BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35580.2
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491088 jgi|Araly1|491088|fgenesh2_kg.7__521__AT4G35580.1 2134 0.0
> Ahg491088 jgi|Araly1|491088|fgenesh2_kg.7__521__AT4G35580.1
Length=1647
Score = 2134 bits (1155), Expect = 0.0
Identities = 1478/1624 (91%), Gaps = 62/1624 (4%)
Strand=Plus/Plus
Query 13 AGAGAGTGTATTCAAAGTCGGAAAGAAACCCTAAAGAAGA-G---GATTATGGGTGCTGT 68
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 AGAGAGTGTATTCAAAGTCGGAAAGAAACCCTAAAGAAGAGGATTGATTATGGGTGCTGT 60
Query 69 ATCGATGGAGTCGCTTCCTTTAGGTTTCAGATTCAGACCTACCGATGAAGAGCTCGTCAA 128
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCGATGGATTCGCTTCCTCTAGGTTTCAGATTCAGACCTACCGATGAAGAGCTCGTCAA 120
Query 129 TCACTACCTCCGTCTCAAGATCAACGGACGTCACTCCGATGTCCGTGTCATCCCTGATAT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TCACTACCTCCGTCTCAAGATCAACGGACGTCACTCCGATGTCCGTGTCATCCCTGACAT 180
Query 189 CGATGTCTGCAAATGGGAACCTTGGGATCTTCCTGCTCTCTCGGTGATTAAGACGGATGA 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGATGTCTGCAAATGGGAACCTTGGGATCTTCCTGCTCTCTCGGTGATTAAGACGGATGA 240
Query 249 TCCAGAGTGGTTCTTTTTCTGCCCTCGTGATCGGAAATACCCTAATGGTCATCGCTCTAA 308
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 241 TCCAGAGTGGTTCTTTTTCTGCCCTCGTGATCGGAAATACCCCAACGGTCATCGCTCTAA 300
Query 309 CAGAGCAACTGACTCTGGCTATTGGAAAGCTACTGGTAAAGATCGTAGCATCAAGTCTAA 368
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 CAGAGCCACTGACTCTGGTTATTGGAAAGCTACTGGTAAAGATCGTAGCATCAAGTCCAA 360
Query 369 GAAGACTTTAATCGGTATGAAGAAGACTCTTGTCTTCTATCGTGGACGAGCTCCTAAAGG 428
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GAAGACTTTAATCGGTATGAAGAAGACTCTTGTCTTCTATCGCGGACGAGCTCCTAAAGG 420
Query 429 TGAGCGGACTAATTGGATTATGCACGAGTATCGTCCCACTCTTAAGGATCTTGATGGCAC 488
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 TGAGCGCACCAATTGGATTATGCACGAGTATCGTCCCACTCTTAAGGACCTTGATGGCAC 480
Query 489 TTCCCCTGGCCAAAGCCCTTACGTTCTTTGTCGCCTCTTCCACAAGCCTGATGATCGGGT 548
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||
Sbjct 481 TTCCCCTGGCCAAAGCCCCTACGTTCTTTGTCGCCTCTTCCACAAGCTTGATGATCGTGT 540
Query 549 TAATGGTGTCAAGTCCGATGAAGCAGCTTTTACGGCCAGCAACAAATACTCACCTGATGA 608
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 541 TAATGGTGTCAAGTCCGATGAAGCAGCTCCTACGACCTGCAACAAATACTCACCTGATGA 600
Query 609 TACATCATCTGATCTTGTTCAAGAAACACCTTCCTCTGATGCTGCTGTTGAGAAACCATC 668
||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 601 CACATCATCTGATCTTGTCCAAGAAACACCTTCCTCTGATGCTGCAGTGGAGAAACCATC 660
Query 669 AGATTATTCAGGTGGATGCGGTTATGCTCATAGTAATAGTACCGCAGATGGGACAATGAT 728
||||||||||||||||||||| |||||||| ||||||| | ||||||||| |||||||
Sbjct 661 AGATTATTCAGGTGGATGCGGCTATGCTCAAAGTAATACT---GCAGATGGGGCAATGAT 717
Query 729 TGAGG---CACCTGAAGAGAATCTTTGGTTATCTTGTGACCTTGAAGATCAAAAGGCACC 785
||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct 718 TGAGGAGGCACCTGAAGAGAATCTATGGTTACCTTGTGACCTTGAAGATCAAAGGGCACC 777
