BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35390.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491108 jgi|Araly1|491108|fgenesh2_kg.7__541__AT4G35390.1 1997 0.0
> Ahg491108 jgi|Araly1|491108|fgenesh2_kg.7__541__AT4G35390.1
Length=1317
Score = 1997 bits (1081), Expect = 0.0
Identities = 1268/1351 (94%), Gaps = 42/1351 (3%)
Strand=Plus/Plus
Query 9 TTCACATGAAGATCTAGATCTGGGTCCAGACAAATTTCACCGACCCAGCTCTTTCACATA 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCACATGAAGATCTAGATCTGGGTCCAGACAAATTTCACCGACCCAGCTCTTTCACATA 60
Query 69 TGTAGACctctctctctctAATTATTCAGTAAGGTTTTGTTCTCTCTTGTCGTCTTCTTG 128
| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TTTAGACCTCTCTCTCTCTTATTA-TCAGTAAGGTTTTGTTCTCTCTTGTCGTCTTCTTG 119
Query 129 TTTTGTCCGTAGCATTATTAATAATCAAACTCAGTCTCTGAAATACTCTCAGTGACAAAC 188
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTTGTCCGTAGCATTA-T--TAATCAAACTCAGTCTCTGAAATACTCTCAGTGACAAAC 176
Query 189 CACTTCTGTCGACTTTTGTC-TTTGTCTCTCACTAGCTATAACCaaaaaaaTCCAAAAAC 247
|||||||||||||||||||| ||||||||| | | |||||||||||| |||||||||||
Sbjct 177 CACTTCTGTCGACTTTTGTCTTTTGTCTCT--C-A-CTATAACCAAAACAATCCAAAAAC 232
Query 248 CCAAACCACAGTTTCTTGTTTTTGTTATCAATGTCTAGTTATATGCACCCTCTTCTAGGG 307
|| | | | |||||||||| || |||||||||||||||||||||||
Sbjct 233 CC--A--A-A-------------GTTATCAATGGCTGGTTATATGCACCCTCTTCTAGGG 274
Query 308 CAAGAACTGCATCTACAGAGACCTGAAGATTCCAGAACCCCACCTGATCAAAATAACATG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CAAGAACTGCATCTACAGAGACCTGAAGATTCCAGAACCCCACCTGATCAAAATAACATG 334
Query 368 GAACTTAACAGATCTGAAGCAGACGAAGCAAAGGCCGAGACCACTCCCACCGGTGGAGCC 427
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 335 GAACTTAACAGATCTGAAGCAGACGAAGCCAAGGCCGAGACCACTCCCACCGGCGGAG-C 393
Query 428 A-CCAGCTCAGCCACAGCCTCTGGCTCTTCCTCCGGACGTCGTCCACGTGGTCGTCCTGC 486
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 394 AGCCAGCTCAGCCACAGCCTCTGGCTCTTCCTCCGGACGCCGTCCACGTGGTCGTCCTGC 453
Query 487 AGGTTCCAAAAACAAACCCAAACCTCCGACGATTATAACTAGAGATAGTCCTAACGTCCT 546
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 454 AGGTTCAAAAAATAAACCCAAACCTCCGACGATTATAACCAGAGATAGTCCTAACGTCCT 513
Query 547 TAGATCACACGTTCTTGAAGTCACCTCCGGTTCGGACATATCCGAGGCAGTCTCCACCTA 606
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 514 TAGATCCCACGTTCTTGAAGTCACCTCTGGTTCGGACATATCCGAGGCTGTCTCCACCTA 573
Query 607 CGCCACTCGTCGCGGCTGCGGCGTTTGCATTATAAGCGGCACGGGTGCGGTCACTAACGT 666
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 574 TGCCACTCGTCGCGGCTGCGGCGTTTGCATTATAAGCGGCACTGGTGCGGTAACTAACGT 633
