BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35460.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944345 jgi|Araly1|944345|scaffold_700574.1 1881 0.0
Ahg319692 jgi|Araly1|319692|fgenesh1_pm.C_scaffold_3002708 963 0.0
> Ahg944345 jgi|Araly1|944345|scaffold_700574.1
Length=1171
Score = 1881 bits (1018), Expect = 0.0
Identities = 1119/1168 (96%), Gaps = 6/1168 (1%)
Strand=Plus/Plus
Query 14 AAGTAAATTCGTTCCTAATGAACTGTGTGAGTCGTTTAAAGTGTTTGATAAGCAAAGCAC 73
||||||||||| ||| |||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 7 AAGTAAATTCGCTCCCAATGAATTGTATGACTCGTTTAAAGTGTTTGATAAGCAAAGCAC 66
Query 74 GAAGCTTTGCACGGCTTGGTGGTGAATCCACTCTCTCTCAACCGCCGTCTCTCGCCTCCG 133
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 67 GAAGCTTTGCACGGCTTGGTGGTGAGTCCACTCTCTCTCAACCGCCGTCTCTCGCCTCCG 126
Query 134 CCGCGTTTTCTTCATCCGCCGTCATGAATGGTCTCGAAACTCACAACACAAGGCTCTGTA 193
|| || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 127 CCACGGTTTCTTCATCCGCCGTCATGAATGGCCTCGAAACTCATAACACAAGGCTCTGTA 186
Query 194 TCGTAGGAAGTGGCCCAGCGGCACACACGGCGGCGATTTACGCAGCTAGGGCTGAACTTA 253
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TCGTAGGTAGTGGCCCAGCGGCACACACGGCGGCGATTTACGCAGCTAGGGCTGAACTTA 246
Query 254 AACCTCTTCTCTTCGAAGGATGGATGGCTAACGACATCGCTCCCGGTGGTCAACTAACAA 313
| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 247 AGCCTCTTCTATTCGAAGGATGGATGGCTAACAACATCGCTCCCGGCGGTCAACTAACAA 306
Query 314 CCACCACCGACGTCGAGAA-TTTCCCCGGATTTCCAGAAGGTATTCTCGGAGTAGAGCTC 372
||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||
Sbjct 307 CCACCACCGACGTCGAGAACTTT-CCCGGATTTCCGGAAGGTATTCTCGGAGCAGAGCTC 365
Query 373 ACTGACAAATTCCGTAAACAATCGGAGCGATTCGGTACTACGATATTTACAGAGACGGTG 432
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 366 ACTGACAAATTCCGTAAACAATCAGAGCGATTCGGTACTACGATCTTCACAGAGACGGTG 425
Query 433 ACGAAAGTCGATTTCTCTTCGAAACCGTTTAAGCTATTCACAGATTCAA-AAGCCATTCT 491
|||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 426 ACGAAAGTTGATTTCTCTTCGAAACCGTTTAAGCTATTCACAGATTCAAGAA-CCGTTCT 484
Query 492 CGCTGACGCTGTGATTCTCGCTACTGGAGCTGTGGCTAAGCGGCTTAGCTTCGTTGGATC 551
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 485 CGCTGACGCTGTTATTCTCGCTACTGGAGCTGTGGCTAAGCGGCTTAACTTCGTTGGCTC 544
Query 552 TGGTGAAGCTTCTGGAGGTTTCTGGAACCGTGGAATCTCCGCTTGTGCTGTTTGCGACGG 611
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGGTGAAGGTTCCGGAGGTTTCTGGAACCGTGGAATCTCCGCTTGTGCTGTTTGCGACGG 604
Query 612 AGCTGCTCCGATATTCCGTAACAAACCTCTTGCGGTGATCGGTGGAGGCGATTCAGCAAT 671
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 605 AGCTGCTCCGATTTTCCGTAACAAACCTCTTGCGGTTATCGGTGGAGGCGATTCAGCAAT 664
Query 672 GGAAGAAGCAAACTTTCTTACAAAATATGGATCTAAAGTGTATATAATCCATAGGAGAGA 731
