BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35530.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491093 jgi|Araly1|491093|fgenesh2_kg.7__526__AT4G35530.1 1524 0.0
Ahg938812 jgi|Araly1|938812|scaffold_503003.1 279 2e-74
Ahg940479 jgi|Araly1|940479|scaffold_601023.1 126 3e-28
> Ahg491093 jgi|Araly1|491093|fgenesh2_kg.7__526__AT4G35530.1
Length=1043
Score = 1524 bits (825), Expect = 0.0
Identities = 978/1051 (93%), Gaps = 14/1051 (1%)
Strand=Plus/Plus
Query 12 TCTCTTTACCGGTAAGAGAAGCCGGTTTCAGATTTGATCAATTCGAAGAATTGTGGCTTT 71
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1 TCTCTTCACCGGTAAGAGAAGCCGGTTTCAGATTTGATCTATTCGAAGAATTGCGGCTTT 60
Query 72 CGTTCGTTGGG-TGAATCCTTGCTTCGTCCTTTTTGATAGATTGCTACTGTGTTTTCGAG 130
|| |||| ||| | |||||||||||| |||| ||||||||||| |||||||||||| |||
Sbjct 61 CGCTCGTCGGGAT-AATCCTTGCTTCTTCCTGTTTGATAGATTTCTACTGTGTTTTAGAG 119
Query 131 GA-AGTTGTGTGGAG-ATAGTTAGAGAGATTTATGAGATTTCAA-GAGGGGTTATTATAA 187
|| | |||||||| | |||||| | |||||||||| |||||||| | |||||| || |||
Sbjct 120 GACA-TTGTGTGGGGAATAGTTGGCGAGATTTATGGGATTTCAACG-GGGGTTTTTCTAA 177
Query 188 CGCACGCATGGTGTTCGACGGAAAGCCGCAGAGAAGTTTTGTTGCTATCCGATTTGACTG 247
|||||| || ||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 178 TGCACGCGTGTTGTTCGACGGAAAGCCGCAGAGAAGTTTTGTTGCTGTCTGATTTGGCTG 237
Query 248 AGACTC-AAAGTTTGAAAATTGTTACTTGGGTATTGAGAAAGCTAACCTTGGGCAGGTTC 306
|||||| ||||||||||||||||| ||||||||||||| |||||| ||| ||||||||
Sbjct 238 AGACTCAAAAGTTTGAAAATTGTTGCTTGGGTATTGAG-AAGCTAGTCTTATGCAGGTTC 296
Query 307 GTATATGAGTTGGGAGTAAAACGACGGTGATACATTTGACTGTTTTTCAACTAAACTAGC 366
|||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||
Sbjct 297 CTATATGAGTT-GGAGT-AAACGACGGTGATACA-TTGAGTGTTTTTCAACTAAACTAGC 353
Query 367 TTT-GAAATGGTGAGCTTGTCTGTTTCGAATAAGAGATACACTTACATACACGAAAGTGG 425
||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 354 TTTCG-AATGGTGAGCTCGTCTGTTTCAAATAAGAGATACACTTACATACACGAAAGTGA 412
Query 426 AAGTAAGTCAACTAGAGAAGCCATTGATATTCACCATGTGATTATCAACGGAAGCAGCGG 485
|||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 413 AAGTAACTCAACTAGAGAAGCCATTGACATTCATCATGTGATTATCAACGGAGGCAGAGC 472
Query 486 AACTGGTTATGCCCGTCGTTGGGGGCTTGGTTTCTTCCTTGTGTTTCTGGCGAGTTCTAT 545
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 473 AACTGGTTATGCCCGTCGTAGGGGGATTGGTTTCTTCCTTGTGCTTCTGGCGAGTTCTAT 532
Query 546 GTACTTTTTGCTTGGAAAGGACAATCCAGCTAGAACTCTTTCTTGGGGCTGCCTTTTAAG 605
|||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 533 CTACTTTTTTCTTGGAAAGGAAAATCCAGTTAGAACTCTTTCTTGGGGCTGCCTTTTAAG 592
Query 606 TGGTTTCTTGGTTATGCTACATAGTCGCAAGTTCGTCAAGAAAGAATCTGTGATAATCTT 665
