BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35610.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944327 jgi|Araly1|944327|scaffold_700556.1 911 0.0
> Ahg944327 jgi|Araly1|944327|scaffold_700556.1
Length=850
Score = 911 bits (493), Expect = 0.0
Identities = 714/817 (87%), Gaps = 29/817 (4%)
Strand=Plus/Plus
Query 13 AACCCAGAGAAAACGAAAGTGGATGTTACTGAGGA--A-GAGAAAGAGGAATCTGATGAG 69
||||||||||||||||||||||||| | |||||| | |||| ||| || |||||||||
Sbjct 30 AACCCAGAGAAAACGAAAGTGGATGATGTTGAGGAGGATGAGAGAGAAGATTCTGATGAG 89
Query 70 CAATGGAGCGATGAAGAAACCAATATGAGAGAAATTGTTCTCGGCCTCCCTGCTTTGAAT 129
||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||| |
Sbjct 90 CAATGGAACGATGAAGAAACTGATACGAGAGAAATCGTTCTCGGCCTCCCTGCTTTGAGT 149
Query 130 ATCAGCAGTAGAATATTTG--GAGAG-AGTA--GTAG-TGTCGTTGAGGAAGATGCAGAA 183
||||||||||||||||||| || || |||| || | ||||||||| ||||||| ||||
Sbjct 150 ATCAGCAGTAGAATATTTGTTGATAGCAGTAGTGTCGCTGTCGTTGAAGAAGATGTAGAA 209
Query 184 AAAGCGCGTTTGAATGAGCAAGCGGTTCTTGCGGCGGGGTTGATTTTGGCTGCGGCAGAG 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 210 AAAGCGCGTTTGAATGAGCAAGCGGTTCTTGCGGCGGGGTTGGTTTTGGCTGCGGCAGAG 269
Query 244 GAAGCGGTTATGAAAGGAATGAATGAGGGAAGTGGGAGTGGTGGGAAGAAAAAGAGTAGA 303
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 270 GAAGCGGTTATGAAAGGAGTGAATGAGGGCAGTGGGAGTGGTGGGAAGAAAAAGAGTAGA 329
Query 304 CCAAGGATATCTACGCAAACCGATGACGAAGGGGATGGTTTGGGTGAAGGAGAAGCGAAA 363
||||||| ||| ||| |||||||||| ||| |||||||| |||| |||
Sbjct 330 CCAAGGACATCGACGAAAACCGATGATAAAGCGGATGGTTCGGGT------------AAA 377
Query 364 AAGCCGAAGAAGAAAGCAAAGGAATTGACTCATCCACCGAAAGGACCACCGGTTTGTCAT 423
||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 378 AAGCCGAAGAAGAAATCATCGGAATTGACTCATCCACCAAAAGGACCACCGGTTTGTCAT 437
Query 424 ATCTGTGGAAGAGGTTTCGGTTCGTGGAAGGCAGTGTTTGGGCATATGAGGGCTCATAGA 483
||||||||| ||||||||||||| |||||||| |||||||| ||||||||||| |||| |
Sbjct 438 ATCTGTGGACGAGGTTTCGGTTCTTGGAAGGCTGTGTTTGGACATATGAGGGCACATAAA 497
Query 484 GATAGAAACTATCAAGGGTTTCTTCCTCCTCCTACATTCTCTGCGGGGGCTGAAAGGTTT 543
||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||||||
Sbjct 498 GATAGAAACTATCAAGGATTTCTCCCCCCTCCTACATTCTCTGCGGCTGCTGAAAGGTTT 557
Query 544 GT-GATTCCCGGGCTAAGA-TCTGCTTTTACTATTGCCACTG-TCGGAGGAGGAAGTTCT 600
| |||||| || || | ||||||||| |||||| ||||| | |||||||| ||||||
Sbjct 558 -TCGATTCCTGGAAGAA-ACTCTGCTTTTGCTATTGTCACTGCT-GGAGGAGGGAGTTCT 614
Query 601 GGTGGTGTAGC-GGTAGGAGGAAGAAGTTCCGGTGATTTTTCTGGCAGTGGTGGTGGTGA 659
||||| | || || ||||||| |||||||||||| || | ||| ||||| |||||||||
Sbjct 615 GGTGGCCTTGCTGG-AGGAGGAGGAAGTTCCGGTGGTTGTCCTGCCAGTGCTGGTGGTGA 673
Query 660 TGCGCCAGGATCTGAAGGTGGGAGAGGTTCAGGTATTGATTTGAATGTGGAACCTGTGGA 719
||| |||| |||||| |||| |||| ||| |||||| ||||||||||| ||||||||
Sbjct 674 TGCTTGGGGATGTGAAGGCGGGAAAGGTGCAGCTATTGACTTGAATGTGGATCCTGTGGA 733
Query 720 GCAAGTAGAGGAAGCGACTGAATCTGGATGTATTGCCAAGTTCGATCTTAATAAATCTCC 779
| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 734 GGAAGTAGAGGAAGCTACTGAATCTGGATTTATTGCCAAGTTTGATCTTAATAAATCGCC 793
Query 780 ACCAAAAGATGAAGAGGAAGAGGACAAACCCAAGTGA 816
|||||||||||||||||||||||||||| ||||||||
Sbjct 794 ACCAAAAGATGAAGAGGAAGAGGACAAAGCCAAGTGA 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5