Query 667 CACGATACGGCAACCTGCGGCTCCGGCTGGTGGAGGTGTGATTACCCTGCATGGTCGGTT 726
||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 634 CACAATACGGCAACCGGCGGCTCCGGCGGGTGGAGGTGTGATTACTCTGCATGGTCGGTT 693
Query 727 TGACATTTTGTCTTTGACCGGTACTGCGCTTCCACCGCCTGCACCACCGGGAGCAGGAGG 786
||| |||||||||||||| || ||||||||||| |||||||| |||||||||||||||||
Sbjct 694 TGAGATTTTGTCTTTGACTGGGACTGCGCTTCCGCCGCCTGCGCCACCGGGAGCAGGAGG 753
Query 787 TTTGACGGTGTATCTAGCCGGAGGTCAAGGACAAGTTGTAGGAGGGAATGTGGCTGGTTC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TTTGACGGTGTATCTAGCCGGAGGTCAAGGACAAGTTGTAGGAGGGAATGTGGCTGGTTC 813
Query 847 GTTAATTGCTTCGGGACCGGTAGTGTTGATGGCTGCTTCTTTTGCAAACGCAGTTTATGA 906
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 814 GTTAATTGCTTCGGGTCCGGTTGTGTTGATGGCTGCTTCTTTTGCAAACGCAGTTTATGA 873
Query 907 TAGGTTACCGATTGAAGAGGAAGAAACCCCACCGCCGAGAACCACCGGGGTGCAGCAGCA 966
||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 874 TAGATTACCGATTGAAGAGGAAGAAACTCCACCGCCGAGAGCCACCGGGGTGCAGCAGCA 933
Query 967 GCAGCCGGAGGCGTCTCAGTCGTCGGAGGTTACGGGGAGTGGGGCCCAGGCGTGTGAGTC 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 GCAGCCGGAGGCGTCTCAGTCGTCGGAGGTTACGGGGAGTGGGGCCCAGGCGTGTGAGTC 993
Query 1027 AAACCTCCAAGGTGGAAATGGTGGAGGAGGTGTTGCTTTCTACAATCTTGGAATGAATAT 1086
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 994 AAACCTCCAAGGTGGAAATGGTGGAGGAGGTGTTGCTTTCTACAATCTGGGAATGAATAT 1053
Query 1087 GAACAATTTTCAATTCTCCGGGGGAGATATTTACGGTATGAGCGGCGGTAGCGGAGGAGG 1146
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1054 GAACAATTTTCAATTCTCCGGGGGAGATATTTTCGGTATGAGCGGCGGTAGCGGAGGAGG 1113
Query 1147 TGGTGGCGGTGC-GACTAGACCCGCGTTTTAGAGT-TT-TAGCGTTTTGGTGACACCTTT 1203
|| ||||| | |||||||||||| |||||| || || |||||||||||||||||||||
Sbjct 1114 AGGCGGCGGC-CTGACTAGACCCGCATTTTAGCGTGTTATAGCGTTTTGGTGACACCTTT 1172
Query 1204 TGTTGCGTTTGCGTGTTTGACCTCAAACTACTAGGCTACTAGCTATAGCGGTTGCGAAAT 1263
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TGTTGCGTTTG--TGTTTGACCTCAAACTACTAGGCTACTAGCTATAGCGGTTGCGAAAT 1230
Query 1264 GCGAATATTAGG-ttttatttatttattttttG-TTTCTCTTAAAACTTGGTGTGTGAAA 1321
||||||| |||| |||| ||||||||| ||| | |||||| |||||||||||||||||||
Sbjct 1231 GCGAATACTAGGGTTTT-TTTATTTATATTT-GCTTTCTCGTAAAACTTGGTGTGTGAAA 1288
Query 1322 AAAGAAAACGAACGCTTAAA-TTTCCTTTTT 1351
|| ||||||||||||| ||| ||||||||||
Sbjct 1289 AA-GAAAACGAACGCT-AAAGTTTCCTTTTT 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5