BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35500.2
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491097 jgi|Araly1|491097|fgenesh2_kg.7__530__AT4G35500.1 2313 0.0
Ahg480640 jgi|Araly1|480640|fgenesh2_kg.3__3341__AT2G17530.1 1247 0.0
Ahg343373 jgi|Araly1|343373|fgenesh1_pg.C_scaffold_3003136 1245 0.0
> Ahg491097 jgi|Araly1|491097|fgenesh2_kg.7__530__AT4G35500.1
Length=1627
Score = 2313 bits (1252), Expect = 0.0
Identities = 1488/1597 (93%), Gaps = 35/1597 (2%)
Strand=Plus/Plus
Query 33 TCTTTGTCTTTGTTTGGGTCCTTGCCAAGATCCAATTTTTACGATCAAAATCGACCC--- 89
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 TCTTTCTCTCTCTTTGGGTCCTTGCCAAGATCCAATTTTTACGATCAAAATCGACCCGGT 107
Query 90 GGTGGAATTCAGACACGTCTTTTAGATAGAGATATGTCTTGTTCATCTTCTTCCGGATCA 149
||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 108 GGTGGTATTCAGACACGTC-TTTAGATAGAGATATGTCGTGTTCATCTTCTTCCGGATCA 166
Query 150 GAAGGAGAAGAAGAGGGTTTCGATGCTTACCGTAAAGGTGGTTATCACGCCGTCAGGATC 209
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 GAAGGAGAAGAAGAAGGTTTCGATGCTTACCGTAAAGGTGGTTATCACGCCGTCAGGATC 226
Query 210 GGCGATCCTTTTTCCGGTGGTCGTTACATCGCTCAGAGAAAGCTTGGTTGGGGTCAATTC 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 GGCGATCCTTTTTCCGGTGGTCGTTACATCGCTCAGAGAAAGCTTGGTTGGGGTCAATTC 286
Query 270 TCCACCGTTTGGCTTGCCTACGATACGCTCACCTCTAA-TGTTTTGCTTTGTATGTTTTT 328
|||||||||||||||||||||||||| | ||||||||| | | |||||||| | | ||
Sbjct 287 TCCACCGTTTGGCTTGCCTACGATACTCGCACCTCTAATTATGTTGCTTTG-AAG-ATTC 344
Query 329 ATGTCTCTTTGCACAACAATTTGCTCAAGCTGCACTTCACGAAATCGAATTTCTTTCAGC 388
| | |||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 345 A-G-AAGAGCGCACAACAGTTTGCTCAAGCTGCACTTCACGAAATCGAGTTCCTTTCAGC 402
Query 389 TGCTGCTGATGGGGATCTCGACAAGACGAAATGTGTTGTTCGTCTTATTGACCATTTCAA 448
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 403 TGCTGCTGATGGAGATCTCGCCAATACGAAATGTGTTGTTCGTCTTATTGACCATTTCAA 462
Query 449 GCATAGTGGTCCAAATGGGCAGCATTTATGCATGGTGCTTGAGTTTCTCGGCGATAGCTT 508
||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 463 GCATACTGGTCCAAATGGGCAGCATTTATGTATGGTGCTTGAGTTTCTTGGTGATAGCTT 522
Query 509 GCTCCGTTTAATCAGATACAACCAGTACAAAGGTCTGAAACTGAATAAAGTCCGGGAGAT 568
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 523 GCTCCGTTTAATCAGATACAACCATTACAAAGGTCTGAAAATAAATAAAGTCCGGGAGAT 582
Query 569 TTGCAGATGTATACTGACTGGTTTAGATTATTTGCACCGTGAGCTCGGTATGATTCACTC 628
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TTGCAGATGTATATTGACTGGTTTAGATTATTTGCACCGTGAGCTCGGTATGATTCACTC 642
Query 629 CGACTTAAAACCTGAAAACATTCTTCTTTGTTCCACCATTGACCCTGCCAAAGATCCCGT 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CGACTTAAAACCTGAAAACATTCTTCTTTGTTCCACCATTGACCCTGCCAAAGATCCCGT 702
