BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G35570.1

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888512 jgi|Araly1|888512|Al_scaffold_0007_498                     560    4e-159


> Ahg888512 jgi|Araly1|888512|Al_scaffold_0007_498
Length=378

 Score =  560 bits (303),  Expect = 4e-159
 Identities = 356/381 (93%), Gaps = 6/381 (2%)
 Strand=Plus/Plus

Query  79   ATGAAAGATAACCAAACGGAAGTTGAATCGAGGAGCACTGATGATAGATTGAAAGTTAGA  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAGATAACCAAACGGAAGTTGAATCGAGGAGCACTGATGATAGATTGAAAGTTAGA  60

Query  139  GGGAACAAAGTTGGAAAGAAAACAAAGGATCCAAACAGGCCTAAGAAACCACCAAGTCCT  198
            || || |||| |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct  61   GGTAATAAAGGTGGAAAGAAAACAAAGGATCCAAACAAGCCTAAGAAACCTCCAAGTCCT  120

Query  199  TTCTTCGTCTTCCTGGACGATTTCCGAAAGGAGTTTAATCTGGCTAACCCTGACAACAAA  258
            |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  121  TTCTTCGTCTTCCTGGACGATTTCCGAAGGGAGTTTAATCTAGCTAACCCTGACAACAAA  180

Query  259  TCCGTCGGTAATGTTGGTAGAGCAGCTGGAAAGAAATGGAAAACCATGACTGAAGAAGA-  317
            ||||||| || |||||||| ||| || ||||||||||||||| | |||||||||||||| 
Sbjct  181  TCCGTCGCTAGTGTTGGTAAAGCTGCCGGAAAGAAATGGAAATCGATGACTGAAGAAGAT  240

Query  318  AAGAGCACCTTTTGTAGCAAAATCACAGAGCAAAAAGACTGAGTATGCTGTGACTATGCA  377
            || ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct  241  AA-AGCACCTTTTGTAGCAAAAGCAAAGAGCAAAAAGACTGAGTATGCTGCGACTATGCA  299

Query  378  ACAGTATAACATGGAACTGGCTAATGGAAACAAGACAACTGGAGATGATGAGAAACAAGA  437
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  300  ACAGTATAACATGGAACTGGCTAATGGAACCAAGACAACTGGAGATGATGAGAAACAAGA  359

Query  438  G-A-AAGCTGCTGATGATTAG  456
            | | ||   ||||||||||||
Sbjct  360  GGAGAAA--GCTGATGATTAG  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23979314793


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5