BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35620.1
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491085 jgi|Araly1|491085|fgenesh2_kg.7__518__AT4G35620.1 2357 0.0
Ahg931622 jgi|Araly1|931622|scaffold_304079.1 885 0.0
> Ahg491085 jgi|Araly1|491085|fgenesh2_kg.7__518__AT4G35620.1
Length=1557
Score = 2357 bits (1276), Expect = 0.0
Identities = 1438/1514 (95%), Gaps = 20/1514 (1%)
Strand=Plus/Plus
Query 67 cttcttcttcttctagattcttctCCAGGAGCACTAT---CAAATCGAGTAAAATAAACA 123
||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||
Sbjct 49 CTTCTTCTTCTTCTAGATTCTTCTCGAGGAACACTATCACCAAATCGAGTAAAAT-AACA 107
Query 124 ATGGTTAATCCAGAGGAGA-ACAATCGTAATCTCGTTGTCAAACCCATTACAGAGATTCT 182
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 108 ATGGTTAATCCAGAGGAGAGA-AATCGTAATCTCGTTGTCAAACCCATTACAGAGATTCT 166
Query 183 TCAAGATGATGATAAGAGAAGCAGAAAATTCGG-TGTAGAGATGAAGAGACAGAACAGGA 241
|||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||| |
Sbjct 167 TCAAGATGATGATACGAGAAGCAGAAAATTCGGAT-TAGAGGTGAAGAGACAGAACAGAA 225
Query 242 GAGCATTGGGTGTGATTAATCACAATCTCGTTGGTGCAAAAGCTTATCCTTGTGTTGTTA 301
|||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||
Sbjct 226 GAGCATTGGGTGTGATTAATCAGAATCTCGTTGGTTCTAAAGCTTATCCTTGCGTTGTTA 285
Query 302 ACAAGAGAAGAGGCTTATCTCAGAGAAAACAAGAAAGCTGTGACAAGAAGAAGCTTGATT 361
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 286 ACAAGAGAAGAGGCTTATCTGAGAGAAAACAAGAAAGCTGTGAGAAGAAGAAGCTTGATT 345
Query 362 CATTGCATCCGTCAATTTCAAGATCTCAGGAAGAGACTAAGAAGCTGAAACCAAGTGGAA 421
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 346 CATTACATCCGTCAATTGCAAGATCTCAGGAAGAGACTAAGAAGCTGAAACCAAGTGGGA 405
Query 422 ACGAGTTTGGTGATTGCATATTCATTGATGAAGAAGAGGAGAAGAATGAAGAAGTTACAT 481
|||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||
Sbjct 406 ACGAGTTTGGTGATTGTATATTCATTGATGAAGAAGAAGAGAAGAATGAAGAAGCTACAT 465
Query 482 TGGACCAACCTATGCCAATGTCATTGGAGGAACCATACATTGAATTTGATCCAATGGAGG 541
||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 466 TGGACCAACCTATGCCAATGTCATTGGAGAAACCATACAATGAATCCGATCCAATGGAGG 525
Query 542 AAGAAGTTGAGATGGAGGATAT-G--GAAGAAGAACAAGAAGAACCAGTTTTGGATATAG 598
|||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||| |
Sbjct 526 AAGAAGTTGAGATGGAGGATATAGAAGAAGAAGAAGAAGAAGAACCAATTTTGGATATCG 585
Query 599 ACGAATACGATGCAAACAACTCTCTTGCAGCTGTTGAATACGTCCA-AGATCTTTACGAT 657
|||||||||||||||||||||||||||||| ||||||||| || || |||||||||||
Sbjct 586 ACGAATACGATGCAAACAACTCTCTTGCAGTTGTTGAATATGT-CAGTGATCTTTACGAA 644
