BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35480.1
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491099 jgi|Araly1|491099|fgenesh2_kg.7__532__AT4G35480.1 1205 0.0
> Ahg491099 jgi|Araly1|491099|fgenesh2_kg.7__532__AT4G35480.1
Length=865
Score = 1205 bits (652), Expect = 0.0
Identities = 804/875 (92%), Gaps = 19/875 (2%)
Strand=Plus/Plus
Query 1 ATTATAACTTGGATCAGATTCTTCTTCTCCTCTAAACAACAACAAAGTCTCTCTTCCTTC 60
|||||||||||||||||||||||||||| ||||||||||||||||| | | |||||| ||
Sbjct 1 ATTATAACTTGGATCAGATTCTTCTTCTTCTCTAAACAACAACAAAAT-T-TCTTCCCTC 58
Query 61 TGTCTTTCAC-A-TTTCCTCTTCCCCTAAAAACAGAACTCAAAACCAAAACAAAATGACT 118
|||||||||| | ||||||||| | ||||| ||| ||||||||| |||||||||||||||
Sbjct 59 TGTCTTTCACAACTTTCCTCTTTCTCTAAAGACAAAACTCAAAATCAAAACAAAATGACT 118
Query 119 CGCTCCTCTAGATTCCTTGGTACGGCGTCGCCTCCACCACCGGAAGAAATCCTCGCCGCC 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 CGCTCCTCTAGATTCCTTGGTACGGCGTCGCCTCCACCGCCGGAAGAAATCCTCGCCGCC 178
Query 179 GAAACCGACATGGTTGTGATTCTCTCAGCACTTCTCTGCGCTCTCGTATGCGTAGCCGGT 238
||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 179 GAAACCGACATGGTTGTGATTCTCTCAGCCCTTCTCTGCGCTCTCATATGCATAGCCGGC 238
Query 239 TTAGCCGCCGTAGCTCGCTGCGCTTGGCTCCGCCGTCTCACCGGAGTTAATCCCGCCGCC 298
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 239 TTAGCCGCCGTAGCTCGCTGCGCTTGGCTCCGCCGTCTCACCGGCGCTAATTCCGCCGCC 298
Query 299 GTCGGAGAAGCTCCACCGCCTAACAAAGGCCTCAAGAAAAAAGCACTTCAAGCTCTCCCT 358
||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTCGGAGAATCACCGCCGCCGAACAAAGGCCTCAAGAAAAAAGCACTTCAAGCTCTCCCT 358
Query 359 AAATCAACTTACACCGCCTCTGCCTCTACCGCCGCCGCCGCTGACGATCTACCGTGCTCT 418
||||||||||||||||||||||| ||||||||| ||||||| || ||| || | |||||
Sbjct 359 AAATCAACTTACACCGCCTCTGCTTCTACCGCCACCGCCGCAGATGATTTATCATGCTCC 418
Query 419 TCAGTCGGAGACGGAGATTCATCCACCGAGTGTGCAATATGCATAACGGAATTTTCGGAG 478
|| | |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 419 TCCGGCGGAGAAGGAGATTCATCCACCGAGTGTGCGATATGCATAACGGAATTTTCCGAC 478
Query 479 GGCGAAGAAATCAGAATCTTACCGCTGTGTAGTCACGCCTTCCACGTGGCGTGTATAGAC 538
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGCGACGAGATCAGGATCTTACCGCTGTGTAGTCACGCCTTCCACGTGGCGTGTATAGAT 538
Query 539 AAGTGGTTGACTTCACGGTCGTCGTGTCCGTCTTGTCGTCGGATACTGGTGCCGGTGAAG 598
|| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 539 AAATGGTTGACTTCACGGTCGTCGTGTCCTTCTTGTCGTCGGATATTGGTGCCGGTGAAG 598
Query 599 TGTGATAGGTGTGGGCACCATGCTTCGACGGCGGAGACTCAGGTCAAAGATCAACCTCCT 658
|||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 599 TGTGATAGGTGTGGCCACCATGCTTCCACGGCGGAGACTCAGATCAAAGATCAACCTCCT 658
Query 659 CATCACCAACATCCTTCACAGTTCACTTCCGCCATTATTCCTGCTTTTCTTCCTTGAAAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 CATCACCAACATCCTTCACAGTTCACTTCCGCCATTATTCCTGCTTTTCTTCCTTGAGAT 718
Query 719 GTTTTCACTTTATTAAATTTTTATAATTTGCTAAAAATATCGGCATGATTAAA-A---GT 774
||| ||||||||| | |||||||||||||||||||||||||||||||||||| | ||
Sbjct 719 -TTT-CACTTTATTTA-TTTTTATAATTTGCTAAAAATATCGGCATGATTAAAGAAAAGT 775
Query 775 AAAGTAT-TAATTAATTAGGAATTAGTG--ATCTTTAGTTAAGTACTTTTATATTTCTCC 831
||||| | |||||||||||||||||||| ||||||||||| ||| || |||||||
Sbjct 776 AAAGT-TCTAATTAATTAGGAATTAGTGTGATCTTTAGTTA----CTTCGATTTTTCTCC 830
Query 832 TCTGTAATCCTCTGTTCTGAATTAATCAGATGAAA 866
||||||||| ||||| ||||||||||||||||||
Sbjct 831 ACTGTAATCCACTGTTATGAATTAATCAGATGAAA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32366356533
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5