BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35370.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944354 jgi|Araly1|944354|scaffold_700583.1 1088 0.0
Ahg931764 jgi|Araly1|931764|scaffold_304221.1 429 2e-119
Ahg946293 jgi|Araly1|946293|scaffold_702522.1 355 4e-97
> Ahg944354 jgi|Araly1|944354|scaffold_700583.1
Length=1600
Score = 1088 bits (589), Expect = 0.0
Identities = 772/857 (90%), Gaps = 25/857 (3%)
Strand=Plus/Plus
Query 247 GAGATTGAACTGTTTAGCTCTGGGCAGGGACACCTTTATTATCCAAGCAATGACATGGAT 306
||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 339 GAGATTGAACTGTTTAGCTCTGGCCAGGGAGACCTTTATTATCCAAGCAATGAGATGGAT 398
Query 307 CCATACCTAAAGGATACTGACGGTGACTATGACTCAGAGGATCACGATGACTTGACAATT 366
|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||
Sbjct 399 CCATACCTAAAGGATACTGACGCTGACTATGACTCAGAGGATCTCGATGACATGATAATT 458
Query 367 AGGCCAACCGATTCACTGATCATCTGTGCT-GCTATTAAACATGAAGTCAACTATCTCGA 425
||||||||||||| |||||||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 459 AGGCCAACCGATTTACTGATCATCTGTGCTAG-TATTAAACGTGAAGTCAACTCTCTCGA 517
Query 426 GGTTTATGTATATGAGGAATCCGAAAACATTTATCTTCG-CAATGACATGATTATATCCG 484
|||||||||||| |||||||||| ||||| |||||||| | |||||||||||||||||
Sbjct 518 GGTTTATGTATACGAGGAATCCGGGAACATGTATCTTCGTC-ATGACATGATTATATCCA 576
Query 485 AGCTTCCATTGTGCACAGCATGGCTTGATTGTCCTCTCAAAGGAGGGGGAAAAGGGAACT 544
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 577 AGGTTCCATTGTGCACAGCATGGCTTGATTGTCCTCTCAAAGGAGGGGAAAAAGGGAACT 636
Query 545 TTGTAGCTATCGGGACAATGGAGTCCTCTATAGAGATATGGGATCTTGACCTTGT--ATG 602
|||||||||||||| ||||||| ||||| | |||||||||||||||||||||||| |||
Sbjct 637 TTGTAGCTATCGGGTCAATGGACTCCTCCAAAGAGATATGGGATCTTGACCTTGTGAATG 696
Query 603 TACTTGTGCTACCTTGTGTACAACT-GG--G---A--C-G---G--AT-A-ATTCCCACA 646
| |||||||||||||||||||| || | | | | | || | ||| |||||
Sbjct 697 -A--GGTGCTACCTTGTGTACAACTGGGACGAATAGCCGGACAGACATCAGATTGCCACA 753
Query 647 CTGGTCCAGTAATTGATCTTGCTTGGAACAAGGAGTTTCGGAATATAGTTGCTAGTGGTA 706
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 754 CTGATCCAGTAATTGATCTTGCTTGGAACAAGGAGTTTCGGAATATAGTTGCTAGTGCCA 813
Query 707 GTGAAGACAAAAAAGTGAAGGTTTGGGATGTGGCTACGGGGAAATGCAAGGTTACTATGG 766
||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 814 GTGCCGACAAAAAAGTTAAGGTTTGGGATGTCGCTACGGGGAAATGCAAGGTCACTATGG 873
Query 767 AGCATCACGAAAAGAAGGTTCACGCGGTTGCATGGAACAATTATACTCCAGAAGTACTCC 826
||||||||||| ||||||| | ||||||||||||||| ||||| |||||||||||||||
Sbjct 874 AGCATCACGAAGGGAAGGTTAAAGCGGTTGCATGGAACCATTATGCTCCAGAAGTACTCC 933
Query 827 TCAGTGGGTCTCGTGATCGTACTGTAGTATTGAAAGATGGAAGGGACCCTTCAAACTCGG 886
||||||||||| ||||| | ||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 934 TCAGTGGGTCTAGTGATGGCACTGTAGTAATGAAAGACGGAAGGGACCCTTCACACTCGG 993
Query 887 GTTTGAAATGGTCTACCGAGGCCAAAGTCGAAAAATTGGCTTGGGATCCTCACAGCGAAC 946
||||||||||||||||| |||| |||| ||| | ||||| |||||||||||||||||||
Sbjct 994 GTTTGAAATGGTCTACCAAGGCGGAAGTTGAAGACTTGGCCTGGGATCCTCACAGCGAAC 1053
