BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35630.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491084 jgi|Araly1|491084|fgenesh2_kg.7__517__AT4G35630.1 2556 0.0
Ahg931623 jgi|Araly1|931623|scaffold_304080.1 1269 0.0
> Ahg491084 jgi|Araly1|491084|fgenesh2_kg.7__517__AT4G35630.1
Length=1657
Score = 2556 bits (1384), Expect = 0.0
Identities = 1587/1679 (95%), Gaps = 37/1679 (2%)
Strand=Plus/Plus
Query 1 GACAAAACTAGTACCACCT-A-AC-AC-AAACGCTGTCGTTTTCAAGCTACATTTATATA 56
||||||||||||||||||| | || || |||||| ||||||||||| ||| ||| ||||
Sbjct 1 GACAAAACTAGTACCACCTAACACGACGAAACGCCGTCGTTTTCAATCTATTTTTTTATA 60
Query 57 TCTCCCACCAACTCTTTCTCAGATCTTTTGTCTAAGTAAAAGCGAAAAGGGCAACAAACA 116
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 61 TCTCCCACCAACTCTTTTTCAGATC-TTTGTCTAAGTAAAAGCGAAAAGGGCAACGCACA 119
Query 117 AAAATAAACTCG-GAGAATCTCACAACAATCATGGCGGCTACGACGAACTCTTTCCTTGT 175
|||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 AAAATAAACT-GCGACAATCTCACAACAATCATGGCGGCTTCGACGAACTCTTTCCTTGT 178
Query 176 CGGAAGCAACAACACTCAGATTCCTGCTTTGAAACCCAAATCATCATCTCAATCCTTTCT 235
||| | |||||||||||||| |||||||| |||||||||||| ||||||||||| ||||
Sbjct 179 CGG-A--AACAACACTCAGATCCCTGCTTTCAAACCCAAATCAACATCTCAATCCCTTCT 235
Query 236 TCACCTCAGCAAACCAAACACCGTCAACTTCGTCAGCAAAACCAAGCCCGTCGCTGTTAG 295
|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 236 TCACCTCAGCAAACCAAACACCGTGAACTTCGCCGGCAAAACCAAGCCCGTCGCTGTTAG 295
Query 296 ATGCGTCGCTTCAACGACTCAAGTTCAAGATGGAGTTAGATCCGGCTCCGTCGGATCCCA 355
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 296 ATGCGTCGCGTCAACGACTCAAGTTGAAGATGGAGTTAAATCCGGCTCCGTCGGATCCCA 355
Query 356 AGAACGTGTCTTCAACTTCGCGGCGGGTCCAGCCACTTTGCCTGAGAACGTTCTCCTAAA 415
|||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 356 AGAACGGGTTTTTAACTTCGCGGCGGGTCCAGCCACTTTACCTGAGAACGTTCTCCTAAA 415
Query 416 AGCTCAGGCGGATCTATACAACTGGCGTGGATCTGGCATGAGTGTGATGGAGATGAGTCA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGCTCAGGCGGATCTATACAACTGGCGTGGATCTGGCATGAGTGTGATGGAGATGAGTCA 475
Query 476 CAGAGGCAAAGAGTTTCTCTCGATTATACAAAAAGCTGAATCGGATCTTCGTCAGCTTC- 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 CAGAGGCAAAGAGTTTCTCTCGATTATACAAAAAGCTGAATCGGATCTTCGTCAGC-TCT 534
Query 535 TCGAGATTCCTCAGGAATATTCCGTTTTGTTCTTACAAGGTGGTGCCACTACTCAATTCG 594
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 535 TAGAGATTCCTCAGGAATATTCCGTTTTGTTCTTACAAGGTGGTGCGACTACTCAATTCG 594
Query 595 CTGCTTTACCTCTCAATCTCTGCAAATCGGATGATACAGTCGATTTCGTTGTTACTGGTT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTGCTTTACCTCTCAATCTCTGCAAATCGGATGATACAGTCGATTTCGTTGTTACTGGTT 654