Query 689 TAGATCTGGACTCACCCCACTATTAGAAAAACCAGAGGGAAACGCAAACGGTGGCGCATC 748
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 703 TAGATCTGGACTAACCCCACTATTAGAAAAGCCAGAGGGAAACGCAAACGGTGGTGGATC 762
Query 749 AACAATGAATCTGATTGAGAAGAAACTAAAGAGAAGAGCGAAAAGAGCGGTTGCTAAAAT 808
|| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 763 CACTATGAATCTGATTGAGAAGAAGCTAAAGAGAAGAGCAAAAAGAGCGGTTGCTAAAAT 822
Query 809 ATCAGAAAGAAGAGTCTCAATGGT---T---ACAGGTGAAGAAGCATCATCGAAAACGGA 862
|||||||||||||||||||||||| | ||||||||||||||||||||||| || ||
Sbjct 823 ATCAGAAAGAAGAGTCTCAATGGTGGGTGCTACAGGTGAAGAAGCATCATCGAAGACAGA 882
Query 863 AAAAAGTCTAGATGGGATTGATATGAGATGCAAAGTGGTTGACTTTGGTAACGCTTGTTG 922
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AAGAAGTCTTGATGGGATTGATATGAGATGCAAAGTGGTTGACTTTGGTAACGCTTGTTG 942
Query 923 GGCTGATAAACAGTTTGCTGAAGAGATACAAACAAGACAGTATCGAGCTCCTGAAGTAAT 982
|||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 943 GGCTGATAAACAGTTTGCGGAAGAGATACAAACGAGACAGTATAGAGCTCCTGAAGTAAT 1002
Query 983 ACTAAAGTCAGGATACTCTTTCTCTGTTGATATGTGGTCTTTTGGTTGTACGGCTTTCGA 1042
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1003 ACTTAAGTCAGGATACTCTTTCTCTGTTGATGTGTGGTCTTTTGGTTGTACGGCTTTCGA 1062
Query 1043 GCTTGTCACAGGAGATATGCTATTTGCACCTAAAGATGGAAATGGTTATGGGGAAGACGA 1102
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1063 GCTTGTCACAGGAGATATGCTATTTGCTCCTAAAGATGGAAATGGTTATGGAGAAGACGA 1122
Query 1103 GGATCACCTTGCTCTTATGATGGAACTCCTAGGAAAGATGCCTCGAAAGATTGCCATTGG 1162
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1123 GGATCACCTTGCTCTTATGATGGAACTCCTAGGAAAGATGCCTCGAAAGATTGCGATTGG 1182
Query 1163 AGGGGCGAAATCGAAAGACTACTTTGACAGACACGGGGACTTAAAGAGAATCCGACGGTT 1222
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1183 AGGGGCGAAATCCAAAGACTACTTTGACAGACACGGGGATTTAAAGAGAATCCGGCGGTT 1242
Query 1223 GAAATATTGGCCACTTGATCGCTTGCTGATTGATAAATATAAGCTTCCGGAAGCAGAAGC 1282
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GAAGTATTGGCCACTTGATCGCTTGCTGATTGATAAATATAAGCTTCCGGAAGCAGAAGC 1302
Query 1283 AAAGGAGTTTGCTGAGTTTCTGACTCCGATTCTTGAGTTTGCGCCGGAGAAACGACCAAC 1342
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1303 AAAGGATTTTGCCGAGTTTCTGACTCCGATTCTTGAGTTTGCGCCAGAGAAACGACCAAC 1362
Query 1343 TGCTCAACAGTGCTTGGATCATCCATGGATGAATGTAACAACACAGAACGATGCAGAAAA 1402
|||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1363 TGCTCAACAGTGCTTGGAACATCCATGGATGAATGTAACAACACAGGACAATGCAGATAA 1422
Query 1403 TGTAGATGACCAAATGAACAACTTGCATATCAAAGGGTGAGAGAAACTCAAACTTCTTGt 1462
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1423 TGTAGATGCCCAAATGAACAACTTGCAGATCAAAGGGTGAGAGAAACTCAAACTTCTTCT 1482
