BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35335.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328213 jgi|Araly1|328213|fgenesh1_pm.C_scaffold_7000440 1746 0.0
Ahg947541 jgi|Araly1|947541|scaffold_703770.1 82.4 8e-15
> Ahg328213 jgi|Araly1|328213|fgenesh1_pm.C_scaffold_7000440
Length=1059
Score = 1746 bits (945), Expect = 0.0
Identities = 1022/1060 (96%), Gaps = 2/1060 (0%)
Strand=Plus/Plus
Query 22 ATGGAGTACCGGAAAATCAAAGATGAGGACGATCATGACGTTGCTTCTGATATCGAGAGT 81
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGTACCGGAAAATCAAAGACGAGGACGATCATGACGTCGCTTCTGATATCGAGAGT 60
Query 82 GTGAAAGGAAAATCTCATACCGTTGCTTCGAGTAACATTGCAATGGCTACTCTGGGTGTT 141
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GTGAAAGGAAAATCTCATACCGTTGCTTCGAGTAACATTGCGATGGCTACTCTGGGTGTT 120
Query 142 GGATCCAGTGAACGGATCAACTGGAAACGAAAGGGTGTAGTAACATGTGCACTGACGATT 201
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 121 GGATCCAGTGAACGGATCAACTGGAAACGAAAGGGTGTAGTGACATGTGCACTAACGATT 180
Query 202 CTGACGAGTTCTCAAGCGATACTTATCGTGTGGTCGAAACGAGCTGGGAAGTATGAGTAT 261
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 181 CTGACGAGTTCTCAAGCGATACTCATCGTGTGGTCGAAGCGAGCTGGGAAGTATGAGTAT 240
Query 262 AGTGTTACAACCGCCAACTTTTTGGTTGGA-ACTCTGAAATGTGCGTTATCTCTTCTTGC 320
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 241 AGTGTTACAACCGCCAACTTTTTGGTT-GAGACTCTGAAATGTGCTTTATCTCTTCTTGC 299
Query 321 TTTGACAAGGATATGGAAAAATGAAGGTGTTACTGACGACAACAGGTTAAGCACAACATT 380
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTGACAAGGATTTGGAAAAACGAAGGTGTTACTGACGACAACAGGTTAAGCACAACATA 359
Query 381 TGATGAAGTTAAAGTCTTTCCAATTCCCGCAGCATTGTATCTTTTTAAGAATTTGTTACA 440
||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct 360 TGATGAAGTTAAAGTCTTTCCTATTCCTGCAGCGTTGTATCTTTTCAAGAATTTGTTACA 419
Query 441 GTATTATATTTTTGCATATGTAGACGCCCCAGGCTATCAGATATTGAAGAACTTGAACAT 500
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTACTATATTTTTGCTTACGTAGACGCCCCAGGCTATCAGATATTGAAGAACTTGAACAT 479
Query 501 CATAAGTACCGGTGTCTTGTACAGAATTATACTGAAGAGAAAATTGAGCGAGATTCAGTG 560
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 CATAAGTACCGGTGTCTTGTACAGAATTATACTGAAGAAAAAATTGAGCGAGATTCAGTG 539
Query 561 GGCGGGTTTCATTCTATTGTGTTGCGGATGCACCACTGCTCAGTTGAATTCAAATTCTGA 620
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 GGCGGGTTTCATTCTATTGTGTTGCGGATGCACCACTGCTCAGCTGAATTCAAATTCTGA 599
Query 621 TCGTGTTCTTCAGACATCTCTTCCTGGCTGGACTATGGCAATTGTCATGGCTCTTTTAAG 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCGTGTTCTTCAGACATCTCTTCCTGGCTGGACTATGGCAATTGTCATGGCTCTTTTAAG 659
Query 681 TGGTTTCGCCGGAGTGTACACAGAGGCCATTATTAAAAAGCGACCTTCAAGGAATATAAA 740
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TGGTTTCGCCGGAGTGTACACAGAGGCCATTATAAAAAAGCGACCTTCAAGGAATATAAA 719
Query 741 TGTACAGAACTTCTGGCTATATGTCTTTGGGATGGCTTTCAATGCTGTTGCTATAGTGAT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTACAGAACTTCTGGCTATATGTCTTTGGGATGGCTTTCAATGCTGTTGCTATAGTGAT 779
Query 801 CCAAGATTTTGATGCCGTTGCAAATAAGGGATTCTTCCATGGTTACTCCTTCATCACATT 860
||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 780 CCAAGATTTCGATGCCGTTGCAAACAAGGGATTTTTCCATGGTTACTCCTTCATCACAGT 839
Query 861 ACTCATGATTCTTAACCATGCTCTCAGTGGCATTGCTGTGTCGATGGTGATGAAATATGC 920
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 840 ACTCATGATTCTTAACCATGCACTCAGTGGCATTGCAGTGTCGATGGTGATGAAATATGC 899
Query 921 AGACAATATCGTGAAGGTTTATTCGACATCAGTGGCGATGCTTCTCACCGCAGTTGTCTC 980
||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 900 AGACAATATTGTAAAGGTTTATTCGACATCAGTAGCAATGCTTCTCACCGCGGTTGTCTC 959
Query 981 TGTATTCCTCTTCAATTTTCATCTTTCCTTAGCCTTCTTCTTGGGTTCAACGGTCGTCTC 1040
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 960 TGTATTCCTCTTCAATTTTCATCTTTCCCTAGCCTTCTTCTTGGGTTCAACGGTCGTCTC 1019
Query 1041 TGTTTCAGTATATTTACATTCCGCAGGGAAGCTACGATAG 1080
||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1020 TGTTTCAGTATATTTGCATTCTGCAGGGAAGCTACGATAG 1059
> Ahg947541 jgi|Araly1|947541|scaffold_703770.1
Length=1065
Score = 82.4 bits (44), Expect = 8e-15
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 898 GTGTCGATGG-TGATGAAATATGCAGACAATATCGTGAAGGTTTATTCGACATCAGTGGC 956
|||||| ||| | ||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 785 GTGTCG-TGGTTAATGAAGTATGCAGACAATATCGTGAAGGTTTATTCTACATCAATGGC 843
Query 957 GATGCT 962
|||||
Sbjct 844 AATGCT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5