BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35470.1
Length=2478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888523 jgi|Araly1|888523|Al_scaffold_0007_509 2628 0.0
> Ahg888523 jgi|Araly1|888523|Al_scaffold_0007_509
Length=1653
Score = 2628 bits (1423), Expect = 0.0
Identities = 1586/1662 (95%), Gaps = 21/1662 (1%)
Strand=Plus/Plus
Query 231 ATGGATTTGATGCAAATGGATAAGCGTTTGGATTCAACGGAGCAAGTGGTTGAAGAAATC 290
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGATTTGATACAAATGGATAAGCGTTTGGATTCAACAGAGCAAGTGGTTGAAGAAATC 60
Query 291 ATGAGAATTCACAGATCTCTACC-CGCAAGACCAGGAATTGACGAAGTTGAAGCTGCCAA 349
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 ATGAGAATTCACAGATCTCTACCAC-CAAGACCAGGAATTGACGAAGTTGAAGCTGCCAA 119
Query 350 GGGTTTGATTGACAACGTTGAGAAAGAAGATCAAGCTTGTTTAGAAGCCATTGCTAGACA 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 GGGTTTGATTGACAACGTTGAGAAAGAAGATCAAGCTTGTTTAGAAGCCATTGCTAAACA 179
Query 410 GAGGAAAAGCTCTGAAGTTCCTGGTGAGCTTTTCATGGTGTTGCAAGAAATGAAGAAGGG 469
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 180 GAGGAAAAGCTCTGAAGTTCCTGGTGAGCTTCTCATGGTGTTGCAAGAAATGAAGAAAGG 239
Query 470 TTATGTTCAGTTTCGTAGCAAAGAACAGATAA-GAGAAGCTTTGAAGCTTCTCGATCTGG 528
||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct 240 TTATGTTCAGTTTCGTACCAAAGAACAGA-AACGAGAAGCTTCAAAGCTTCTCGATCTGG 298
Query 529 AATCTGTTCACTCTTTGTTCGATGATTTCATTCAAAGAGCTTCTAATTGCATTGCTTCTC 588
|| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 299 AAAGTATTCACGCTTTGTTCGATGATTTCATTCAAAGAGCTTCTAATCGCATTGCTTCTC 358
Query 589 CTTCCTCTAACGGCTCTGTTTCGTCTCGTCCTCCGCTGCCTCCGGCGACTAC---GACGG 645
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 CTTCCTCTAACGGCTCTGTTTCGTCTCGTCCTCCGCTGCCTCCGGCGACTACAACGACGG 418
Query 646 CTGCTCGTTCTGATTCTCAGTCAAGTTTGAATTTTTCTGAGAGAG-CTCCCGTTCGCCCC 704
||| |||||||||||||||||||||||||||||||||||||| || |||| ||||| |||
Sbjct 419 CTGTTCGTTCTGATTCTCAGTCAAGTTTGAATTTTTCTGAGA-AGGCTCCTGTTCGTCCC 477
Query 705 AAGGATATGGTTTCGCGAGACGATAGCTTCGTC---ACAAAGTCTAAGCCTTCTTCTCTC 761
|||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct 478 AAGGATATGGTTTCACGAGACGATAGCTTCGTCGTCACAAAGTCTAAGCCTTCT-CTCT- 535
Query 762 TACAGTGATGGTTTTGCAGCTCCTCCTCGAAG-ACCACAGATTCTCGATTCAACACTTAC 820
|||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 536 -ACAGTGATGGTTTTGCAGCTCCACGAA-AACCACCACAGATTCTCGATTCAACACTTAC 593
Query 821 CACCGGCAATGATGGAGAGAAGCTGAGTTTGATAAAACTTGCTAGTTTGATTGAGGTATC 880
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CGCCGGCAATGATGGAGAGAAGCTGAGTTTGATAAAACTTGCTAGTTTGATTGAGGTATC 653
Query 881 AGCTAAGAAAGCTACACAAGAGATAAATCTACAGAACAAGTTAACGGAACAACTCGAGTG 940
||||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 654 AGCTAAGAAAGCTACTCCAGAGATAAATCTACAGAACAAGTTAACGGATCAAGTCGAGTG 713
Query 941 GCTTCCAGATTCTCTTGGCAAGTTATCGAGTTTAACTTCGCTTGATTTGTCTGAGAATCA 1000
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 714 GCTTCCGGATTCTCTTGGCAAGTTATCGAGCTTAACTTCGCTTGATTTGTCTGAGAATCA 773
Query 1001 CATTGTGGTGTTGCCAAACACTATAGGAGGACTTTCTTCCTTGACAAAACTCGATTTGCA 1060
