BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35640.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944324 jgi|Araly1|944324|scaffold_700553.1 1831 0.0
Ahg480656 jgi|Araly1|480656|fgenesh2_kg.3__3357__AT2G17640.1 809 0.0
Ahg491084 jgi|Araly1|491084|fgenesh2_kg.7__517__AT4G35630.1 193 4e-48
> Ahg944324 jgi|Araly1|944324|scaffold_700553.1
Length=1110
Score = 1831 bits (991), Expect = 0.0
Identities = 1067/1105 (97%), Gaps = 0/1105 (0%)
Strand=Plus/Plus
Query 366 TCACTCTTTTTGGTCATGGCTTGTATAAACGGCGAGAATCGTGATTTTTCTTCCTCGTCA 425
|||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 6 TCACTCCTTTTGGTCATGGCTTGTATAAACGGCGAGAATTGTGACTTTTCTTCCTCATCA 65
Query 426 TCTTTGTCTTCTCTTCCAATGATTGTCTCCCGGAACTTTTCTGCCAGAGACGATGGAGAG 485
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 66 TCCTTATCTTCTCTTCCAATGATTGTCTCGCGGAACTTTTCTGCCAGAGACGATGGAGAG 125
Query 486 ACCGGTGACGAGTTTCCTTTCGAGAGGATTTTCCCGGTTTACGCTAGAGGAACCCTTAAT 545
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 126 ACCGGTGACGAGTTTCCTTTCGAGAGGGTTTTCCCGGTTTACGCTAGAGGGACCCTTAAT 185
Query 546 CCCGTGGCCGACCCGGTTTTGCTGGATTTTACCAATTCTAGTTATGACCCAATTTGGGAT 605
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 186 CCCGTGGCCGACCCGGTTTTGCTGGATTTTACCAATTCTGGTTATGACCCAATTTGGGAT 245
Query 606 TCTATAAGAGAAGAAGCTAAGCTTGAGGCAGAAGAGGAGCCGGTTTTGAGTAGCTTCTTG 665
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 246 TCTATAAGAGAAGAAGCTAAGCTTGAGGCAGAAGAGGAGCCGATTTTGAGTAGCTTCTTG 305
Query 666 TATGCTAGTATCTTGTCGCATGACTGTTTAGAGCAAGCATTGAGTTTTGTTCTAGCTAAC 725
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 306 TATGCTAGTATCTTATCACATGACTGTTTAGAGCAAGCATTGAGTTTTGTTCTGGCTAAC 365
Query 726 CGTCTCCAAAACCCTACCTTGTTGGCAACTCAGCTTATGGATATATTTTGCAACGTTATG 785
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 366 CGTCTCCAAAACCCTACCTTGTTAGCAACTCAACTTATGGATATATTTTGCAATGTTATG 425
Query 786 GTACATGACAGAGGTATTCAAAGCTCGATTCGTCTTGATGTTCAGGCATTCAAAGACAGA 845
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 426 GTACATGACAGAGGTATTCAGAGCTCCATTCGTCTTGATGTTCAGGCATTCAAAGACAGA 485
Query 846 GATCCTGCTTGTCTATCGTATAGTTCGGCTATTTTACATCTGAAGGGCTATCTTGCACTG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GATCCTGCTTGTCTATCGTATAGTTCGGCTATTTTACATCTGAAGGGCTATCTTGCACTG 545
Query 906 CAGGCGTATAGAGTAGCACATAAGTTGTGGAAGCAAGGAAGAAAACTATTAGCATTGGCA 965
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CAGGCGTATAGAGTTGCACATAAGTTGTGGAAGCAAGGAAGAAAACTATTAGCATTGGCA 605
