BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35350.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491113 jgi|Araly1|491113|fgenesh2_kg.7__546__AT4G35350.1 1991 0.0
> Ahg491113 jgi|Araly1|491113|fgenesh2_kg.7__546__AT4G35350.1
Length=1244
Score = 1991 bits (1078), Expect = 0.0
Identities = 1192/1247 (96%), Gaps = 8/1247 (1%)
Strand=Plus/Plus
Query 1 ACCAtctcttcttcttcttcctcttctctcAGTGAACAAATTTGGCTATGGCTTTTTCTG 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1 ACCATCTCTTCTTCTTCTTCCTCTTCTCTCAGTGAACAGATTTAGCTATGGCTTTTTCTG 60
Query 61 CACCATCACTTTCCAAATTCTCTCTTTTGGTTGCCATTTCAGCATCAGCTCTCCTCTGTT 120
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CACCATCACTTACTAAATTCTCTCTTTTGGTCGCCATTTCAGCATCAGCTCTCCTCTGTT 120
Query 121 GTGCTTTTGCCCGTGATTTCTCCATTGTTGGATACACGCCGGAGCATTTGACAAACACTG 180
|||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 121 CTGCTCTTGCCCGTGATTTCTCCATTGTTGGATACACACCGGAGCAGTTGACCTCCACTG 180
Query 181 ACAAGCTTCTAGAGCTCTTCGAGTCATGGATGTCAGAACACAGCAAGGCTTACAAAAGCG 240
| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 181 AAAAGCTTCTAGAGCTCTTTGAGTCATGGATGTCAGAACACAGCAAGGTTTACAAAAGTG 240
Query 241 TGGAGGAGAAGGTGCACAGGTTTGAGGTTTTCAGAGAGAATCTGATGCATATAGACCAGA 300
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 241 TGGAGGAGAAGGTGCACAGGTTTGAGGTGTTCAGAGAGAACCTGATGCATATAGACCAGA 300
Query 301 GGAACAATGAGATCAACAGTTACTGGCTCGGTTTGAACGAGTTTGCGGATTTGACCCATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GGAACAATGAGATCAACAGTTACTGGCTCGGTTTGAACGAGTTTGCGGATTTGACTCATG 360
Query 361 AAGAGTTCAAAGGAAGATATCTAGGACTTGCAAAGCCACAATTCTCTAGAAAGAGACAGC 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGAGTTCAAGGGAAGATATCTAGGACTTGCAAAGCCACAATTCTCTAGAAAGAGACAGC 420
Query 421 CCTCAGCTAACTTCAGGTACAGAGATATCACGGACTTGCCTAAATCCGTAGACTGGAGAA 480
|||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 421 CCTCTGCTAACTTCAGGTACAGAGACATCACTGACTTGCCTAAATCCGTAGACTGGAGGA 480
Query 481 AGAAAGGCGCTGTGGCTCCTGTCAAGGACCAGGGTCAATGTGGTAGCTGTTGGGCATTTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAAAGGCGCTGTGGCTCCTGTCAAGGACCAGGGTCAATGTGGTAGCTGTTGGGCATTTT 540
Query 541 CAACAGTTGCAGCTGTCGAGGGGATCAACCAGATCACAACAGGGAATCTGAGTTCGCTTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAACAGTTGCAGCTGTCGAGGGGATCAACCAGATCACAACAGGGAATCTGAGTTCGCTTT 600
Query 601 CAGAGCAAGAACTCATAGACTGTGACACAACTTTCAACAGTGGCTGCAATGGAGGTCTCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGAGCAAGAACTCATAGACTGTGACACAACTTTCAACAGTGGCTGCAATGGAGGTCTCA 660
Query 661 TGGACTACGCATTCCAGTACATAATTTCGACCGGTGGTCTCCACAAAGAAGATGATTACC 720
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 661 TGGACTACGCATTCCAGTACATAATTTCAACAGGTGGTCTCCACAAAGAAGACGATTACC 720
Query 721 CTTATCTCATGGAGGAAGGAATTTGTCAAGAGCAGAAAGAGGATGTGGAACGTGTGACAA 780
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 721 CTTATCTCATGGAAGAAGGAATTTGTCAAGAGCAGAAGGAGGATGTGGAACGTGTGACGA 780
Query 781 TCAGCGGCTACGAAGATGTCCCTGAAAATGATGACGAAAGCCTGGTGAAGGCTTTAGCTC 840
|||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||
Sbjct 781 TCAGCGGCTACGAAGATGTCCCAGAAAACGATGACGAAAGCCTTGTAAAGGCTTTAGCTC 840
Query 841 ATCAGCCAGTCAGTGTGGCTATTGAGGCTTCAGGAAGAGACTTCCAGTTCTACAAAGGGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCAGCCAGTCAGTGTGGCTATTGAGGCTTCAGGAAGAGACTTCCAGTTCTACAAAGGGG 900
Query 901 GAGTGTTTAATGGTA-AATGTGGAACAGACCTAGACCACGGTGTGGCAGCGGTTGGATAT 959
||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||
Sbjct 901 GAGTGTTTAATGG-ACAATGTGGAACAGACCTAGACCACGGTGTAGCAGCGGTCGGATAC 959
Query 960 GGTTCATCAAAGGGATCTGACTATGTTATTGTCAAGAACTCATGGGGACCAAGATGGGGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGTTCATCAAAGGGATCTGACTATGTTATTGTCAAGAACTCATGGGGACCAAGATGGGGA 1019
Query 1020 GAGAAAGGGTTTATTAGGATGAAGAGAAACACTGGTAAACCAGAGGGACTCTGTGGAATC 1079
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1020 GAGAAAGGGTTTATTAGGATGAAGAGAAACACCGGTAAACCAGAGGGACTCTGTGGAATC 1079
Query 1080 AACAAGATGGCCTCATATCCTACCAAGACCAAGTGATAGATATACCTTTGTTCCTGCATC 1139
||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||
Sbjct 1080 AACAAGATGGCCTCATATCCTACCAAGACCAAGTGAT-GATCTACCTT-GTTGCTGCATC 1137
Query 1140 CTACCtttttttCTTT----CTTTCAATGCATTTCTATTGCACATTATATTGTATTGATG 1195
|||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 CTACCTTTTTTTTTTTTTTTCTTTCAATGCATTTCGATTGCACATTATATTGTATTGATG 1197
Query 1196 AATGTGAGATTTTAAAATAACATGGTAAGAGTTCTCTTACCATTTTT 1242
|||||||| |||| |||||||||||| ||||||| |||||| |||||
Sbjct 1198 AATGTGAGGTTTTCAAATAACATGGTGAGAGTTCACTTACCTTTTTT 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5