Query 658 TTCTACCGTAAAACCGAGAGATTTAGCTGTGTTCCTCTAGATTACATGGCGCAACAGTTT 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 645 TTCTACCGTAAAACCGAGAGATTTAGCTGTGTTCCTCTAGATTATATGGCGCAACAGTTT 704
Query 718 GATATATCTGACAAAATGAGAGCAATACTTATTGACTGGCTCATCGAGGTACATGATAAG 777
|||||| |||| |||||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct 705 GATATAACTGATAAAATGAGAGCAATACTTATCGATTGGCTCATAGAGGTACATGACAAA 764
Query 778 TTTGAGCTGATGAACGAGACATTGTTTCTAACAGTCAATCTGATAGATAGATTCTTGTCC 837
|||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 765 TTTGAGCTAATGAACGAGACATTGTTTCTAACAGTGAATCTGATAGATAGATTCCTGTCC 824
Query 838 AAGCAAGCTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AAGCAAGCTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCT 884
Query 898 TGCAAGTACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TGCAAGTACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAA 944
Query 958 GCTTATACGAGGACCGATGTTTTAGAAATGGAGAAGATTATGCTTAGTACTTTGCAATTC 1017
||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GCTTATATGAGGAACGAAGTTTTAGAAATGGAGAAGATTATGCTTAGTACTTTGCAATTC 1004
Query 1018 AATATGTCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 AATATGTCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCA 1064
Query 1078 GACAAGAAGCTTGAGATCTTGGCGTCGTTCTTGATTGAGCTTGCTCTTGTGGACTACGAA 1137
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1065 GACAAGAAGCTTGAGATCTTGGCGTCGTTCTTGATCGAGCTTGCTCTTGTGGACTACGAA 1124
Query 1138 ATGGTTCGGTATCCACCATCGTTACTCGCCGCCACTGCCGTGTACACAGCTCAATGTACA 1197
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1125 ATGGTTCGGTATCCACCATCGTTGCTAGCCGCCACTGCAGTGTACACAGCTCAATGTACA 1184
Query 1198 ATCCATGGCTTCAGTGAATGGAACAGCACTTGTGAATTCCATTGTCACTACTCTGAGAAT 1257
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1185 ATCCATGGCTTCAGTGAATGGAACAGCACTTGTGAATTCCACAGTCACTACTCTGAAAAT 1244
Query 1258 CAACTCCTAGAATGTTGTAGAAGAATGGTGAGACTACATCAGAAAGCTGGGACTGATAAA 1317
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1245 CAACTCATAGAATGTTGTAGAAGAATGGTGAGACTACATCAGAAGGCTGGGACTGATAAA 1304
Query 1318 CTAACAGGAGTACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACAAAGTAT 1377
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 CTAACAGGAATACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACAAAGTAT 1364
Query 1378 GAAGCTGCACACTTTCTTGTGTCAGATTCTCACTAAAGAGTGGAAAATAGTAGTTTGTGT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 GAAGCTGCACACTTTCTTGTGTCAGATTCTCACTAAAGAGTGGAAAATAGTAGTTTGTGT 1424
Query 1438 ATAGCTCGCTGCTAACATTTTCCCTCTCAATTTTTAATTACAAACGAAATAAGTTCAAAA 1497
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1425 ATAGCTAGCTGCTAACATTTTCCCTCTCAATTTTTAATTACAAAAGAAATAAGTTCAAAA 1484