Query 1463 tttttttgtggtttcattcctttgttcgttttcttttaatataactttcttcttctcttt 1522
|| || || ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1483 TT-----GT--TT-CATTCCTTTGTTCATTTTCTTTTAATATAACTTTCTTCTTCTTTTT 1534
Query 1523 atatgtttttt--gttttgt-----ataatt-tctcttttttttttGGGGGGACCTATGA 1574
|||| |||||| ||||||| |||||| | ||||| ||||||| | ||||||||
Sbjct 1535 ATATCTTTTTTTTGTTTTGTTTTGTATAATTGT-TCTTTACTTTTTGGAG--ACCTATGA 1591
Query 1575 TATATTGATTTAACCATCGAGTTCATTTGTTGCTTAT 1611
|||||||||| ||||||||| ||||||||||||||||
Sbjct 1592 TATATTGATT-AACCATCGATTTCATTTGTTGCTTAT 1627
> Ahg480640 jgi|Araly1|480640|fgenesh2_kg.3__3341__AT2G17530.1
Length=1912
Score = 1247 bits (675), Expect = 0.0
Identities = 1137/1353 (84%), Gaps = 60/1353 (4%)
Strand=Plus/Plus
Query 113 AGATAGAGATATGTCTTGTTCATCTTCTTCCGGATCAGAAGGAGAAGAAGAGGGTTTCGA 172
||| ||||||||||| |||||||| || || |||||||| | ||| || |||||||||||
Sbjct 131 AGACAGAGATATGTCGTGTTCATCCTCATCTGGATCAGATGAAGACGATGAGGGTTTCGA 190
Query 173 TGCTTACCGTAAAGGTGGTTATCACGCCGTCAGGATCGGCGATCC-TTTTTCCGGTGGTC 231
|||||||||||||||||| ||||||||||| || ||||| || || ||| ||||||| |
Sbjct 191 TGCTTACCGTAAAGGTGGATATCACGCCGTTAGAATCGGAGA-CCAGTTTGCCGGTGGCC 249
Query 232 GTTACATCGCTCAGAGAAAGCTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCCTACG 291
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 250 GTTACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATG 309
Query 292 ATACGCTCACCTCTAA-TGTTTTGCTTTGTATG-TTTTTATG-TCTCTTTGCACAACAAT 348
|||| | ||||||||| | | |||||||| | | || | | | |||| |||||
Sbjct 310 ATACTCGCACCTCTAATTATGTTGCTTTG-AAGATTCAGAAGAGCGCTTT-----ACAAT 363
Query 349 TTGCTCAAGCTGCACTTCACGAAATCGAATTTCTTTC-AGCTGCTGCTGATGGGGAT-CT 406
||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||
Sbjct 364 TTGCTCAAGCTGCACTTCACGAAATCGAACTTC-TTCAAGCTGCTGCTGATGGGGATCCT 422
Query 407 CGACAAGACGAAATGTGTTGTTCGTCTTATTGACCATTTCAAGCATAG-TGGTCCAAATG 465
|| || || ||||||||||||||||||||||| | |||||||| | ||||| ||||
Sbjct 423 GGA-AATACCAAATGTGTTGTTCGTCTTATTGATGACTTCAAGCA-CGCAGGTCCCAATG 480
Query 466 GGCAGCATTTATGCATGGTGCTTGAGTTTCTCGGCGATAGCTTGCTCCGTTTAATCAGAT 525
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||
Sbjct 481 GGCAGCATTTATGCATGGTGCTTGAGTTTCTTGGCGATAGCTTGCTGCGTTTGATCAAAT 540
Query 526 ACAACCAG-TACAAAGGTCTGAAACTGAATAAAGTCCGGGAGATTTGCAGATGTATACTG 584
|||||| | || ||||| || | ||| |||||| |||||||| |||| ||||||||||
Sbjct 541 ACAACC-GTTATAAAGGGATGGAGTTGAGTAAAGTGCGGGAGATATGCAAATGTATACTG 599
Query 585 ACTGGTTTAGATTATTTGCACCGTGAGCTCGGTATGATTCACTCCGACTTAAAACCTGAA 644
|||||| ||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 600 ACTGGTCTAGATTATTTGCACCGTGAACTTGGTATGATTCACTCCGACTTAAAACCCGAA 659