Query 655 CGTGGGGTGATAAAGCTGTCAAGGAAGCGAAGAAGTATTGCAAGACTAATGTGATTTGGT 714
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 655 CGTGGGGAGATAAAGCTGTCAAGGAAGCGAAGAAGTATTGCAAGACGAATGTGATTTGGT 714
Query 715 CTGGGAAATCTGAGAAATACACAAAGGTTCCATCTTTTGAGGAGTTGGAGCAAACTCCGG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 CTGGGAAATCTGAGAAATACACAAAGGTTCCATCTTTTGAGGAGTTGGAGCAAACTCTTG 774
Query 775 ACGCTAAGTATTTGCATATATGCGCCAATGAGACTATTCATGGAGTTGAGTTTAAAGATT 834
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCATGGAGTTGAGTTTAAAGATT 834
Query 835 ACCCTGTTCCT-AAAA-----ATGGGTTCTTGGTTGCTGATATGTCTTCTAACTTCTGTT 888
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 835 ACCCTGTTCCTAAAAACCCTGATGGGTTCTTGGTTGCTGATATGTCTTCTAACTTCTGTT 894
Query 889 CGAAACCTGTTGATGTATCTAAGTTTGGTGTGATTTACGGTGGTGCACAGAAGAACGTTG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CGAAACCTGTTGATGTATCTAAGTTTGGTGTGATTTACGGTGGTGCACAGAAGAACGTTG 954
Query 949 GTCCATCTGGTGTCACAATTGTGATCATTCGTAAAGATTTGATTGGGAATGCTCAAGATA 1008
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 955 GTCCATCTGGTGTCACAATTGTGATCATTCGTAAAGATTTGATTGGAAACGCTCGAGATA 1014
Query 1009 TTACTCCTGTGATGCTTGATTACAAGATTCATGATGAGAATAGTTCGTTGTACAACACGC 1068
| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1015 TCACTCCTGTGATGCTTGATTACAAGATTCATGATGAGAACAGTTCGCTGTACAACACGC 1074
Query 1069 CTCCTTGCTTTGGGATTTACATGTGTGGTCTTGTGTTTGAAGATCTGTTGGAGCAAGGTG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTCCTTGCTTTGGGATTTACATGTGTGGTCTTGTGTTTGAAGATCTGTTGGAGCAAGGTG 1134
Query 1129 GATTGAAAGAAGTGGAGAAGAAGAACCAGAGGAAAGCTGATTTGCTTTACAATGCTATTG 1188
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1135 GATTGAAAGAAGTGGAGAAGAAGAATCAGAGGAAAGCTGATTTGCTTTACAATGCCATTG 1194
Query 1189 AAGAAAGCAATGGCTTTTTCAGATGTCCTGTTGAGAAATCAGTGAGGTCGTTGATGAATG 1248
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1195 AAGAAAGCAAAGGCTTTTTCAGGTGTCCTGTTGAGAAATCAGTGAGGTCGTTGATGAATG 1254
Query 1249 TGCCTTTCACATTGGAGAAGTCTGAATTGGAAGCTGAGTTTATCAAGGAAGCTGCTAAAG 1308
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGCCTTTTACATTGGAGAAATCTGAATTGGAAGCTGAGTTTATCAAGGAAGCTGCTAAAG 1314
Query 1309 AGAAGATGGTGCAGCTCAAAGGACATAGATCAGTGGGAGGTATGAGAGCTTCTATTTACA 1368
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGAAGATGGTGCAGCTCAAAGGGCATAGATCAGTGGGAGGTATGAGAGCTTCTATTTACA 1374
Query 1369 ATGCAATGCCTTTGGCTGGTGTTGAAAAGCTTGTTGCTTTCATGAAAGATTTCCAGGCTA 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ATGCAATGCCTTTGGCTGGTGTTGAAAAGCTTGTTGCTTTCATGAAAGATTTCCAGGCTA 1434