Query 966 CTGCAAAGCCGAGTAAGCGAGGTTTTTGGAATCGATATTCATCCCGCTGCAAGAATTGGG 1025
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TTGCAAAGCCGAGTAAGCGAGGTTTTTGGAATCGATATTCATCCCGCTGCAAGAATTGGG 665
Query 1026 AAAGGAATATTGTTGGATCATGGAACTGGTGTGGTCATAGGTGAGACTGCTGTGATAGGC 1085
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 666 AAAGGAATATTATTGGATCATGGAACTGGTGTGGTCATTGGTGAGACTGCTGTGATAGGC 725
Query 1086 GACCGTGTCTCAATTTTGCATGGTGTGACATTAGGAGGAACTGGGAAAGAAACCGGTGAC 1145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 726 GACCGTGTCTCAATTTTGCATGGTGTGACATTAGGAGGAACTGGGAAGGAAACCGGTGAC 785
Query 1146 CGCCATCCAAATATAGGCGACGGTGCTCTTCTTGGAGCATGTGTGACTATACTTGGTAAC 1205
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 786 CGCCATCCAAATATAGGCGATGGTGCTCTTCTTGGAGCATGTGTGACTATACTTGGTAAC 845
Query 1206 ATTAAGATAGGCGCTGGAGCAATGGTAGCTGCTGGTTCGCTTGTGTTAAAGGATGTTCCT 1265
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATTAGGATAGGCGCTGGAGCAATGGTAGCTGCTGGTTCGCTTGTGTTAAAGGATGTTCCA 905
Query 1266 TCGCATAGCATGGTGGCTGGAAATCCAGCAAAACTCATCGGGTTTGTTGATGAGCAAGAT 1325
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 906 TCGCATAGCATGGTGGCTGGAAATCCAGCGAAACTGATCGGGTTTGTTGATGAGCAAGAT 965
Query 1326 CCATCTATGACAATGGAGCATGATGCTACCAGAGAGTTCTTTCAAAATGTAGCTGTTGCT 1385
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CCGTCTTTGACTATGGAGCATGATGCTACCAGAGAGTTCTTTCAAAATGTAGCTGTTGCT 1025
Query 1386 TATAGAGAGACAATACCAAATGGATCTTCAGTTTCAGGGAGTTGCAGGGAAAGGAGACAT 1445
|||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||
Sbjct 1026 TATAGAGAGACAATACCAAATGGATCTTTAGTTTCAGGTAGTTGCAGAGAAAAGAGACAC 1085
Query 1446 TAAAAAGAGAACATGAGATCACCTG 1470
|||||||||||||||||||| ||||
Sbjct 1086 TAAAAAGAGAACATGAGATCTCCTG 1110
> Ahg480656 jgi|Araly1|480656|fgenesh2_kg.3__3357__AT2G17640.1
Length=1271
Score = 809 bits (438), Expect = 0.0
Identities = 738/882 (84%), Gaps = 24/882 (3%)
Strand=Plus/Plus
Query 580 ATTCTAGTTATGACCCAATTTGGGATTCTATAAGAGAAGAAGCTAAGCTTGAGGCAGA-A 638
||||| ||| ||| || ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 292 ATTCTCGTTCTGATCCTATTTGGGATGCTATAAGAGAAGAAGCTAAGCTTGAGGCAGAGA 351
Query 639 GAGGAGCCGGTTTTGAGTAGCTTCTTGTATGCTAGTATCTTGTCGCATGACTGTTTAGAG 698
|| |||| ||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 352 AAG-AGCCTATTTTGAGTAGCTTCTTGTATGCTGGTATCTTGGCACATGACTGTTTAGAG 410
Query 699 CAAGCATT-GAGTTTTGTTCTAGCTAACCGTCTCCAAAACCCTACCTTGTTGGCAACTCA 757