Query 645 AACATTCTTCTTTGTTCCACCATTGACCCTGCCAAAGATCCCGTTAGATCTGGACTCACC 704
||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||| ||
Sbjct 660 AACATTCTTCTTTGTTCCACCATTGACCCTGCCAAGGATCCCATCAGATCCGGACTAACA 719
Query 705 CCACTATTAGAAAAACCAGAGGGAAACGCAAA-CGGTGGCGCATCAACAATGAATCTGAT 763
||| || ||||||| || ||||| ||| |||| |||| | ||||||||||||||||||
Sbjct 720 CCAATACTAGAAAAGCCTGAGGGTAAC-CAAAACGGTA-C--ATCAACAATGAATCTGAT 775
Query 764 TGAGAAGAAACTAAAGAGAAGAGCGAAAAGAG-CGGTTGCTAAAATATCAGAAAGAAGAG 822
||||||||| | ||||| |||||||||| || ||| |||||||||||||| ||||||||
Sbjct 776 TGAGAAGAAGTTGAAGAGGAGAGCGAAAA-AGGCGGCTGCTAAAATATCAGGAAGAAGAG 834
Query 823 TCTCAATGGTTACAGGTG-AAGAAGCATCATCGA-AAACGGA-AA-A-AAGTCTAGATGG 877
| || || || | ||| ||| | | || ||| ||| | | || | || | | |||||
Sbjct 835 TTTCGATAGT-A--GGTTTAAGT-GAAACACCGACAAA-GAACAAGAGAAATTTGGATGG 889
Query 878 GATTGATATGAGATGCAAAGTGGTTGACTTTGGTAACGCTTGTTGGGCTGATAA-ACAGT 936
||||||||||||||||||||| || |||||||| |||| |||||||||||||| | | |
Sbjct 890 GATTGATATGAGATGCAAAGTTGTCGACTTTGGGAACGGGTGTTGGGCTGATAAGAAA-T 948
Query 937 TTGCTGAAGAGATACAAACAAGACAGTATC-GAGCTCCTGAAGTAATACTAAAGTCAGGA 995
|||| ||||| ||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 949 TTGCAGAAGAAATACAAACAAGACAGTA-CAGAGCTCCTGAAGTAATACTTCAGTCAGGT 1007
Query 996 TACTCTTTCTCTGTTGATATGTGGTCTTTTG-GTTGTACGGCTTTCGAGCTTG-TCACAG 1053
||||||| ||||||||||||||||||||| | || |||| ||||||||||||| | ||||
Sbjct 1008 TACTCTTACTCTGTTGATATGTGGTCTTTCGCGT-GTACTGCTTTCGAGCTTGCT-ACAG 1065
Query 1054 GAGATATGCTATTT-GCACCTAAAGATGGAAATGGTTATGGGGAAGACGAGGATCACCTT 1112
| |||||||| ||| || || ||||| || |||||||| || ||||||||||| ||||||
Sbjct 1066 GTGATATGCT-TTTCGCTCCAAAAGAGGGTAATGGTTACGGAGAAGACGAGGACCACCTT 1124
Query 1113 GCTCTTATGATGGAACTCCTAGGAAAGATGCCTCGAAAGATTGCCATTGGAGGGGCGAAA 1172
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1125 GCTCTTATGATGGAACTCTTAGGAAAAATGCCTCGAAAGATTGCCATTGGAGGTGCGAGA 1184
Query 1173 TCGAAAG-ACTACTTTGACAGACACGGGGACTTAAAGAGAATCCG-ACGGTTGAAATATT 1230
|| |||| | ||||||||||||||||| ||||| ||||| ||||| | | || ||||| |
Sbjct 1185 TC-AAAGGATTACTTTGACAGACACGGCGACTTGAAGAGGATCCGGA-GATTAAAATACT 1242
Query 1231 GGCCACTTGATCGCTTGCTGATTGATAAATATAAGCTTCCGGAAGCAGAAGCAAAGGAGT 1290
||||||| || || || |||||||||||||| |||||||| ||||||||| || ||| |
Sbjct 1243 GGCCACTCGACCGTTTACTGATTGATAAATACAAGCTTCCAGAAGCAGAATCACGGGAAT 1302
Query 1291 TTGCTGAGTTTCTGACT-CC-GATTCTTGAGTTTGCGCCGGAGAAACGACCAACTGCTCA 1348
|||| || ||||| || || |||| | || ||||| || ||||||||||||||||||||
Sbjct 1303 TTGCGGAATTTCT--CTGCCCGATTATGGATTTTGCACCTGAGAAACGACCAACTGCTCA 1360
Query 1349 ACAGTG-CTTGGATCATCCATGGATGAATGTAACAACACAGAACGATGCAGA--AAATGT 1405