||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 593 TGGTTTCTTAGTTATGCTACAAAGTCGCAAGTTCGTCAACAAAGAATCTGTGATAATCAT 652
Query 666 GCCAACCTTCGGGATCCAACTTGAAACTCAATATTTAAGTGGAAAAACTGTCTCCAGGTT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GCCAACCTTCGGGATCCAACTTGAAACTCAATATTTAAGTGGAAAAACTGTCTCCAGGTT 712
Query 726 TATCCCTATTGACAAGATTTTGAAGCCTGTGTTGGTCGAATGTGTCACTCCCATTACGTG 785
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 713 TATCCCTATTGGCAAGATTTTGAAGCCTGTGTTGGTCGAATGTGTCACTCCCATTACATG 772
Query 786 TTACTGGAGTCTCTCTTTATTTCTTCGTGGTGAAGAACAACTTACATTGGTGTTTAAGGA 845
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 773 CTACTGGAGTCTCTCTTTATTTCTGCGTGGCGAAGAACAACTTACATTGGTGTTTAAGGA 832
Query 846 ACTGCGTCCTCCATTGAAGATGTTGGTTCCCATTTGGAAAGCATTGTGTGCTGCTATCGG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ACTGCGTCCTCCATTGAAGATGTTGGTTCCCATTTGGAAAGCATTGTGTGCTGCTATCGG 892
Query 906 TACAGACCACCAAAGTGAAACGATAGCTGAAGAAGAACATGATGTATCTAGTTAACTGCA 965
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 893 CACAGACCACCAAAGTGAAACGATAGCTGAAGAAGAATATAATGTATCTAGTTAACTGAA 952
Query 966 GTTGTGATTAGAGAACTTGTAGATTTGTTACTTGTTGTTGGCAGTTTTGTTTGGAAGATG 1025
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 953 GTTGTGATTAGAGAACTTGTAGATTTGTTGCTTGCTGTTGGCAGTTTTGTTTGGAAGATG 1012
Query 1026 ATCACACAATATGTTCTGTAATGGGAGAATT 1056
|||||||||||||||||||||||||||||||
Sbjct 1013 ATCACACAATATGTTCTGTAATGGGAGAATT 1043
> Ahg938812 jgi|Araly1|938812|scaffold_503003.1
Length=563
Score = 279 bits (151), Expect = 2e-74
Identities = 171/181 (94%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 421 AGTGGAAGTAAGTCAACTAGAGAAGCCATTGATATTCACCATGTGATTATCAACGGAAGC 480
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 235 AGTGAAAGTAAGTCAACTAGAGAAGCCATTGACATTCATCATGTGATTATCAACGGAGGC 294
Query 481 AGCGGAACTGGTTATGCCCGTCGTTGGGGGCTTGGTTTCTTCCTTGTGTTTCTGGCGAGT 540
|| | ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 295 AGAGCAACTGGTTATGCCCGTCGTAGGGGGATTGGTTTCTTCCTTGTGCTTCTGGCGAGT 354
Query 541 TCTATGTACTTTTTGCTTGGAAAGGACAATCCAGCTAGAACTCTTTCTTGGGGCTGCCTT 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCTATGTACTTTTTTCTTGGAAAGGACAATCCAGCTAGAACTCTTTCTTGGGGCTGCCTT 414
Query 601 T 601
|
Sbjct 415 T 415
> Ahg940479 jgi|Araly1|940479|scaffold_601023.1
Length=391
Score = 126 bits (68), Expect = 3e-28
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 573 AGCTAGAACTCTTTCTTGGGGCTGCCTTTTAAGTGGTTTCTTGGTTATGCTACATAGTCG 632
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 227 AGCTAGAACTCTTTCTTGGGGCTGCCTTTTAAGTGGTTTCTTAGTTATGCTACAAAGTCG 286
Query 633 CAAGTTCGTCAAGAAAG 649
|||||||||||| ||||
Sbjct 287 CAAGTTCGTCAACAAAG 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5