BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35550.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944335 jgi|Araly1|944335|scaffold_700564.1 1345 0.0
> Ahg944335 jgi|Araly1|944335|scaffold_700564.1
Length=849
Score = 1345 bits (728), Expect = 0.0
Identities = 815/856 (95%), Gaps = 10/856 (1%)
Strand=Plus/Plus
Query 112 TCTTCTGAGCGAAATTCTGACAAAAGAGATGATGGAATGGGATAATCAGCTACAACCCAA 171
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1 TCTTCTGAGCGAAATTCTGACAAAAGAGATGATGGAATGGGATAATCAGCAACAGCCCAA 60
Query 172 TAACCATCACTCTTCTAATCTTCAAGGGATCGACGTTAATGGCGGCTCCGGCGCCGGAGG 231
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TAACCATCTCTCTTCTAATCTTCAAGGGATCGATGTTAATGGCGGCTCCGGCGCCGGAGG 120
Query 232 AGGAATGTACGTGAAGGTGATGACCGATGAGCAGTATGAAACTCTCAGGAAACAGATTGC 291
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 121 AGGAATGTACGTGAAGGTGATGACCGATGAGCAGTATGAAACTTTGAGGAAACAGATTGC 180
Query 292 TATTTACGGCACCATTTGTGAGCGTCTTGTTGAGATGCATAAAACTCTCACTGCTCAACA 351
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TATTTACGGCACCATTTGTGAGCGTCTTGTTGAGATGCACAAAACTCTCACTGCTCAACA 240
Query 352 AGATCTTGCAGGAGGGAGAATGGGAGGACTATATGCAGACCCAATGATGTCATCTTTAGG 411
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 241 AGATCTTGCAGGAGGGAGATTGGGAGGTCTATATGCAGACCCAATGATGTCATCTATAGG 300
Query 412 TCATAAGATGACAGCTAGACAGAGGTGGACTCCTACGCCAGTCCAGCTTCAGATTCTGGA 471
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCACAAGATGACAGCTAGACAGAGGTGGACTCCTACGCCAGTCCAGCTTCAGATTCTGGA 360
Query 472 ACGTATATTCGATCAAGGCACGGGAACACCGAGCAAGCAGAAGATCAAAGACATAACAGA 531
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GCGTATATTCGACCAAGGCACTGGAACACCGAGCAAGCAGAAGATCAAAGAGATAACAGA 420
Query 532 AGAGCTGAGCCAACACGGCCAGATTGCTGAACAAAATGTCTATAACTGGTTCCAGAACCG 591
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AGAGCTGAGCCAACACGGCGAGATTGCTGAACAAAATGTCTACAACTGGTTCCAGAACCG 480
Query 592 ACGTGCTCGATCCAAGAGGAAGCAGCATGGTGGAGGTTCTTCTGGAAATAATAATGGTGA 651
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 481 ACGTGCTCGATCCAAGAGGAAGCAGCAGGGTGGAGGTTCTTCTGGAAACAATAATGGTGA 540
Query 652 GTCTGAGGTAGAGACTGAAGTTGAAGCATTGAATGAGAAGAGAGTAGTGAGGCCAGAGAG 711
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 541 GTCTGAGGTAGAGACTGAAGTTGAGGCATTGAATGAGAAGAGAGTA---AGGCCAGAGAG 597
Query 712 TCTTCTTGGTCTTCCAGATGGAAATAGCAACAATAATGGGTTAGGGACAACAACAGCAAC 771
|||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||
Sbjct 598 TCTTCTTGGTCTTCCAGATGGAAATAACAACAATAATGTGTTAGGGTCAACAACAACAAC 657
Query 772 AACTACTGCTCCTAGGCCTGAAGATCTTTGCTTTCAGAGCCCTGAGATTAGCTCAGACCT 831
||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 658 AACTACT-C-C-TAGGCCTGAAGATCTTTGCTTTCAGAGCCCTGAGATGAGCTCAGACCT 714
Query 832 TCACTTGCTAGATGTTCTATCAAACCCAAGGGATGAGCATCTTGTTGGAAAGATGGGACT 891
||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TCACTTGTTAGGTGTTCTAGCAAACCCAAGGGATGAGCATCTTGTTGGAAAGATGGGACT 774
Query 892 GGCGGAAAGTTACAACCTTTATGATCATGTTGAAGATTATGGCATGTCAGGCTGATTGAA 951
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 775 GTCTGAAAGTTACAACATTTATGATCATGTTGAAGATTATGGCATGTCAGGCTGATT-AA 833
Query 952 TACAA---GCTGAGGA 964
||||| ||||||||
Sbjct 834 TACAACAAGCTGAGGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5