Query 1498 CAT-TCCTCTGA-TTTGATCTGTAAC----AAGTCTTTCTTTTATTGATATCTCAGCAAT 1551
|| |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1485 -ATATCCTCTGAATTTGATCTGTAACTTTCAAGTCTTCCTTTTATTGATATCTCAGCAAT 1543
Query 1552 AAAATTCTCTTATA 1565
|||||||||| |||
Sbjct 1544 AAAATTCTCTAATA 1557
> Ahg931622 jgi|Araly1|931622|scaffold_304079.1
Length=1325
Score = 885 bits (479), Expect = 0.0
Identities = 1037/1294 (80%), Gaps = 87/1294 (7%)
Strand=Plus/Plus
Query 164 AACCCATTACAGA-GATTCTTCAAGATGATGATA-AGAGAAGCAGAAAATTCGGTGTAGA 221
|||||| |||| | ||||||||||||||| | | | ||||| ||||||||||| |||
Sbjct 38 AACCCACTACA-ACGATTCTTCAAGATGA--A-ACA-AGAAGTAGAAAATTCGGACAAGA 92
Query 222 GATGAAGAGACAGAACAGGAGAGCATTGGGTGTGATTAATCACAATCTCGTTGGTGCAAA 281
|||||||| | |||| || |||| ||||||||||||||||| ||||| |||||||||||
Sbjct 93 GATGAAGAAAGAGAAGAGAAGAGTGTTGGGTGTGATTAATCAGAATCTTGTTGGTGCAAA 152
Query 282 AGCTTATCCTTGTGTTGTTAACAAGAGAAGAGGC------TTATCTCA-GAG-AA-AACA 332
|| ||||||||||||||| ||||||||| || || |||||| | || || || |
Sbjct 153 AGTTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTGTTATCTAATAAGCAAGAAGA 212
Query 333 AGAAAGCTGTGACA-AGAAGAAGCTTGATTCATTGCATCCGTCAATTTCAAGATCT-CAG 390
|||| | ||| | | |||||||| ||||||| |||| ||| |||||| |||||||| ||
Sbjct 213 AGAAGGATGTCA-AGAGAAGAAGTTTGATTCTTTGCGTCCTTCAATTACAAGATCTGGAG 271
Query 391 --G-A-A-GAGACT---AAGAAGCTGAAACCAAGTGGAAACGAGTTTGGTG--ATTGCAT 440
| | | |||||| ||||||||||| ||| | | | || | ||| | || |
Sbjct 272 TTGAAGAGGAGACTAAGAAGAAGCTGAAGCCATCT-GTTCCAAG--TAGTGCAAATG-GT 327
Query 441 ATTCATTGA-TGAAGAAGAGGAGAAGAATGAAGAAGTTACATTGGACCAACCTATGCCAA 499
||| ||| || | | | || ||| || |||| |||||||||||| || |||||||
Sbjct 328 -TTCGGTGACTGTATATTTGTTGATGAA-GAGGAAGCTACATTGGACCATCCGATGCCAA 385
Query 500 TGTC-ATTG-GA-G--G-----AACCATACATTGAATTTGATCCAATGGAGGAAGAAGTT 549
|||| ||| || | | || ||| ||||||| ||| |||||||| | ||||||
Sbjct 386 TGTCGCTTGAGAGGCCGTTCACAAGCAT-CATTGAAGCTGACCCAATGGA-G--GAAGTT 441
Query 550 GAGATGGAGGATATGGAAGAAGAACAAGAAGAACCAGTTTTGGATATAGACGAATAC-GA 608
|||||||||| ||| || || ||||||||| | |||||||| || | | | ||
Sbjct 442 GAGATGGAGG--ATGTAA-CAG---TGGAAGAACCAATCTTGGATATCGATGTCT-CAGA 494
Query 609 TGCAAACAACTCTCTTGCAGCTGTTGAATACGTCCAAGATCTTTACG-ATTTCTACCGTA 667
||| || ||||| ||||||||||||||||| |||||||||||||||| |||| ||| | |
Sbjct 495 TGCGAAGAACTCACTTGCAGCTGTTGAATATGTCCAAGATCTTTACGCATTT-TACAG-A 552
Query 668 A-AACCGAGAGATTTAGCTGTGTTCCTCTAGATTACATGGCGCAACAGTTTGA--TATAT 724
| || ||||| ||||| |||||||| ||||||| ||| |||||| | || || |
Sbjct 553 ACAATGGAGAGCTTTAGTTGTGTTCCAGTAGATTATATGATGCAACAAATAGACTTA-AA 611
Query 725 CTGACAAAATGAGAGCAATACTTATTGACTGGCTCATCGAGGTACATGATAAGTTTGAGC 784