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 665 GGAAGAAGCAAACTTTCTCACCAAATATGGATCAAAAGTGTATATAATCCATAGGAGAGA 724
Query 732 TGCTTTTAGAGCGTCTAAGATTATGCAGCAGCGAGCTTTGTCTAATCCTAAGATTGATGT 791
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 725 TGCTTTTAGAGCGTCTAAGATTATGCAGCAGCGGGCTTTGTCTAATCCTAAGATTGATGT 784
Query 792 GATTTGGAACTCGTCTGTTGTGGAAGCTTATGGAGATGGAGAAAGAGATGTGCTTGGAGG 851
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GATTTGGAACTCTTCGGTTGTGGAAGCTTATGGAGATGGAGAAAGAGATGTGCTTGGAGG 844
Query 852 ATTGAAAGTGAAGAATGTGGTTACCGGAGATGTTTCTGATTTAAAAGTTTCTGGATTGTT 911
|||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 845 ATTGAAAGTGAAGAATGTGGTTACTGGACATGTTTCTGATTTGAAAGTTTCTGGATTGTT 904
Query 912 CTTTGCTATTGGTCATGAGCCAGCTACCAAGTTTTTGGATGGTGGTGTTGAGTTAGATTC 971
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 905 CTTTGCTATTGGTCATGAGCCAGCTACCAAGTTTTTAGATGGTGGTGTTGAGTTAGATTC 964
Query 972 GGATGGTTATGTTGTCACGAAGCCTGGTACTACACAGACTAGCGTTCCCGGAGTTTTCGC 1031
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GGATGGTTATGTTGTGACCAAGCCTGGTACTACACAGACTAGCGTTCCCGGAGTTTTCGC 1024
Query 1032 TGCGGGTGATGTTCAGGATAAGAAGTATAGGCAAGCCA-TCACTGCTGCAGGAACTGGGT 1090
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1025 TGCGGGTGATGTTCAGGATAAGAAGTATAGGCAAGC-AGTCACTGCTGCAGGAACTGGGT 1083
Query 1091 GCATGGCAGCTTTGGATGCAGAGCATTACTTACAAGAGATTGGATCTCAGCAAGGTAAGA 1150
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1084 GCATGGCAGCTCTGGATGCAGAGCATTACTTACAGGAGATTGGATCTCAGCAAGGTAAGA 1143
Query 1151 GTGATTGAGGAAATTGTTGGAAGGCTCA 1178
||||||||||||||||||||||||||||
Sbjct 1144 GTGATTGAGGAAATTGTTGGAAGGCTCA 1171
> Ahg319692 jgi|Araly1|319692|fgenesh1_pm.C_scaffold_3002708
Length=1146
Score = 963 bits (521), Expect = 0.0
Identities = 851/1007 (85%), Gaps = 35/1007 (3%)
Strand=Plus/Plus
Query 169 GAAACTCACAACA-CAAGGCTCTGTATCGTAGGAAGTGGCCCAGCGGCACACACGGCGGC 227
||||||||||| | ||||| |||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 154 GAAACTCACAAAACCAAGG-TCTGCATCGTCGGAAGTGGACCAGCAGCACACACGGCGGC 212
Query 228 GATTTACGCAGCTAGGGCTGAACTTAAACCTCTTCTCTTCGAAGGATGGATGGCTAACGA 287
||| || ||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 213 GATCTATGCATCTAGAGCTGAGCTTAAGCCTCTTCTCTTCGAAGGATGGATGGCTAACGA 272
Query 288 CATCGCTCCCGGTGGTCAACTAACAACCACCACCGACGTCGAGAATTTCCCCGGATTTCC 347
||||| ||||| |||||| ||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 273 TATCGCCCCCGGCGGTCAATTAACAACAACCACCGACGTCGAGAACTTCCCTGGATTCCC 332
Query 348 AGAAGGTATTCTCGGAG-TAGAGCTCACTGACAAATTCCGTAAACAATCGGAGCGATTCG 406
|||||||| ||||| | | ||| || ||| |||||| | |||||||||||| ||||||
Sbjct 333 TGAAGGTATCCTCGGTGCT-GAGATCGTTGAGAAATTCAGAAAACAATCGGAGAGATTCG 391
Query 407 GTACTACGATATTTACAGAGAC-GGTGACGAAAGTCGATTTCTCTTCGAAACCGTTTAAG 465