||| || || | | ||||||||| ||||| | | ||||||||| ||| ||| ||||
Sbjct 1361 ACAATGTCT-GCAACATCCATGGTTGAATCTCAGGACACAGAACAATGAAGATCAAAT-- 1417
Query 1406 AGATGACCAAATGAACAACTTGCATATCAAAGG 1438
||| | || |||| ||| |||| ||||||||
Sbjct 1418 AGAAGGTCAGATGAGTAACATGCAGATCAAAGG 1450
> Ahg343373 jgi|Araly1|343373|fgenesh1_pg.C_scaffold_3003136
Length=3171
Score = 1245 bits (674), Expect = 0.0
Identities = 1134/1349 (84%), Gaps = 60/1349 (4%)
Strand=Plus/Plus
Query 117 AGAGATATGTCTTGTTCATCTTCTTCCGGATCAGAAGGAGAAGAAGAGGGTTTCGATGCT 176
||||||||||| |||||||| || || |||||||| | ||| || |||||||||||||||
Sbjct 1843 AGAGATATGTCGTGTTCATCCTCATCTGGATCAGATGAAGACGATGAGGGTTTCGATGCT 1902
Query 177 TACCGTAAAGGTGGTTATCACGCCGTCAGGATCGGCGATCC-TTTTTCCGGTGGTCGTTA 235
|||||||||||||| ||||||||||| || ||||| || || ||| ||||||| |||||
Sbjct 1903 TACCGTAAAGGTGGATATCACGCCGTTAGAATCGGAGA-CCAGTTTGCCGGTGGCCGTTA 1961
Query 236 CATCGCTCAGAGAAAGCTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCCTACGATAC 295
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1962 CATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATAC 2021
Query 296 GCTCACCTCTAA-TGTTTTGCTTTGTATG-TTTTTATG-TCTCTTTGCACAACAATTTGC 352
| ||||||||| | | |||||||| | | || | | | |||| |||||||||
Sbjct 2022 TCGCACCTCTAATTATGTTGCTTTG-AAGATTCAGAAGAGCGCTTT-----ACAATTTGC 2075
Query 353 TCAAGCTGCACTTCACGAAATCGAATTTCTTTC-AGCTGCTGCTGATGGGGAT-CTCGAC 410
||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| || ||
Sbjct 2076 TCAAGCTGCACTTCACGAAATCGAACTTC-TTCAAGCTGCTGCTGATGGGGATCCTGGA- 2133
Query 411 AAGACGAAATGTGTTGTTCGTCTTATTGACCATTTCAAGCATAG-TGGTCCAAATGGGCA 469
|| || ||||||||||||||||||||||| | |||||||| | ||||| ||||||||
Sbjct 2134 AATACCAAATGTGTTGTTCGTCTTATTGATGACTTCAAGCA-CGCAGGTCCCAATGGGCA 2192
Query 470 GCATTTATGCATGGTGCTTGAGTTTCTCGGCGATAGCTTGCTCCGTTTAATCAGATACAA 529
||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||
Sbjct 2193 GCATTTATGCATGGTGCTTGAGTTTCTTGGCGATAGCTTGCTGCGTTTGATCAAATACAA 2252
Query 530 CCAG-TACAAAGGTCTGAAACTGAATAAAGTCCGGGAGATTTGCAGATGTATACTGACTG 588
|| | || ||||| || | ||| |||||| |||||||| |||| ||||||||||||||
Sbjct 2253 CC-GTTATAAAGGGATGGAGTTGAGTAAAGTGCGGGAGATATGCAAATGTATACTGACTG 2311
Query 589 GTTTAGATTATTTGCACCGTGAGCTCGGTATGATTCACTCCGACTTAAAACCTGAAAACA 648
|| ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 2312 GTCTAGATTATTTGCACCGTGAACTTGGTATGATTCACTCCGACTTAAAACCCGAAAACA 2371
Query 649 TTCTTCTTTGTTCCACCATTGACCCTGCCAAAGATCCCGTTAGATCTGGACTCACCCCAC 708
||||||||||||||||||||||||||||||| |||||| | ||||| ||||| || |||
Sbjct 2372 TTCTTCTTTGTTCCACCATTGACCCTGCCAAGGATCCCATCAGATCCGGACTAACACCAA 2431
Query 709 TATTAGAAAAACCAGAGGGAAACGCAAA-CGGTGGCGCATCAACAATGAATCTGATTGAG 767