Query 1429 AGCATGCTTAGTTTTAAGGGTTTTTGCATTTTGGTTATGTTTGTTGAAAGATGATAAGCT 1488
|||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1435 AGCATGCTTAGTTTTAAGGGTTTTTGCATTTTGGTTATGTTTGTTG---G--G-T--G-- 1484
Query 1489 TTAAAGATGATAAGCTTTAAAGCTTATGATTTGtttttttttCTTCTTTTCAGAATGAAT 1548
| |||||||||||||||||||||||||| |||| |||||||||| |||||| |||
Sbjct 1485 --A----TGATAAGCTTTAAAGCTTATGATTTGGTTTTCTTTCTTCTTTCCAGAATCAAT 1538
Query 1549 AATGTTTAACAATGTATCAAAATCTTTCTCCA-TCAATTGGAAAAACAAGTTTGTTAACA 1607
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1539 AATGTTTAGCAATGTATCAAAATCTTTCTCCAATCAATTGGAAAAACAAGTTTGTTAACA 1598
Query 1608 AA-CAAAGAGCTTTGTTATTTGTTTG-AAGTGATTATGATTGATGATGAAAACCGCCTT 1664
|| |||||||||||||| ||| ||| ||||||| |||||| |||||||||| ||||||
Sbjct 1599 AAACAAAGAGCTTTGTTTTTTTTTTTTAAGTGATGATGATTAATGATGAAAATCGCCTT 1657
> Ahg931623 jgi|Araly1|931623|scaffold_304080.1
Length=1305
Score = 1269 bits (687), Expect = 0.0
Identities = 965/1097 (88%), Gaps = 28/1097 (3%)
Strand=Plus/Plus
Query 358 AACGTGTCTTCAACTTCGCGGCGGGTCCAGCCACTTTGCCTGAGAACGTTCTCCTAAAAG 417
|||| |||||||| ||||| || ||||||||| | || || || ||||| ||||| ||||
Sbjct 197 AACGAGTCTTCAATTTCGCCGCCGGTCCAGCCGCATTACCGGAAAACGTCCTCCTCAAAG 256
Query 418 CTCAGGCGGATCTATACAACTGGCGTGGATCTGGCATGAGTGTGATGGAGATGAGTCACA 477
|||| | ||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 257 CTCAATCAGATCTCTATAACTGGCGTGGATCTGGTATGAGTGTCATGGAGATGAGTCACC 316
Query 478 GAGGCAAAGAGTTTCTCTCGATTATACAAAAAGCTGAATCGGATCTTCGTCAGCTTCTCG 537
| || |||||||||||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct 317 GTGGTAAAGAGTTTCTCTCAATCATACAAAAAGCTGAATCTGATCTCCGTCAGCTTCTCG 376
Query 538 AGATTCC-TCAGGAATATTCCGTTTTGTTCTTACAAGGTGGTGCCACTACTCAATTCGCT 596
||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 377 AGATTCCATC-GGAATATTCCGTTTTGTTCTTACAAGGCGGTGCCACTACTCAATTCGCT 435
Query 597 GCTTTACCTCTCAATCTCTGCAAATCGGATGATACAGTCGATTTCGTTGTTACTGGTTCG 656
|||||||||||||||||||||||||| |||||| | || |||| |||||||||||| ||
Sbjct 436 GCTTTACCTCTCAATCTCTGCAAATCTGATGATTCTGTTGATTACGTTGTTACTGGATCT 495
Query 657 TGGGGTGATAAAGCTGTCAAGGAAGCGAAGAAGTATTGCAAGACTAATGTGATTTGGTCT 716
||||| ||||||||| | |||||||||||||| ||||| || |||| ||||||||||||
Sbjct 496 TGGGGAGATAAAGCTTTTAAGGAAGCGAAGAAATATTGTAACCCTAAAGTGATTTGGTCT 555
Query 717 GGGAAATCTGAGAAATACAC-AAAGGTTCCATCTTTTGA-GGAGTTGGAGCAAACTCCGG 774
|| |||||||||||||| || ||| |||||||| ||||| ||| |||||||| ||| ||