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 774 CATTGTGGTGTTGCCAAACACTATAGGAGGACTTTCTTCCTTGACAAAGCTCGATTTGCA 833
Query 1061 TTCCAACAGAATCGGTCAGCTTCCTGAGTCTATAGGAGAATTGTTGAACTTGGTTTACCT 1120
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 834 TTCTAACAGAATCGGTCAGCTTCCTGAGTCTATTGGAGAATTGTTGAACTTGGTTTACCT 893
Query 1121 CAATCTTGGTAGCAACCAGTTATCATCT-CTGCCTTCAGCGTTTAGTAGATTGGTTCGAC 1179
||||||||||||||||||||||| | | ||||||||||||||||| |||||||| ||||
Sbjct 894 TAATCTTGGTAGCAACCAGTTATCGT-TGCTGCCTTCAGCGTTTAGCAGATTGGTGCGAC 952
Query 1180 TCGAGGAGCTTGATTTGAGCTGTAACAACCTCCCGATTCTCCCTGAATCCATAGGTTCGC 1239
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 953 TCGAGGAGCTTGATTTGAGCTGTAACAACCTCCCGATTCTCCCTGAATCGATCGGTTCTC 1012
Query 1240 TTGTGAGTCTAAAGAAGCTCGACGTTGAGACAAATGATATCGAAGAGATCCCATATTCTA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TTGTGAGTCTAAAGAAGCTCGACGTTGAGACAAATGATATCGAAGAGATCCCATATTCTA 1072
Query 1300 TTGGTGGATGTTCTTCTCTGATAGAACTCCGTGCAGATTATAACAAACTAAAGGCTCTTC 1359
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1073 TTGGTGGATGTTCTTCTCTGAAAGAACTCCGTGCAGATTATAACAAACTCAAGGCTCTTC 1132
Query 1360 CAGAAGCTATTGGGAAGATTACTACATTAGAGATCTTGTCTGTGCGTTACAATAACATCA 1419
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1133 CTGAAGCTATTGGGAAGATTACTACATTAGAGATCTTGTCTGTCCGTTACAATAACATCA 1192
Query 1420 GGCAGTTACCTACGACGATGTCTTCTTTAGCTAGCCTCAAAGAGCTGGATGTGAGTTTCA 1479
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1193 GGCAGTTACCTACGACGATGTCTTCTTTAGCTAACCTCAAAGAGCTGGATGTCAGTTTCA 1252
Query 1480 ACGAGCTCGAGTCAGTGCCAGAGAGTTTGTGTTTTGCCACTACACTTGTGAAACTGAATA 1539
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1253 ACGAGCTCGAGTCAGTGCCAGAGAGTTTGTGTTTTGCCACTACGCTTGTGAAGCTGAATA 1312
Query 1540 TTGGAAACAATTTCGCTGACATGGTATCGCTCCCGAGATCAATAGGCAACCTTGAGATGC 1599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1313 TTGGAAACAATTTCGCTGACATGATATCGCTCCCGAGATCAATAGGCAACCTTGAGATGC 1372
Query 1600 TTGAAGAGCTTGATATAAGCAATAATCAGATCCGTGTTCTACCTGACTCCTTCAAAATGC 1659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1373 TTGAAGAGCTTGATATAAGCAATAATCAGATCCGTGTTCTACCTGAATCCTTCAAAATGC 1432
Query 1660 TTACAAAGTTGCGTGTGTTTCGTGCTCAGGAGAATCCACTACACATT-CCTCCTCGTGAT 1718
||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1433 TTACAAAGTTGCGTGTGCTTCGTGCTCAGGAGAATCCACTACA-AGTACCTCCTCGTGAT 1491
Query 1719 ATAGCTGAAAAGGGCCCTCAGGCCGTTGTTCAATACATGAATGATCTTGTGGAGACGAGA 1778
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 ATAGCCGAAAAGGGCCCTCAGGCCGTTGTTCAATACATGAATGATCTTGTGGAGACGAGA 1551
Query 1779 AACGCGAAATCTCTAATGGTTAAGCCAAAGAAGAGCTGGGTCCAGATGTGCTTCTTCTCG 1838
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AATGCGAAATCTCTATTGGTTAAGCCAAAGAAGAGCTGGGTCCAGATGTGCTTCTTCTCC 1611
Query 1839 AAATCCAACAAGAGAAAACAGAGCAGCATGGAGATTGTCTAA 1880
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AAATCCAACAAGAGAAAACAGAGCAGCATGGAGATTGTCTAA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93397280740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5