Query 786 ACTACCGTGTATGGATTCTATATATGCTGGTGATTTCAGTTACGATGAGATTGGATTCCA 845
||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 778 ACTACCGCGTATGGATTATACATATGCTGGTGATTTCAGTTATGATGAGATTGGATTCCA 837
Query 846 ATTTCAAGATGGTACCAGCGAACCAGATGTATCACTAACAGAATTGTTGGAGGAGGTGTT 905
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 ATTTCAAGATGGGACCAGCGAACCAGATGTATCACTTACAGAATTGTTGGAGGAGGTGTT 897
Query 906 CAATAACCCTGATGACTTCTCTTGCGAGGAATC-GATCAGTCGAGAGAATCCAGCAGTCT 964
||||||||||||||||||||||||||||||||| | ||||||||||||| | | |||| |
Sbjct 898 CAATAACCCTGATGACTTCTCTTGCGAGGAATCAG-TCAGTCGAGAGAA-C-A-CAGT-T 952
Query 965 -CACCAAATGGGATATTTTCATCTGCTAAAATGCTGCAGTCTGCAGCACCAGAGGATGCT 1023
||||||||||||| ||||||||| ||||||| ||||| ||| ||||||||||||||| |
Sbjct 953 GCACCAAATGGGATCTTTTCATCTTCTAAAATACTGCAATCTCCAGCACCAGAGGATGTT 1012
Query 1024 TTCTTCAACGACTTCATGGCTTTCACTGATACAGATGCTGAGATGGCGCAATTGCAGTAT 1083
|||||||||||||| ||||||| |||| |||||||||| ||||||| |||||||||||||
Sbjct 1013 TTCTTCAACGACTTTATGGCTTACACTAATACAGATGCCGAGATGGGGCAATTGCAGTAT 1072
Query 1084 GGTTCAGAA-GGTGGAGCTTCTGGTTGGCCAAGTGACACTAATTCATACTATAGTGATTT 1142
| |||| || || ||||||||||| |||||||| ||| || | | |||||||
Sbjct 1073 GATTCA-AATGGCGGAGCTTCTGGATGGCCAAGGGAC--TA-T--A-------GTGATTT 1119
Query 1143 GGTTCAGCAAGAGCAAATGATCAATCATAACACAGAGAACAACCTCACAGAAGGGAGAGG 1202
|||||| | |||||| ||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1120 GGTTCATCCAGAGCAGATGCTCAATCATAACACCGAGAACAACCTCACAGAAGGGAGGGG 1179
Query 1203 GATAAAGATCCGGGCTCGACAGCCTCAGAACCGGCAGAGTACAGGATTGATAAACCAGGG 1262
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1180 GATAAAGATCCGGGCTCGACAGCCTCAGAACCGGCAGAGTACAGGATTAATAAACCAGGG 1239
Query 1263 TATTGCTCCAAGGAGAATCCGTCTGCAGCTGCAGTCTAACTCTGAAGTAAAAGAACGAG- 1321
||||| ||||||||||||||||||||| ||||||||| |||||||||||| | | ||
Sbjct 1240 CATTGCGCCAAGGAGAATCCGTCTGCAGTTGCAGTCTAGCTCTGAAGTAAATCAGC-AGG 1298
Query 1322 AGGAGGTGAATGAAGGACACACTGTTATTCCCGAGGC-CAA-AGAAGCTGCAGCTAAATA 1379
|||||||||||||||||||||||||||||||||||| | | ||| | || || |
Sbjct 1299 AGGAGGTGAATGAAGGACACACTGTTATTCCCGAGGTACGAGAGAC-CAA-AG--AAGTT 1354
Query 1380 -CT-CAGAGAAGAGTGGTTCTTTGGTTAAACCTCAAATAAAGCTCAGGGCGCGGGGAACT 1437
| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 GCAGCAGAGAAGAGTGATGCTTTGGTTAAACCTCAAATAAAGCTCAGGGCGCGGGGAACA 1414
Query 1438 ATAGGCCAAGTAAAAGGAGAGAGATTTGCAGACGACGAGAAGTTTGTTGTGGTTACAGGT 1497
|||||||||||||||| ||||||| |||||||| ||||| || ||||||
Sbjct 1415 ATAGGCCAAGTAAAAGCAGAGAGAATTGCAGACAACGAG--GT-----------ACAGGT 1461
Query 1498 ACAGGTGCAGAGCAGAAAGAGACGAGGAGGGAAGCGATGGAAGGTGGTTGCAACGGTAAT 1557
| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct 1462 ---G---CAGAGCAGAAAGAGAAGAGGAGCGAATCGATGGAAGGTGGTTGCAACGGTAAT 1515
Query 1558 GGTGGCTGTGATGGTTGG-GGTAGGGATGGGTATATGGAGGACACTGGTGAGTTCATGAC 1616
|||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1516 GGTGGCAGTGATGGT-GGTGGTAGGGGTGGGTATATGGAGGACACTGGTGAGTTCATGAC 1574
Query 1617 ACAT 1620
||||
Sbjct 1575 ACAT 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5