BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35540.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491092 jgi|Araly1|491092|fgenesh2_kg.7__525__AT4G35540.1 2379 0.0
> Ahg491092 jgi|Araly1|491092|fgenesh2_kg.7__525__AT4G35540.1
Length=1704
Score = 2379 bits (1288), Expect = 0.0
Identities = 1566/1699 (92%), Gaps = 24/1699 (1%)
Strand=Plus/Plus
Query 16 TCTCGATTCGCCGGCGATCCGAATCTCA---TTCTTCTGCTTGTC---GGaaaaaaaaaC 69
|||||||||||||||||||||||| ||| ||||||||||| || |||||||||||
Sbjct 1 TCTCGATTCGCCGGCGATCCGAATTTCATTCTTCTTCTGCTTATCGGGGGAAAAAAAAAA 60
Query 70 CCGTAATTTAAAGTGTGAAGCTTTCGGTTTGAATCATGCGTTGCAAGAGATGCAATGGAA 129
|| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 61 CC-TAATTTAAAGTTTGAAGCTTTAGGTTTGAATCATGCGTTGCAAGGGATGCAATAGAA 119
Query 130 GCAACTTTGAACGCGACGAAGACACGGGGAATTCGTATTGCGGTGGATGTGGGACATTAC 189
||||||||| ||||||||||| ||| |||||| || ||||||||||||||||||||||||
Sbjct 120 GCAACTTTGTACGCGACGAAGTCACAGGGAATACGCATTGCGGTGGATGTGGGACATTAC 179
Query 190 GAGAGTATGATAATTATGAGGCACAACTTGGCGGCATAAGAGGACCTCAAGGTACATATA 249
||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||| ||
Sbjct 180 GAGAGTACGATAATTATGAGGCACACCTTGGCCCCATAGGAGGACCTCAAGGTACATTTA 239
Query 250 TACGAGTAGGCACCATTGGTAGAGGCTCTGTTCTTGATTATAAAGACAAGAAGATCTATG 309
||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 240 TACGAGTAGGCACCATTGGTATAGGCTCTGTTCTTGCTTATAAAGAGAAGAAGATCTATG 299
Query 310 AAGCCAACAATTTAATTGAGGAGACAACAGAAAGATTGA-ATCTTGGTAATAAAACTGAA 368
||||||||||||| ||||||| | ||||| ||||| | |||||||| |||||||||||
Sbjct 300 AAGCCAACAATTTGATTGAGGCTATTACAGAGAGATT-AGATCTTGGTTATAAAACTGAA 358
Query 369 GTGATTAAGAGTATGA-TTAGTAAGCTTACTGATGGGGAATTTGGACAAGGTGAGTGGTT 427
| |||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||
Sbjct 359 GCGATTAAGAGTATGATTTA-TTATATTACTGATGGGGAATTTGGACAAGGTGAGTGGTT 417
Query 428 CCCTATTTTGATTGGAGCTTGTTGTTATGCTGTGGTAAGAGAAGAAGGGAAAGGTGTTTT 487
||| ||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 418 CCCGATTTTGATTGGGGCGTGTTGTTATGCTGTGGTGAGAAAAGAAGGGAAAGGTGTTTT 477
Query 488 GTCTATGGAAGAGGTTGCTTATGAAGTTGGATGTGATTTGCATCAGTTAGGGCCTATGAT 547
||||||||||||| |||||| | |||||||||||||||||||||||||||||||| || |
Sbjct 478 GTCTATGGAAGAGATTGCTTGTCAAGTTGGATGTGATTTGCATCAGTTAGGGCCTGTGGT 537
Query 548 TAAGCGTGTTGTGGATCATCTAGATTTGGAATTGCGAGAGTTTGATCTTGTGGGTTTGTT 607
||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||
Sbjct 538 TAAGCGTGTTGTGGATCATTTAGACTTGGAATTTCGAGAGATTGATCTTGTGGGTTTGTT 597
Query 608 TACCAAGACGGTTACTAATTCACCGAGATTGACTGATGTTGATAGGGATAAGAAGGAGAA 667
||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 598 TACCAAGACGGCGACTAATTCACCGAGATTGACTGATGTTGGTAGGGAGAAAAAGGAGAG 657
Query 668 GATAATAAAGCAAGGGACTTTCCTGATGAATTGTGCGTTGAAATGGTTTTTGTCGACGGG 727
||||| ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 658 GATAACAAAGCAAGGAACTTTTCTGATGAATTGTGCATTGAAGTGGTTTTTGTCGACGGG 717
Query 728 GAGGAGACCAATGCCTTTGGTTGTGGCTGTTTTGGCGTTTGTTGTTCAAGTGAATGGTGT 787
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 GAGGAGACCAATGCCTTTGGTTGTGGCTGTTTTGGCGTTTGTTGCTCAAGTGAATGGTGT 777
Query 788 GAAGGTAAAGATTGATGATTTGGCGAAAGATGCTAGTGTTTCGTTGACTACTTGTAAAAC 847