|||||| ||| || || || || | | || ||||| |||||||| |||||||||||||||
Sbjct 392 GTACTAAGATCTTCACGGAAACTGTTAAC-AAAGTTGATTTCTCATCGAAACCGTTTAAG 450
Query 466 CTATTCACAGATTC-AAAAGCCATTCTCGCTGACGCTGTGATTC-TCGCTACTGGAGCTG 523
|||||||| ||||| | || | |||||||||| |||| | || | ||||||||||||
Sbjct 451 CTATTCACTGATTCGAGAA-CTGTTCTCGCTGATTCTGT-AATCATTTCTACTGGAGCTG 508
Query 524 TGGCTAAGCGGCTTAGCTTCGTTGGATCTGGTGAAGCT-TCTGGAGGTTTCTGGAACCGT 582
| ||||| || ||||||||| |||||||||||||| | | || ||||| ||||| |||
Sbjct 509 TTGCTAAACGTCTTAGCTTCACTGGATCTGGTGAAGGTAAC-GGTGGTTTTTGGAATCGT 567
Query 583 GGAATCTCCGCTTGTGCTGTTTGCGACGGAGCTGCTCCGATATTCCGTAACAAACCTCTT 642
|| |||||||||||||||||||||||||||||||||||||| || | || || ||| ||
Sbjct 568 GGTATCTCCGCTTGTGCTGTTTGCGACGGAGCTGCTCCGATTTTTAGGAATAAGCCT-TT 626
Query 643 GCGGTG--ATCGGTGGAGGCGATTCAGCAATGGAAGAAGCAAACTTTCTT-ACAAAATAT 699
| | || || ||||| || ||||| || ||||| ||||| || |||| | || || |||
Sbjct 627 G-GTTGTTATTGGTGGTGGTGATTCGGCTATGGAGGAAGCTAA-TTTCCTCACTAAGTAT 684
Query 700 GGATCTAAAGTGTATATAATCCATAGGAGAGATGCTTTTAGAGCGTCTAAGATTATGCAG 759
|||||||| || ||||||||||||||||| ||| | ||||| ||||||||||||||||||
Sbjct 685 GGATCTAAGGTTTATATAATCCATAGGAGGGATACGTTTAGGGCGTCTAAGATTATGCAG 744
Query 760 CAGCGAGCTTTGTCTAATCCTAAGATTGATGTGATTTGGAACTC-GTCTGTTGTGGAAGC 818
||| ||||||||||||| ||||||||||| |||||||||||||| | | || ||||| ||
Sbjct 745 CAGAGAGCTTTGTCTAACCCTAAGATTGAAGTGATTTGGAACTCTG-CGGTGGTGGAGGC 803
Query 819 TTATGGAGATGGAGAAA-G--AGATGTG--CTTGGAGGATTGAAAGTGAAGAATGTGGTT 873
||||||||||| | ||| | | | ||| |||||||||||||| ||||||||||| |||
Sbjct 804 TTATGGAGATG-A-AAATGGCAAAGGTGTTCTTGGAGGATTGAAGGTGAAGAATGTTGTT 861
Query 874 ACCGGAGATGTTTCTGATTTAAAAGTTTCTGGATTGTTCTTTGCTATTGGTCATGAGCCA 933
|| |||| |||||| ||||| || || |||||||||||||||||||||||||||||||||
Sbjct 862 ACTGGAGTTGTTTCAGATTTGAAGGTGTCTGGATTGTTCTTTGCTATTGGTCATGAGCCA 921
Query 934 GCTACCAAGTTTTTGGATGGTGGTG-TTGAG-TTAGATTCGGATGGTTATGTTGTCACGA 991
||||| |||||||||||||| | | ||||| || ||| |||||||||||||| || |
Sbjct 922 GCTACGAAGTTTTTGGATGG-GCAGCTTGAGCTT-GATGAAGATGGTTATGTTGTGACTA 979
Query 992 AGCCTGGTACTAC-ACAGACTAGCGTTCCCGGAGT-TTTCGCTGCGGGTGATGTTCAGGA 1049
||||||||||||| | |||| ||||| || || ||| ||||| || |||||||| ||
Sbjct 980 AGCCTGGTACTACTA-AGACGAGCGTGGTTGGTGTATTT-GCTGCTGGAGATGTTCAAGA 1037
Query 1050 TAAGAAGTATAGGCAAGCCATCACTGCTGCAGGAACTGGGTGCATGGCAGCTTTGGATGC 1109
||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1038 CAAGAAGTATAGACAGGCCATCACTGCTGCAGGAACTGGGTGCATGGCGGCTTTGGACGC 1097
Query 1110 AGAGCATTACTTACAAGAGATTGGATCTCAGCAAGGTAAGAGTGATT 1156
||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1098 AGAGCATTACTTACAAGAGATTGGATCTCAGGAGGGTAAGAGTGATT 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5