Query 947 ACTCCTTTGTGGTGAGTCTCAAAGATGGAACTGTGAAGGGCTTTGATACACGTGCTTCTG 1006
|||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||
Sbjct 1054 ACTCCTTTGTGGCGAGTCTCGAAGATGGAACTGTGAAGGGATTTGATGTACGTGCTTCTG 1113
Query 1007 ATTTATCACCAAGTTTCATTATCCATGCTCATGATAGTGAAGTCTCCTCCATATCATACA 1066
|||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 1114 ATTTATCACCAAATTTCATTCTCCATGCTCATTATGGTGAAGTCTCCTCCATATCATACA 1173
Query 1067 ACATACATGCCCCCAAT 1083
||||||| |||||||||
Sbjct 1174 ACATACAGGCCCCCAAT 1190
Score = 159 bits (86), Expect = 4e-38
Identities = 150/177 (85%), Gaps = 20/177 (11%)
Strand=Plus/Plus
Query 78 GGAAGAAAAGATGGACGATGAAATTCAGAATGCTCAAGTTACTCATGCCAAGTCTGTAGC 137
||||||| ||||||||||||||| || | | |||| | |||||||||||||||||
Sbjct 139 GGAAGAAGAGATGGACGATGAAA--CA-CA-G----AGTTGCCCATGCCAAGTCTGTAGC 190
Query 138 AAAATCTTTT-GG-------G----AAAAGCAAGGTTGCTTCTTCTTCTTCAACAGATGC 185
|||||||||| || | |||||||||| ||||||||||||||||||||||||
Sbjct 191 AAAATCTTTTGGGAAACCATGTTCCAAAAGCAAGGGTGCTTCTTCTTCTTCAACAGATGC 250
Query 186 TGATGAAGTTGTCAAGTTCTTGAAAGAACTCGACATGGATAACTATGATGAAGAGGA 242
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 251 TGATGACGTTGTCAAGTTCTTGAAAGAACTCGACATGGATAACTATGACGAAGAGGA 307
Score = 147 bits (79), Expect = 3e-34
Identities = 90/95 (95%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 1084 CTTTTGGCTACGGGATCT-GCGGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAACCA 1142
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 1284 CTTTTGGCTACGGGATCTAG-GGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAATCA 1342
Query 1143 ACCATCATGGATTGCTACAAACAAGCCAAATGCTG 1177
||| ||||||||||||||||||| |||||||||||
Sbjct 1343 ACCTTCATGGATTGCTACAAACATGCCAAATGCTG 1377
> Ahg931764 jgi|Araly1|931764|scaffold_304221.1
Length=427
Score = 429 bits (232), Expect = 2e-119
Identities = 323/365 (88%), Gaps = 13/365 (4%)
Strand=Plus/Plus
Query 960 GAGTCTCAAAGATGGAACTGTGAAGGGCTTTGATACACGTGCTTCTGATTTATCACCAAG 1019
|||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 47 GAGTCTTAAAGATGGAACTGTGAAGAGCTTTGATATACGTGCTGCTGATTTATCACCAAG 106
Query 1020 TTTCATTATCCATGCTCATGATAGTGAAGTCTCCTCCATATCATACAACATACATGCCCC 1079
||| | | |||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 107 TTTTACTCTCCATGCTAATGATGGTGAAGTCTCCTCCATTTCATACAACATACATGCCCC 166
Query 1080 CAATCTTTTGGCTACGGGATCTGCGGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAA 1139
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CAATCTTTTGGCTATGGGATCTGCGGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAA 226
Query 1140 CCAACCATCATGGATTGCTACAAACAAGCCAAATGCTG---GAG-AA--GTTTTCTCGGT 1193
|||||||||||||||||||| || ||||||||||| ||| || |||||||||||
Sbjct 227 TCAACCATCATGGATTGCTACGCACTTGCCAAATGCTGTAAGAGGAATAGTTTTCTCGGT 286
Query 1194 CTCATTCTCAGCGGACTGCCCCTTCTTACTCGCTGTTGGTGGCTCAGAGGGGCTAAA-TG 1252
||||||||| ||||||||||| ||||||||||||| |||| ||||||||||| || |
Sbjct 287 CTCATTCTCCGCGGACTGCCCTTTCTTACTCGCTGCTGGTAGCTCAGAGGGG--AAGCTA 344
