BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35410.2
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480622 jgi|Araly1|480622|fgenesh2_kg.3__3323__AT2G17380.1 569 8e-162
Ahg888528 jgi|Araly1|888528|Al_scaffold_0007_514 276 2e-73
> Ahg480622 jgi|Araly1|480622|fgenesh2_kg.3__3323__AT2G17380.1
Length=674
Score = 569 bits (308), Expect = 8e-162
Identities = 424/481 (88%), Gaps = 4/481 (1%)
Strand=Plus/Plus
Query 92 ATGATACATTTTGTGCTTCTAGTTAGCCGGCAA-GGAAAGGTAAGGCTCACCAAATGGTA 150
||||||||||| ||||| |||||||| || ||| ||||| |||||||||||||| |||||
Sbjct 80 ATGATACATTTCGTGCTACTAGTTAGTCGACAAGGGAAA-GTAAGGCTCACCAAGTGGTA 138
Query 151 TTCTCCTTATGCACAGAAGGAAAGATCTAAGGTTATACGTGAACTCAGTGGAGTGATTCT 210
||| |||||| |||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 139 TTCGCCTTATACACAGAAGGAAAGATCTAAGGTCATACGCGAACTCAGCGGCGTGATTCT 198
Query 211 GAATCGAGGTCCAAAGCTCTGCAATTTTGTTGAATGGAGAGGATACAAAGTTGTTTACAA 270
||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 199 GAACCGAGGTCCCAAGCTCTGCAATTTTATTGAATGGAGAGGATACAAGGTTGTCTACAA 258
Query 271 AAGATATGCAAGTC-TCTACTTCTGCATGTGCATTGATCAGGAGGATAACGAGTTAGAGG 329
|||||||||||| | | || |||||||||||||||||| ||| |||||||||| ||||||
Sbjct 259 AAGATATGCAAG-CTTGTATTTCTGCATGTGCATTGATGAGGCGGATAACGAGCTAGAGG 317
Query 330 TCCTTGAGATCATTCATCACTATGTTGAGATTCTCGATCGCTATTTTGGAAGTGTGTGTG 389
| || ||||| ||||||||||| || ||||| || || || || ||||| ||||||||||
Sbjct 318 TACTGGAGATAATTCATCACTACGTCGAGATACTTGACCGTTACTTTGGCAGTGTGTGTG 377
Query 390 AACTCGATTTGATTTTTAACTTCCACAAGGCATATTACATATTGGATGAGCTCTTGATTG 449
||||||||||||||||||||||||||||||| ||||| ||| | |||||||| ||||| |
Sbjct 378 AACTCGATTTGATTTTTAACTTCCACAAGGCGTATTATATACTCGATGAGCTGTTGATCG 437
Query 450 CTGGGGAGCTTCAAGAGTCAAGCAAGAAAACAGTAGCCAGGATTATATCCGCTCAGGATC 509
|||| || ||||||||||| |||||||||||||| || ||||| ||||| || |||||||
Sbjct 438 CTGGTGAACTTCAAGAGTCGAGCAAGAAAACAGTTGCAAGGATAATATCAGCCCAGGATC 497
Query 510 AACTGGTGGAGGTTGCAAAAGAGGAGGCCAGTTCGATAAGTAATATAATCGCTCAGGCTA 569
|| ||||||| | ||| ||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 498 AATTGGTGGAAGCTGCGAAAGAGGAGGCGAGTTCCATAAGTAATATAATTGCTCAGGCTA 557
Query 570 C 570
|
Sbjct 558 C 558
> Ahg888528 jgi|Araly1|888528|Al_scaffold_0007_514
Length=429
Score = 276 bits (149), Expect = 2e-73
Identities = 230/266 (86%), Gaps = 18/266 (7%)
Strand=Plus/Plus
Query 114 TTAGCCGGCAAGGAAAGGTAAGGCTCACCAAATGGTATTCTCCTTATGCACAGAAGGAAA 173
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 41 TTAGCCGGCAAGGAAAGGTAAGGCTCACCAAATGGTATTCGCCTTACGCACAGAAGGAAA 100
Query 174 GATCTAAGGTTATA-C-GTGA----AC-T-C-A-GTGGA-GTGATTC-TGAA-TCGAGGT 220
|||||||| || | | | | || | | | || | || || | |||| || | ||
Sbjct 101 GATCTAAGCATACATCTCTCATTTTACATGCTATGTATAGGTTATACGTGAACTC-A-GT 158
Query 221 CCA--AAGCTCTGCAATTTTGTTGAATGGAGAGGATACAAAGTTGTTTACAAAAGATATG 278
| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 159 GGAGTTA-TTCTGCAATTTTGTTGAATGGAGAGGCTACAAAGTTGTTTACAAAAGATATG 217
Query 279 CAAGTCTCTACTTCTGCATGTGCATTGATCAGGAGGATAACGAGTTAGAGGTCCTTGAGA 338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 218 CAAGTCTCTACTTCTGCATGTGCATTGATCAGGAGGATAACGAGTTAGAGGTCCTTGACA 277
Query 339 TCATTCATCACTATGTTGAGATTCTC 364
||||||||||||||| ||||||||||
Sbjct 278 TCATTCATCACTATGCTGAGATTCTC 303
Score = 202 bits (109), Expect = 3e-51
Identities = 117/121 (97%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 453 GGGAGCTTCAAGAGTCAAGCAAGAAAACAGTAGCCAGGATTATATCCGCTCAGGATCAAC 512
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 305 GGGAGCTTCAAGAGTCAAGCAAGAAAACAGTTGCCAGGATTATATCCGCTCAGGATCAAC 364
Query 513 TGGTGGAGGTTGCAAAAGAGGAGGCCAGTTCGATAAGTAATATAATCGCTCAGGCTACTA 572
||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 365 TGGTGGAGGTTGCAAAAGAGGAGACCACTTCGATAAGTAACATAATCGCTCAGGCTACTA 424
Query 573 A 573
|
Sbjct 425 A 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5