| || || |||||||||||||| ||||||||| | |||||||| |||||||||||||| |
Sbjct 612 C-GAGAAGATGAGAGCAATACTAATTGACTGGTTAATCGAGGTGCATGATAAGTTTGATC 670
Query 785 TGATGAACGAGACATTGTTTCTAACAGTCAATCTGATAGATAGATTCTTGTCCAAGCAAG 844
|||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 671 TGATGAACGAGACACTGTTTCTGACAGTCAATCTGATAGATAGATTCTTGGCCAAGCAAG 730
Query 845 CTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCTTGCAAGT 904
||||| |||||||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct 731 CTGTTATGAGAAAGAAGCTTCAGCTTGTAGGGTTAGTGGCTTTGCTCTTAGCTTGCAAGT 790
Query 905 ACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAAGCTTATA 964
||||||||||||| || ||| |||| |||||||| ||| ||||||| |||||||||||||
Sbjct 791 ACGAAGAGGTTTCGGTTCCTGTTGTCGAAGATTTAGTACTCATTTCAGACAAAGCTTATA 850
Query 965 CGAGGACCGATGTTTTAGAAATGGAGAAGATTATGCTT-AGTACTTTGCAATTCAATATG 1023
|||||| ||||||| |||| |||||||| | ||| || ||||||||||||||||||||
Sbjct 851 CGAGGAACGATGTTCTAGAGATGGAGAAAACAATG-TTGAGTACTTTGCAATTCAATATC 909
Query 1024 TCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCAGACAAG 1083
||||| || || ||||||||||||||||| || || ||||||||||||||| ||||||||
Sbjct 910 TCGTTGCCGACACAATACCCTTTCTTGAAAAGATTTCTCAAGGCAGCTCAAGCAGACAAG 969
Query 1084 AAGCT-TGAGATCTTGGCGTCGTTCTTGATTGAGCTTGCTCTTGTGGACTACGAAATGGT 1142
||| | |||| ||||||| ||||||||||| |||||||| |||||||| || || ||| |
Sbjct 970 AAG-TGTGAGGTCTTGGCATCGTTCTTGATCGAGCTTGCGCTTGTGGAGTATGAGATGCT 1028
Query 1143 TCGGTATCCACCATCGTTACTCGCCGCCAC-TGCCGTGTACACAGCTCAATGTACAATCC 1201
||||| ||||||||| ||||| || ||||| | | |||||||| |||||||||||| | |
Sbjct 1029 TCGGTTTCCACCATCATTACTAGCTGCCACAT-CTGTGTACACTGCTCAATGTACACTTC 1087
Query 1202 ATGGCTTCAGTG-AATGGAACAGCACTTGTGAATTCCATTGTCACTACTCTGA-GAATCA 1259
|||| ||||| | |||||||||| || ||||||||| ||||||| |||||||| || |||
Sbjct 1088 ATGGTTTCAG-GCAATGGAACAGTACATGTGAATTCTATTGTCATTACTCTGAAGA-TCA 1145
Query 1260 ACTCCTAGAATGTT-GTAGAAGAATGGTGAGACTACATCAGAAAGCTGG-GACTGATAAA 1317
||| | ||||||| | ||| | ||||||| || ||||||| || || ||| | ||
Sbjct 1146 GCTCATGGAATGTTTGCGGAA-ACTGGTGAGTCTTCATCAGAGGGC-GGCGACAGGGAA- 1202
Query 1318 CTA-ACAGGAGTACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACAAAGTA 1376
|| ||||||||| |||| || |||| | | |||||||| || |||||||||| || ||
Sbjct 1203 CTTGACAGGAGTATATAGGAAGTACAACACATCCAAATTTGGGTACATAGCAA-AATGT- 1260
Query 1377 TGAAGCTGCACACTTTCT-TGTGTCAGATTCTCA 1409
||||||||||||||||| | |||| || |||||
Sbjct 1261 -GAAGCTGCACACTTTCTAT-TGTCTGAGTCTCA 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58697067545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5