Sbjct 556 GGTAAATCTGAGAAATATACTAAA-GTTCCATCCTTTGATGGA-TTGGAGCAGACTTCGC 613
Query 775 ACGCTAAGTATTTGCATATATGCGCCAATGAGACTATTCATGGAGTTGAGTTTAAAGATT 834
|||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 614 ACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCATGGTGTTGAATTCAAAGATT 673
Query 835 ACCCTGTTCCTAAAAA---TG--GG--TTCTTGGTTGCTGATATGTCTTCTAACTTCTGT 887
| |||||| |||||| || || ||||| |||||||||||||||| || ||||||
Sbjct 674 ATCCTGTTGTTAAAAACCCTGATGGTATTCTT-ATTGCTGATATGTCTTCCAATTTCTGT 732
Query 888 TCGAAACCTGTTGATGTATCTAAGTTTGGTGTGATTTACGGTGGTGCACAGAAGAACGTT 947
||||| || || |||||||| || || ||||||||||||| |||||| |||||||| |||
Sbjct 733 TCGAAGCCGGTGGATGTATCGAAATTCGGTGTGATTTACGCTGGTGCGCAGAAGAATGTT 792
Query 948 GGTCCATCTGGTGTCACAATTGTGATCATTCGTAAA-GATTTGATTGGGAATGCTCA-AG 1005
||||| ||||||||||| |||||||| ||||| ||| |||||||||||||| ||| | ||
Sbjct 793 GGTCCTTCTGGTGTCACCATTGTGATAATTCG-AAAGGATTTGATTGGGAACGCT-AGAG 850
Query 1006 ATATTACTCCTGTGATGCTTGATTACAAGATTCATGATGAGAATAGTTCGTTGTACAACA 1065
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 851 ATATTACTCCGGTGATGCTTGATTACAAGATTCATGATGAGAACAGTTCGTTGTATAACA 910
Query 1066 CGCCTCCTTGCTTT-GGGATTTACATGTGTGGTCTTGTGTTTGAAGATCTGTTGGAGCAA 1124
|||| || || ||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 911 CGCCACCGTG-TTTCGGGATTTACATGTGTGGTCTTGTGTTTGATGATTTGTTGGAGCAA 969
Query 1125 GGTGGATTGAAAGAAGTGGAGAAGAAGAACCAGAGGAAAGCTGAT-TTGCTT-TACAATG 1182
||||| ||||| ||||||||||||||||| |||||||||||| || ||| || |||||||
Sbjct 970 GGTGGGTTGAAGGAAGTGGAGAAGAAGAATCAGAGGAAAGCT-ATGTTG-TTGTACAATG 1027
Query 1183 CTATTGAAGAAAGCA-ATGGCTTTTTCAGATGTCCTGTTGAGAAATCAGTGAGGTCGTTG 1241
| ||||| || || | | || |||||||| ||||||||||||||||| |||||||| |||
Sbjct 1028 CAATTGATGAGAGTAGA-GGTTTTTTCAGGTGTCCTGTTGAGAAATCTGTGAGGTCTTTG 1086
Query 1242 ATGAATGTGCCTTTCACATTGGAGAAGTCTGAATTGGAAGCTGAGTTTATCAAGGAAGCT 1301
|||||||| ||||| || |||||||| || |||||||||||||||||||| || ||||||
Sbjct 1087 ATGAATGTTCCTTTTACGTTGGAGAAATCGGAATTGGAAGCTGAGTTTATTAAAGAAGCT 1146
Query 1302 GCTAAAGAGAAGATGGTGCAGCTCAAAGGACATAGATCAGTGGGAGGTATGAGAGCTTCT 1361
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1147 GCTAAGGAGAAGATGGTGCAGCTCAAGGGACATAGATCAGTGGGAGGTATGAGAGCTTCT 1206
Query 1362 ATTTACAATGCAATGCCTTTGGCTGGTGTTGAAAAGCTTGTTGCTTTCATGAAAGATTTC 1421
||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 1207 ATTTACAATGCAATGCCGTTGGCCGGCGTTGAGAAGCTAGTTGCTTTCATGAAAGATTTT 1266
Query 1422 CAGGCTAAG-CATGCTT 1437
||||| | | |||||||
Sbjct 1267 CAGGC-ACGGCATGCTT 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5