BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35590.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491087 jgi|Araly1|491087|fgenesh2_kg.7__520__AT4G35590.1 1290 0.0
> Ahg491087 jgi|Araly1|491087|fgenesh2_kg.7__520__AT4G35590.1
Length=1022
Score = 1290 bits (698), Expect = 0.0
Identities = 944/1053 (90%), Gaps = 56/1053 (5%)
Strand=Plus/Plus
Query 86 TCTGCTTTTGCGACTCTTGGTCTTCTTCGGACATGGCACATTCCTTAACCTCACTCGCCG 145
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TCTGCTTTTGCGACTCTTGGTCTTCTTCGGACATGGCACATTCCTTGACCTCACTCGCCG 60
Query 146 TTTTCCAGAGCGTCATCCGCAAAGAGATGGTGAGGAGTTTGCATGTCTATGAATCGGTGG 205
||||||||||||||| ||| ||||||||| |||||||||||||||| |||| ||||||||
Sbjct 61 TTTTCCAGAGCGTCACCCGTAAAGAGATGATGAGGAGTTTGCATGTGTATGGATCGGTGG 120
Query 206 AGATTGAGAGAGAGTTCTGGTTCAAGAGCAAAAGCTGTTATGTAGAGAAGAAAGCGAAGC 265
|||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 121 AGATTGAGAGAGAGTTCTTGTTCAAGAGTAAAAGCTGTTATGTAGAGAAGAGAGCGAAGC 180
Query 266 CTCTGTTTCGTTCGGAAGATTTCCGGCGACCGGAGATCTCGGAAGGGTCGGTTTTTGGCA 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCTGTTTCGTTCGGAAGATTTCCGGCGACCGGAGATCTCGGAAGGGTCGGTTTTTGGCA 240
Query 326 CGTGGCGTTGTATCTTTGTGTTCCGGTTTAATCACTCGCTTCCTCGGTTTCCTACTCTTC 385
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CGTGGCGTTGTATCTTTGTCTTCCGGTTTACTCACTCGCTTCCTCGGTTTCCTACTCTTC 300
Query 386 TCTGTCTTTCCAGAAATCCCAAA-CTGGAGGACATCCCTAATTTAGCCAACGAGCTCAAG 444
|||||||||| ||||| ||| || |||||||||||||||||||||||||| |||||||||
Sbjct 301 TCTGTCTTTCAAGAAA-CCCTAAGCTGGAGGACATCCCTAATTTAGCCAATGAGCTCAAG 359
Query 445 TTTATCTCCGAGTTAAA-AC-------C-ATCAAAGATTTATGAAGAAGAACAA-TG-C- 492
||||||||||||||||| || | ||||||||||| ||||||||||||| | |
Sbjct 360 TTTATCTCCGAGTTAAATACGAAGAAACCATCAAAGATTTCTGAAGAAGAACAAATTTCT 419
Query 493 -A-G-T-A---G--CAGTACAGAGG-GATATTATAACTCTGATCTGCCTAAACCACGAAA 542
| | | | | ||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct 420 GAAGATGAACAGTGCAGTACAGACGAG-TATTATAACTCTGATCTGCCTAAACCGCGAAA 478
Query 543 GCTCGTTCTGAAACAAGATCTTAACTGCCTTCCTGATTCAGAAACCGAA--TCCGAGGAA 600
||||||| ||||||||||||||||||||||||||||||||||||||||| | || | ||
Sbjct 479 GCTCGTTTTGAAACAAGATCTTAACTGCCTTCCTGATTCAGAAACCGAACATTCG-G-AA 536
Query 601 TCTGTAAACGAAAAAACCGAACATTCGGAATTTGAAAACGATAAAACTGAACAGTCGGAA 660
|| | |||||||||||| || |||||||||| | ||| || || ||| ||
Sbjct 537 TCCGAAAACGAAAAAACTGAGCATTCGGAATC--A----GATG---CT-AA--GTCTGA- 583
Query 661 TCAGATGCTAAGACTGAGATTTTGAAGAAGAAGAAGAGGACACCATCGAGACATGTTGCT 720
||| | || ||| |||||||| || | | ||| |||| ||||||||||||
Sbjct 584 ---GATTTTG-GA--GAG-----GAAGAAGATGA-G-G-ACAACATCCAGACATGTTGCT 629
Query 721 GAACTATCCTTAGAAGAGCTTTCAAAATACTTTGACCTCACTATCGTGGAAGCTTCTCGG 780
||||| ||||||||||| ||||||||||| |||| || |||||||||||||||||||||
Sbjct 630 GAACTTTCCTTAGAAGATCTTTCAAAATATTTTGGTCTTACTATCGTGGAAGCTTCTCGG 689
Query 781 AATCTCAAGGTCGGTCTCACTGTTTTGAAAAAGAAATGCAGAGAGTTTGGGATTCCACGG 840
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 690 AATCTCAATGTCGGTCTCACTGTTTTGAAAAAGAAATGCAGAGAGTTTGGGATTCCCCGG 749
Query 841 TGGCCTCATAGGAAGATCAAATCTCTCGACTGTCTCATCCACGATCTTCAGAGGGAAGCA 900
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 750 TGGCCTCATAGGAAGATCAAATCTCTCGACAGTCTCATCCAAGATCTTCAGAGGGAAGCA 809
Query 901 GAGAAGCAGCAGGAAAAGAATGAAGCAGCAGCAATGGCGGTAGCTAAGAAACAGGAGAAA 960
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 810 GAGAAGCAGCAGGAAAAGAATGAAGCAGCAGCAATGGCGGTAGCTATGAAACAGGAGAAA 869
Query 961 CTGGAGACAGAGAAGAGAAATATAGTGAAGAGACCATTCATGGAGATAGGGATAGAAACC 1020
|||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct 870 CTGGAGACAGAGAAGAGAAATATAGTGATGAGACCATTCATGGAGATACAGACAGAAACC 929
Query 1021 AAAAAATTCAGACAAGAAAACTTCAAGAAAAGACACAGGGCTTCTAGAGCCAAGAAGAAT 1080
|| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 930 AAGAAATTCAGACAAGACAACTTCAAAAAAAGACACAGAGCTTCTAGAGCCAAGAAGAAT 989
Query 1081 CAAGAATCTCTTGTCACTTCCTCTTCCACTTAA 1113
|||||| ||||||||||||||||||||||||||
Sbjct 990 CAAGAAACTCTTGTCACTTCCTCTTCCACTTAA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5