BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35420.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491107 jgi|Araly1|491107|fgenesh2_kg.7__540__AT4G35420.1 1705 0.0
> Ahg491107 jgi|Araly1|491107|fgenesh2_kg.7__540__AT4G35420.1
Length=1120
Score = 1705 bits (923), Expect = 0.0
Identities = 1027/1079 (95%), Gaps = 0/1079 (0%)
Strand=Plus/Plus
Query 1 ACCGGAAAATGGATCAAGCAAAGGGAAAAGTCTGTGTTACTGGTGCTTCAGGCTTCTTGG 60
||| |||||||||||||| ||||| ||||||||||||||| || ||||||||||||||||
Sbjct 1 ACCAGAAAATGGATCAAGGAAAGGCAAAAGTCTGTGTTACCGGGGCTTCAGGCTTCTTGG 60
Query 61 CTTCTTGGCTTGTAAAGAGGCTTCTACTTGAAGGATATGAAGTTATCGGAACAGTCAGAG 120
||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 61 CTTCTTGGCTTGTGAAGAGGCTTCTGCTTGAGGGATATGAAGTTATTGGAACAGTCAGAG 120
Query 121 ATCCAGGAAATGAGAAGAAACTTGCGCACCTATGGAAGTTGGAAGGGGCAAAGGAGAGAC 180
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 121 ATCCAGGAAATGAGAAGAAACTCGCACACCTATGGAAGTTGGAAGGGGCAAAGGAGAGAC 180
Query 181 TACGGTTGGTGAAGGCTGATTTAATGGAAGAAGGAAGTTTTGATAACGCCATAATGGGAT 240
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TGCGGCTGGTGAAGGCTGATTTAATGGAAGAAGGAAGTTTTGATAACGCCATTATGGGAT 240
Query 241 GCCAAGGAGTGTTCCATACTGCTTCTCCGGTGCTTAAACCTACCTCTAATCCAGAGGAGG 300
|||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 241 GCCAAGGAGTTTTCCATACTGCTTCTCCTGTGCTCAAACCTACCTCTAATCCCGAGGAGG 300
Query 301 AGATTCTGAGACCAGCTATAGAAGGAACCCTGAATGTACTGCGATCATGCAGGAAGAATC 360
||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 301 AGATTTTGAGACCAGCTATAGAGGGAACCCTGAATGTACTGCGATCATGCGGGAAGAATC 360
Query 361 CTTCCCTGAAGCGCGTGGTTCTCACCTCATCCTCTTCAACAGTCAGGATCAGAGATGATT 420
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 CGTCCCTGAAGCGCGTGGTTCTCACCTCATCATCTTCAACAGTCAGGATCAGAGATGATT 420
Query 421 TTGATCCCAAAATCCCTCTTGACGAATCAATTTGGACGTCTGTGGAACTCTGCAAGCGCT 480
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 421 TTGATCCCAAAATCCCTCTTGACGAATCAATTTGGACCTCTGTGGAACTCTGCAAGCGTT 480
Query 481 TCCAGGTCTGGTATGCCTTATCAAAGACATTAGCGGAACAAGCTGCATGGAAATTCTCTG 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 481 TCCAGGTCTGGTATGCCTTATCAAAGACATTAGCGGAGCAAGCTGCATGGAAATTCTGTG 540
Query 541 AAGAAAATGGTATTGACCTCGTCACTGTTCTACCATCCTTCCTCGTTGGACCCAGTCTGC 600
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 AAGAAGAGGGTATTGACCTCGTCACTGTTCTACCATCCTTCCTTGTTGGACCCAGTCTGC 600
Query 601 CTCCTGATTTATGTTCTACAGCTTCCGATGTCCTCGGATTACTGAAAGGAGAAACAGAGA 660
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 CTCCTGATCTATGTTCTACAGCTTCGGATGTCCTCGGATTACTGAAAGGAGAAACAGAGA 660
Query 661 AGTTCCAATGGCATGGACAAATGGGGTATGTTCATATCGATGACGTTGCACGAACCCACA 720
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 661 AGTTCCAATGGCATGGACAAATGGGGTATGTTCATATCGATGATGTTGCACGAACCCACA 720
Query 721 TAGTCGTTTTCGAACACGAAGCAGCTCAAGGCAGATACATTTGTAGCTCTAACGTTATCA 780
|| | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 721 TACTTGTTTTTGAACATGAAGCAGCGCAAGGCAGATACATTTGCAGCTCTAACGTTATCA 780
Query 781 GTCTAGAGGAACTCGTTTCATTCCTATCTGCTCGTTACCCATCACTCCCTATCCCCAAGA 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTCTAGAGGAACTAGTTTCATTCCTATCTGCTCGTTACCCATCACTCCCTATCCCCAAGA 840
Query 841 GGTTTGAGAAACTAAATAGGTTGCATTACGACTTTGACACCTCGAAGATACAGAGTCTCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGTTTGAGAAACTAAATAGGTTGCATTACGACTTTGACACCTCGAAGATACAGAGTCTCG 900
Query 901 GGCTCAAGTTCAAGTCCCTTGAAGAGATGTTCGATGACTGCATTGCCTCATTAGTCGAGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGCTCAAGTTCAAGTCCCTTGAAGAGATGTTCGATGACTGCATTGCCTCATTAGTCGAGC 960
Query 961 AAGGCTATTTATCTACTGTTCTTCCATAACTCTTGGACTAGAGAATATGTGCAAATAAGA 1020
|||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||
Sbjct 961 AAGGCTATTTATCTACTGGTCTTCCATAACTCTTAGACTAGAGAATAGGTGCAAATAAGA 1020
Query 1021 TTGGTCTGAAATAGTAGTCATGTGGATTCACAATGAAAGAATGGGATTGGAAAACATGA 1079
||| ||||||||||||| ||| |||||||||| | ||||||| | || ||| |||||||
Sbjct 1021 TTGCTCTGAAATAGTAGACATTTGGATTCACATTTAAAGAATAGAATCGGATAACATGA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5