BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G35490.1

Length=773
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944342 jgi|Araly1|944342|scaffold_700571.1                        837    0.0  


> Ahg944342 jgi|Araly1|944342|scaffold_700571.1
Length=511

 Score =  837 bits (453),  Expect = 0.0
 Identities = 490/507 (97%), Gaps = 5/507 (1%)
 Strand=Plus/Plus

Query  1    CATCACGATCGCAACAATGGCGGCTGCTGCGAAGGAGATCCT---ACGGCGACCAGTGGC  57
            |||||||||||||||||||||||| ||||||||||||||| |   |||||||||||||||
Sbjct  5    CATCACGATCGCAACAATGGCGGCGGCTGCGAAGGAGATCTTAACACGGCGACCAGTGGC  64

Query  58   GGCAACAATAAGGCTAACCGTTCCGGCGGGAGGAGCGAGGCCAGCCCCACCGGTAGGTCC  117
            ||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct  65   GGCAACAATAAGGCTAACCGTTCCGGCAGGAGGAGCAAGGCCAGCACCACCGGTAGGCCC  124

Query  118  GGCGCTAGGTCAGTACAGGCTTAACCTGATGGCTTTCTGCAAAGACTTCAACGCTAGGAC  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  125  GGCGCTAGGTCAGTACAGGCTTAACCTGATGGCTTTCTGCAAAGACTTCAACGCTCGGAC  184

Query  178  TCAAAAGTACAAACCAGACACTCCGATGGCCGTGACGATAACGGCGTTCAAGGACAACTC  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  TCAAAAGTACAAACCAGACACTCCGATGGCCGTGACGATAACGGCGTTCAAGGACAACTC  244

Query  238  TTTCGAATTCACCGTCAAGTCTCCGACGGTGTCGTGGTACATCAAGAAAGCAGCTGGAGT  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  TTTCGAATTCACCGTCAAGTCTCCGACGGTGTCGTGGTACATCAAGAAAGCAGCTGGAGT  304

Query  298  CGATAAAGGAAGCACACGCCCGGGTCATTTGTCGGTGACGACGCTATCGGTGAGACACGT  357
            |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct  305  CGATAAAGGAAGCACACGACCGGGTCATTTGACGGTGACGACGCTATCGGTGAGACACGT  364

Query  358  GTACGAGATCGCGAAGGTGAAGCAGACGGATCCGTTTTGTCAGTATATGCCGTTGGAATC  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  365  GTACGAGATCGCGAAGGTGAAGCAGACGGATCCGTTTTGTCAGTATATGCCATTGGAATC  424

Query  418  GATTTGCAAATCCATCATTGGTACTGCTAATTCTATGGGTATCAAGATCGTTCAGGATTT  477
            |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  425  GATTTGCAAATCTATCATTGGTACTGCTAATTCTATGGGTATCAAGATCGTTAAGGATTT  484

Query  478  GGAGTGAT--TTTAGGGTTTCTGATGA  502
            ||||||||  |||||||||||||||||
Sbjct  485  GGAGTGATGATTTAGGGTTTCTGATGA  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28515941916


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5