|| ||||||| || ||||| ||| |||| |||| | ||||||||||||||||||||||
Sbjct 2432 TACTAGAAAAGCCTGAGGGTAAC-CAAAACGGTA-C--ATCAACAATGAATCTGATTGAG 2487
Query 768 AAGAAACTAAAGAGAAGAGCGAAAAGAG-CGGTTGCTAAAATATCAGAAAGAAGAGTCTC 826
||||| | ||||| |||||||||| || ||| |||||||||||||| ||||||||| ||
Sbjct 2488 AAGAAGTTGAAGAGGAGAGCGAAAA-AGGCGGCTGCTAAAATATCAGGAAGAAGAGTTTC 2546
Query 827 AATGGTTACAGGTG-AAGAAGCATCATCGA-AAACGGA-AA-A-AAGTCTAGATGGGATT 881
|| || | ||| ||| | | || ||| ||| | | || | || | | |||||||||
Sbjct 2547 GATAGT-A--GGTTTAAGT-GAAACACCGACAAA-GAACAAGAGAAATTTGGATGGGATT 2601
Query 882 GATATGAGATGCAAAGTGGTTGACTTTGGTAACGCTTGTTGGGCTGATAA-ACAGTTTGC 940
||||||||||||||||| || |||||||| |||| |||||||||||||| | | |||||
Sbjct 2602 GATATGAGATGCAAAGTTGTCGACTTTGGGAACGGGTGTTGGGCTGATAAGAAA-TTTGC 2660
Query 941 TGAAGAGATACAAACAAGACAGTATC-GAGCTCCTGAAGTAATACTAAAGTCAGGATACT 999
||||| ||||||||||||||||| | ||||||||||||||||||| ||||||| ||||
Sbjct 2661 AGAAGAAATACAAACAAGACAGTA-CAGAGCTCCTGAAGTAATACTTCAGTCAGGTTACT 2719
Query 1000 CTTTCTCTGTTGATATGTGGTCTTTTG-GTTGTACGGCTTTCGAGCTTG-TCACAGGAGA 1057
||| ||||||||||||||||||||| | || |||| ||||||||||||| | ||||| ||
Sbjct 2720 CTTACTCTGTTGATATGTGGTCTTTCGCGT-GTACTGCTTTCGAGCTTGCT-ACAGGTGA 2777
Query 1058 TATGCTATTT-GCACCTAAAGATGGAAATGGTTATGGGGAAGACGAGGATCACCTTGCTC 1116
|||||| ||| || || ||||| || |||||||| || ||||||||||| ||||||||||
Sbjct 2778 TATGCT-TTTCGCTCCAAAAGAGGGTAATGGTTACGGAGAAGACGAGGACCACCTTGCTC 2836
Query 1117 TTATGATGGAACTCCTAGGAAAGATGCCTCGAAAGATTGCCATTGGAGGGGCGAAATCGA 1176
|||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||| |
Sbjct 2837 TTATGATGGAACTCTTAGGAAAAATGCCTCGAAAGATTGCCATTGGAGGTGCGAGATC-A 2895
Query 1177 AAG-ACTACTTTGACAGACACGGGGACTTAAAGAGAATCCG-ACGGTTGAAATATTGGCC 1234
||| | ||||||||||||||||| ||||| ||||| ||||| | | || ||||| |||||
Sbjct 2896 AAGGATTACTTTGACAGACACGGCGACTTGAAGAGGATCCGGA-GATTAAAATACTGGCC 2954
Query 1235 ACTTGATCGCTTGCTGATTGATAAATATAAGCTTCCGGAAGCAGAAGCAAAGGAGTTTGC 1294
||| || || || |||||||||||||| |||||||| ||||||||| || ||| |||||
Sbjct 2955 ACTCGACCGTTTACTGATTGATAAATACAAGCTTCCAGAAGCAGAATCACGGGAATTTGC 3014
Query 1295 TGAGTTTCTGACT-CC-GATTCTTGAGTTTGCGCCGGAGAAACGACCAACTGCTCAACAG 1352
|| ||||| || || |||| | || ||||| || |||||||||||||||||||||||
Sbjct 3015 GGAATTTCT--CTGCCCGATTATGGATTTTGCACCTGAGAAACGACCAACTGCTCAACAA 3072
Query 1353 TG-CTTGGATCATCCATGGATGAATGTAACAACACAGAACGATGCAGA--AAATGTAGAT 1409
|| || | | ||||||||| ||||| | | ||||||||| ||| ||| |||| |||
Sbjct 3073 TGTCT-GCAACATCCATGGTTGAATCTCAGGACACAGAACAATGAAGATCAAAT--AGAA 3129
Query 1410 GACCAAATGAACAACTTGCATATCAAAGG 1438
| || |||| ||| |||| ||||||||
Sbjct 3130 GGTCAGATGAGTAACATGCAGATCAAAGG 3158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5