Query 1253 TAAGTGTGGGATAC-CTTATCAGACA-CTGCTGTGTCCCGAAGATATGGTAGCAGCCGAC 1310
||||||||||||| || || |||| | | |||||||||||||||||| |||| |||||
Sbjct 345 AAAGTGTGGGATACACTG-TCGGACAACGG-TGTGTCCCGAAGATATGGAAGCAACCGAC 402
Query 1311 CATGA 1315
| |||
Sbjct 403 CGTGA 407
> Ahg946293 jgi|Araly1|946293|scaffold_702522.1
Length=1440
Score = 355 bits (192), Expect = 4e-97
Identities = 531/687 (77%), Gaps = 54/687 (8%)
Strand=Plus/Plus
Query 653 CAGTAATTGATCTTGCTTGGAACAAGGAGTTTCGGAATATAGTTGCTAGTGGTAGTGAAG 712
|||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct 736 CAGTTATTGGTCTTGCTTGGAACAAGGAGTTTCGGAATATACTTGCTAGTGGCAGTGTCG 795
Query 713 ACAAAAAAGTGAAGGTTTGGGATGTGGCTACGGGGAA-ATGCAAGGTTACTATGGAGCAT 771
||||| |||| || ||||||||||| ||||| | || |||| || ||||| ||||||||
Sbjct 796 ACAAACAAGTTAAAGTTTGGGATGTTGCTACTGA-AACATGCCAGATTACTCTGGAGCAT 854
Query 772 CACGA-AAAGAAGGTTCACGCGGTTGCATGGAACAATTATACTCCAGAAGTACTCCTCAG 830
||| | |||| |||||| |||||||| |||||| ||||| |||| |||||||| || ||
Sbjct 855 CAC-ACAAAGGGGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCGGAAGTACTTCTTAG 913
Query 831 TGGGTC-TCGTGATCGTACTGTAGTATTGAAAGATGGAAGGGACCCTTCAAACTCGGGTT 889
|||||| | |||||| ||||| ||||||||||||| ||| | |||||| |||||||||
Sbjct 914 TGGGTCATT-TGATCGCACTGTTGTATTGAAAGATGTAAGAAAGCCTTCACACTCGGGTT 972
Query 890 TGAAATGGTCTAC-CGAGG-CCAAAGTCGAAAAATTGGCTTGGGATCCTCACAGCGAACA 947
| |||||||| | | | ||||||| |||| || || |||||||| || |||||| |
Sbjct 973 TCAAATGGTC-AGTC-ATTTCCAAAGTTGAAAGCTTAGCCTGGGATCCACATAGCGAATA 1030
Query 948 CTCCTTTGTGGTGAGTCTCAAAGATGGAACTGTGAAGGGCTTTGATACACGT---GCTTC 1004
||||||| |||| |||||||||||||||||||||||||| |||||| ||| || ||
Sbjct 1031 CTCCTTTTTGGTTAGTCTCAAAGATGGAACTGTGAAGGGTTTTGATGTTCGTCAAGCCTC 1090
Query 1005 ---TG-AT--T-T-AT-CA---CCAAGTTTCATTATCCATGC-TC-ATGATAGTGAAGTC 1050
| | | | || || |||||||||| | |||| | | | | || | ||||
Sbjct 1091 AACTTCAACCTCTGATTCAAATCCAAGTTTCACTCTCCAA-CATGGACG-TAAAGCAGTC 1148
Query 1051 TCCTCCATATCATACAACATA-CATGCCCCCAATCTTTTGGCTACGGGATCTGCGGATGA 1109
| ||||| ||||||||| | | ||| || ||||||||||| || |||||| ||||| |
Sbjct 1149 ACTTCCATCTCATACAACGTTTC-TGCACCTAATCTTTTGGCAACTGGATCTACGGATCA 1207
Query 1110 AA-GTGTGAAA-CTTTGGGATCTTTCAAACAACCAACCATCATGGATTGCTACAAACA-A 1166
| | || ||| |||||||||||||||||||| |||| ||||| ||||||||| || |
Sbjct 1208 ATCG-GT-AAAGCTTTGGGATCTTTCAAACAATGAACCTTCATGCATTGCTACACACCGA 1265
Query 1167 GCCAAATGCTGGA-GA--AGTTTTCTCGGT-CTCATTCTC-AGCGGACTGCCCCTTCTTA 1221
|||||||||||| | | ||||| | | | | ||||| | ||||| || ||||||
Sbjct 1266 -CCAAATGCTGGACGCTTA-TTTTC-CATTGC-C-TTCTCTA-CGGACAATCCTTTCTTA 1319
Query 1222 CTCGCTGTTGGTGGCTCAGAGGGGCTAAATGTAA--GTGTGGGATAC-CTTATCAGACAC 1278
|||||| | |||||| | | |||| || | ||| || ||||||| ||| || |||||
Sbjct 1320 CTCGCTATGGGTGGC-CTTATGGGC-AAGT-TAAAAGTTTGGGATATACTT-TCGGACAC 1375
Query 1279 TGCTGTGTCCCGAAGATATGGTAGCAG 1305
| ||| ||| | ||||| || |||||
Sbjct 1376 TAATGTCTCCAGCAGATACGGAAGCAG 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5