BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35600.2
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491086 jgi|Araly1|491086|fgenesh2_kg.7__519__AT4G35600.1 2231 0.0
> Ahg491086 jgi|Araly1|491086|fgenesh2_kg.7__519__AT4G35600.1
Length=1476
Score = 2231 bits (1208), Expect = 0.0
Identities = 1404/1493 (94%), Gaps = 35/1493 (2%)
Strand=Plus/Plus
Query 73 TCAAAATTATTTTGCAACCCATCGTTGCCTCTTTCAATAGTTCTAAACTCGAGCAATAAA 132
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TCAAAAATATTTTGCAACCCATCGTTGCCTCTTTCAATAATTCTAAACTCGAGCAATAAA 60
Query 133 AACTCAAATAAACCAACTGACTTGAGATCCATATCCACTAGCTCTTGTCTGAATTGGTAA 192
| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTCAAAT-AACTAACTGACTTGAGATCCATATCCACTAGCTCTTGTCTGAATTGGTAA 119
Query 193 AACaag-aag--aag---aagaagaagaagaagaagaaagagaagGCTCATTAGAAATTG 246
|||||| ||| ||| |||||||| ||||||||||||||||||||||| | | ||
Sbjct 120 AACAAGAAAGACAAGAACAAGAAGAAAAAGAAGAAGAAAGAGAAGGCTCA-T-G-AA--- 173
Query 247 ATGGGTGCTTGTATTTCGTTCTTT-TCTTCTTCCTCTCCTTCCAAAACAGGTCTCCATAG 305
||||||| ||||||||| || ||| || |||||||||||||||| |||||||||||||||
Sbjct 174 ATGGGTGTTTGTATTTCATT-TTTCTCCTCTTCCTCTCCTTCCACAACAGGTCTCCATAG 232
Query 306 TCATGCAGCCACAACGAACAACCACAGCAATGGAACAGAGTTCTCGTC----A--ACCA- 358
|||| |||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 233 TCAT---GCCACAACGAACAACCACAGCAATGGAACAGACTTCTCGTCGTTAACGACCAC 289
Query 359 C-C-GGCGCGACAACAAACAGCAGCGTCGGACAACAGAGCCAATTCTCCGATATTTCCAC 416
| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 290 CACGGGCGCGACAACAAGCAGCAGCGTCGGACAACGGAGCCAATTCTCCGATATTTCCGG 349
Query 417 TGGGATTATAAGTGATTCCGGTAAACTACTGGAATCGCCAAATCTCAAAGTCTATAACTT 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 TGGGATTATAAGTGATTCCGGTAAACTACTGGAATCGCCAAATCTCAAAGTCTATAGCTT 409
Query 477 TCTGGATCTAAAGACGGCGACGAAGAATTTCAAACCGGATTCGATGTTGGGTCAAGGAGG 536
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 410 TCTGGATCTAAAAACGGCGACGAAGAATTTCAAACCGGACTCGATGTTGGGTCAAGGAGG 469
Query 537 TTTCGGGAAAGTATACAGAGGTTGGGTCGATGCCACGACTCTTGCTCCTTCCAGAGTCGG 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ATTCGGGAAAGTATACAGAGGTTGGGTCGATGCCACGACTCTTGCTCCTTCCAGAGTCGG 529
Query 597 TTCTGGTATGATCGTTGCCATCAAGAGATTGAATTCTGAGAGTGTTCAAGGATTTGCAGA 656
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 530 TTCTGGTATGATCGTAGCCATCAAGAGATTGAATTCAGAGAGTGTTCAAGGATTTGCAGA 589
Query 657 GTGGCGTTCAGAAGTTAACTTCTTGGGAATGCTTTCGCACCGAAATCTGGTGAAGTTATT 716
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 590 GTGGCGTTCAGAAGTTAACTTCTTGGGTATGCTTTCACACCGAAATCTGGTGAAGTTGTT 649
Query 717 GGGATACTGTCGTGAAGACAAAGAGCTTCTCCTTGTCTACGAGTTCATGCCCAAAGGAAG 776
