 659 Query 681 TGGTTTCGCCGGAGTGTACACAGAGGCCATTATTAAAAAGCGACCTTCAAGGAATATAAA 740 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 660 TGGTTTCGCCGGAGTGTACACAGAGGCCATTATAAAAAAGCGACCTTCAAGGAATATAAA 719 Query 741 TGTACAGAACTTCTGGCTATATGTCTTTGGGATGGCTTTCAATGCTGTTGCTATAGTGAT 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGTACAGAACTTCTGGCTATATGTCTTTGGGATGGCTTTCAATGCTGTTGCTATAGTGAT 779 Query 801 CCAAGATTTTGATGCCGTTGCAAATAAGGGATTCTTCCATGGTTACTCCTTCATCACATT 860 ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | Sbjct 780 CCAAGATTTCGATGCCGTTGCAAACAAGGGATTTTTCCATGGTTACTCCTTCATCACAGT 839 Query 861 ACTCATGATTCTTAACCATGCTCTCAGTGGCATTGCTGTGTCGATGGTGATGAAATATGC 920 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 840 ACTCATGATTCTTAACCATGCACTCAGTGGCATTGCAGTGTCGATGGTGATGAAATATGC 899 Query 921 AGACAATATCGTGAAGGTTTATTCGACATCAGTGGCGATGCTTCTCACCGCAGTTGTCTC 980 ||||||||| || |||||||||||||||||||| || |||||||||||||| |||||||| Sbjct 900 AGACAATATTGTAAAGGTTTATTCGACATCAGTAGCAATGCTTCTCACCGCGGTTGTCTC 959 Query 981 TGTATTCCTCTTCAATTTTCATCTTTCCTTAGCCTTCTTCTTGGGTTCAACGGTCGTCTC 1040 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 960 TGTATTCCTCTTCAATTTTCATCTTTCCCTAGCCTTCTTCTTGGGTTCAACGGTCGTCTC 1019 Query 1041 TGTTTCAGTATATTTACATTCCGCAGGGAAGCTACGATAG 1080 ||||||||||||||| ||||| |||||||||||||||||| Sbjct 1020 TGTTTCAGTATATTTGCATTCTGCAGGGAAGCTACGATAG 1059 > Ahg947541 jgi|Araly1|947541|scaffold_703770.1 Length=1065 Score = 82.4 bits (44), Expect = 8e-15 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 898 GTGTCGATGG-TGATGAAATATGCAGACAATATCGTGAAGGTTTATTCGACATCAGTGGC 956 |||||| ||| | ||||| ||||||||||||||||||||||||||||| |||||| |||| Sbjct 785 GTGTCG-TGGTTAATGAAGTATGCAGACAATATCGTGAAGGTTTATTCTACATCAATGGC 843 Query 957 GATGCT 962 ||||| Sbjct 844 AATGCT 849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47882383752 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5