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 778 GAAGGTAAAGATTGATGATTTGGCGAAAGATGCTCGTGTTTCGTTGACTACTTGTAAGAC 837
Query 848 GCGGTATAAAGAGTTATCTGAGAAGCTTGTGAAGGTTGCTGAAGAGGTGGGTTTGCCTTG 907
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAGGTATAAAGAGTTATCTGAGAAGCTTGTGAAGGTTGCTGAAGAGGTGGGTTTGCCTTG 897
Query 908 GGCGAAAGATGTTACTGTGAAGAATGTTTTGAAACATTCAGGAACTTTGTTTGCTTTAAT 967
||| |||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 898 GGCCAAAGATGTAACTGTGAAGAATGTTGTGAAACATTCAGGGACTTTGTTTGGTTTAAT 957
Query 968 GGAAGCCAAGTCCATGAAAAAGAGAAAACAAGGGACTGGGAAAGAATTAGTTAGAACTGA 1027
|||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 958 GGAAGCCAAGTCCAGGAAAAAGAGAAAACTAGGGACAGGGAATGAATTAGTTAGAACTGA 1017
Query 1028 TGGATTTTGTGTGGAGGATTTAGTGATGGACTGCCTAAGCAAAGAATCTATGTATTGTTA 1087
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 TGGATTTTGTGTGGAGGATATAGTGAGGGACTGCCTAAGCAAAGAATCTATGTATTGTTA 1077
Query 1088 TGATGATG---ATGCT------CGTCAAGATACTATGTCTCGGTATTTTGATGTAGAAGG 1138
|||||||| ||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 1078 TGATGATGGTGATGATGATGATCGTCAAGATACTATGTCTCGGTATTTTGATGTAGGAGG 1137
Query 1139 TGAACGTCAGCTTAGTTTATGTAACTATGATGATAATATATCGGAGAATCAGTTGTCTAC 1198
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 1138 TGAACGTCAGCTTAGTTTATGTAACAAGGATGATAATATATCGGAGAAACAGTTGTCTAC 1197
Query 1199 AAAGTATAATGAATTTGAGGATCGAGTTTGTGGTGGGACTCTTGCGAAAAGAAGTCAGGG 1258
|||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1198 GAAGTATAATGAATTCGTGGATCGAGTTCGTGGTGGGGCTCTTGCGAAAAGAAGTCAGGG 1257
Query 1259 AAGTAGTCAGAGTATGTGGCAAAGGAGATCTGTTTTTG-GAATGGTGTCAACTGAAAATT 1317
|| || | |||||||||||||||||||||| ||||| | || || | |||| |||| |||
Sbjct 1258 AAATAATAAGAGTATGTGGCAAAGGAGATCAGTTTTCGAGA-TGTTTTCAAGTGAATATT 1316
Query 1318 GGTGGAAAGGGAAATCGGAATTGAGTAAAAGGCTTTTGCTCAAAGACTTGTTGGAGAAAG 1377
|||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 1317 GGTGGAAAGGCAAATCGGAATTGAGTCGAAGGCTTTTGCTCAAGGATTTGTTGGAGAAAG 1376
Query 1378 ATGTAGGGCTTGAAGCTTTGCCTCCTTCTTACATAAAGGGTTGCGTTGCAGTTGAAAGAC 1437
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATGTAGGACTTGATGCTTTGCCTCCTTCTTACATAAAGGGTTGCGTTGCAGTTGAAAGAC 1436
Query 1438 GAAGAGAAAAGATTAAGGCAGCTAAGTTGCGGATTAATG-CAATACAACATCCTTCTGAC 1496
|||||||||||||||||||||| ||||| |||||||| | | |||||||||||||||| |
Sbjct 1437 GAAGAGAAAAGATTAAGGCAGCGAAGTTACGGATTAA-GACCATACAACATCCTTCTGGC 1495
Query 1497 AATGTTAGTGAAGGTGCGTTGTCTTTGGAGCTTGAACATAGCAAGAAGAAAAGGAAGAAA 1556
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 ATTGTTAGTGAAGGTGCGTTGTCTTTGGAGCTTGAACATAGCAAGAAGAAAAGGAAGAAA 1555
Query 1557 GGATCTGAAATTGATTGGGAGGATTTGGTTATACAGACTCTGGTCTTACACAATGTGAAT 1616
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1556 GGATCTGAAATTGATTGGGAGGATTTGGTTATCCAGACTCTGGTCTTACACAATGTGAAT 1615
Query 1617 GAGGAAGAAATAGAGAAAGGCCATTACAAAACTTTGTTAGACTTGCATGTTTTCAACTCT 1676
||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 1616 GAGGAAGAAATCGAGAAAGGCCATTACAAAACTTTGGTAGAGTTGCATGTTTTCGACTCC 1675
Query 1677 GGAGAGGTTTGAATTGAAA 1695
|||||||||||||||||||
Sbjct 1676 GGAGAGGTTTGAATTGAAA 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5