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 650 GGGTTACTGTCGTGAAGACAAAGAGCTTCTCCTTGTCTATGAGTTCATGCCCAAAGGAAG 709
Query 777 TCTTGAGAGTCATCTTTTTAGACGAAACGATCCTTTTCCTTGGGATTTAAGGATCAAGAT 836
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 710 CCTTGAGAGTCATCTTTTTAGACGAAACGATCCTTTTCCTTGGGACTTAAGGATCAAGAT 769
Query 837 TGTGATTGGTGCAGCTCGTGGCCTTGCGTTTCTACACAGCTTACAAAGAGAAGTCATCTA 896
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 770 TGTGATCGGTGCAGCTCGTGGGCTTGCGTTTCTACACAGCTTACAAAGAGAAGTCATCTA 829
Query 897 TAGAGACTTCAAAGCTTCCAATATACTTCTTGATTCGAACTATGACGCAAAGCTTTCAGA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TAGAGACTTCAAAGCTTCCAATATACTTCTTGATTCGAACTATGACGCAAAGCTTTCAGA 889
Query 957 TTTCGGACTAGCAAAGCTAGGACCAGCAGATGAGAAGTCACACGTCACGACTAGGATCAT 1016
||||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 890 TTTCGGATTAGCAAAGCTAGGACCAGCAGACGAGAAGTCACACGTTACAACTAGGATCAT 949
Query 1017 GGGCACATATGGTTATGCTGCTCCTGAATATATGGCAACAGGCCATTTATACGTTAAGAG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GGGCACATATGGTTATGCTGCTCCTGAATATATGGCAACAGGCCATTTATACGTTAAGAG 1009
Query 1077 TGACGTATTCGCCTTTGGTGTGGTTTTACTAGAAATAATGACCGGACTGACGGCGCACAA 1136
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1010 TGACGTATTCGCCTTTGGTGTGGTTTTACTAGAAATAATGACCGGACAGACAGCGCACAA 1069
Query 1137 CACAAAACGGCCCAGAGGACAAGAGAGTCTTGTCGACTGGTTAAGACCAGAACTCTCAAA 1196
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CACAAAACGGCCGAGAGGACAAGAGAGTCTTGTCGACTGGTTAAGACCAGAACTCTCAAG 1129
Query 1197 CAAACACAGAGTGAAACAAATAATGGACAAAGGAATCAAAGGTCAATACACAACC-AAGG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 CAAACACAGAGTGAAACAAATAATGGACAAAGGAATCAAAGGTCAATACACAACCCAAG- 1188
Query 1256 TCGCGACCGAAATGGCACGCATTACACTCTCTTGTATCGAGCCAGACCCAAAAAACCGAC 1315
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 1189 TCGCGACCGAAATGGCACGTATTACACTTTCTTGTATCGAGCCAGACCCGAAAAACCGAC 1248
Query 1316 CACACATGAAGGAAGTAGTCGAAGTCCTCGAACACATCCAAGGGCTTAATGTTGTCCCTA 1375
||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 1249 CACACATGAAGGACGTAGTCGACGTTCTCGAACACATCCAACGGCTTAATGTTGTCCCTA 1308
Query 1376 ACCGTTCTTCCACTAAACAGGCCGTTGCTAACTCTTCACGTTCTTCGCCACATCACTATC 1435
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1309 ACCGTTCTTCCACTAAACAGGCCGTTTCTAGCTCTTCACGTTCTTCGCCACATCACTATC 1368
Query 1436 GCTATAAAGCTGGCGCACTTGGGGCTGAACGCAAGAGAGCAACGCCTGGACGGTTTGGAT 1495
||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 ACTATAGAGCTGGCGGAATTGGGGCTGAACGCAAGAGAGCAACGCCTGGACGGTTTGGA- 1427
Query 1496 CAGTAGAAAAATAAATAGTTGT-TTGGTATCttttttttCCGGCGGTATGAAA 1547
||||||||| |||| ||| | ||| ||| || |||||||||||||||||||
Sbjct 1428 --GTAGAAAAAGAAATGGTT-TCTTGATAT-TTGTTTTTCCGGCGGTATGAAA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5