||||| || | |||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 411 CAAGCTTTAGGGTTT-GTTCTAGCCAACCGTCTCCAAAACCCAACCTTGTTGGCAACTCA 469
Query 758 GCTTATGGATATATTTTGCAACGTTATGGTACATGACAGAGGTATTCAAAGCTCGATTCG 817
||| |||| ||||||| |||||| | ||||||| | ||||||| || ||||||||
Sbjct 470 ACTTTTGGACATATTTTATGGTGTTATGATGCATGACAAAAGTATTCAGAGTTCGATTCG 529
Query 818 TCTTGATGTTCAGGCATTCAAAGACAGAGATCCTGCTTGTCTATCGTATAGTTCGGCTAT 877
| |||| |||||||||| |||||| | |||||||||||||| ||||||||||| |||||
Sbjct 530 CCATGATATTCAGGCATTTAAAGACCGGGATCCTGCTTGTCTCTCGTATAGTTCTGCTAT 589
Query 878 TTTACATCTGAAGGGCTATCTTGCACTGCAGGCGTATAGAGTAGCACATAAGTTGTGGAA 937
||||||||||||||| |||| || |||| || || || || || ||||| |||||||
Sbjct 590 TTTACATCTGAAGGGGTATCACGCGTTGCAAGCATACAGGGTTGCGCATAAACTGTGGAA 649
Query 938 -GCAAGGAAGAAAACTATTAGCA-TTGGCACTGCAAAGCCGAGTAAGCGAGGTTTTTGGA 995
| |||| | ||||||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct 650 TG-AAGGGCGGAAACTATTAGCTCTTG-CATTGCAAAGCCGAATAAGCGAGGTTTTTGGA 707
Query 996 ATCGATATTCATCCCGCTGCAAGAATTGGGAAAGGAATATTGTTGGATCATGGAACTGGT 1055
||||| |||||||| || |||||||||||| | ||||||||||||||||||||||||||
Sbjct 708 ATCGACATTCATCCAGCGGCAAGAATTGGGGAGGGAATATTGTTGGATCATGGAACTGGA 767
Query 1056 GTGGTCATAGGTGAGACTGCTGTGATAGGCGACCGTGTCTCAATTTTGCATGGTGTGACA 1115
|||||||| |||||||| ||||||||||| || ||||||| || || |||||||||||
Sbjct 768 GTGGTCATCGGTGAGACCGCTGTGATAGGAAACGGTGTCTCGATCTTACATGGTGTGACT 827
Query 1116 TTAGGAGGAACTGGGAAAG-AAACCGGTGACCGCCATCCAAATATAGGCGACGGTGCTCT 1174
||||||||||| || |||| |||| ||||| || || ||||| ||||| || ||||| |
Sbjct 828 TTAGGAGGAACCGG-AAAGGAAACTGGTGATCGTCACCCAAAAATAGGTGAAGGTGCA-T 885
Query 1175 T-CTTGGAGCATGTGTGACTATACTTGGTAACATTAAG-ATAGGCGCTGGAGCAATGGTA 1232
| |||||||| ||||||||||||||||| ||||| ||| ||||| ||||| |||||||||
Sbjct 886 TGCTTGGAGCTTGTGTGACTATACTTGGGAACAT-AAGTATAGGTGCTGGGGCAATGGTA 944
Query 1233 GCTGCTGGTTCGCTTGTGTTAAAGGATGTTCCTTCGCATAGCATGGTGGCTGGAAATCCA 1292
|| || ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 945 GCCGCGGGTTCACTTGTATTAAAGGACGTTCCTTCGCATAGTGTGGTGGCTGGAAATCCT 1004
Query 1293 GCAAAACTCATC-GGGTT-TGTTGATGAGCAAGATCCATCTAT-GACAATGGAGCATGAT 1349
|| ||||| ||| |||| || || |||||||| |||||| | | ||||| | || |||
Sbjct 1005 GCGAAACTGATCAGGGTCATG--GAAGAGCAAGACCCATCTCTAG-CAATGAAACACGAT 1061
Query 1350 GCTACCAGAGAGTTCTTTCAAAATGTAGCTGTTGCTTATAGAGAGACA-ATACCAAATGG 1408
||||| | ||||||||||| ||||||||| || ||| |||| | || || | || |||
Sbjct 1062 GCTACTAAAGAGTTCTTTCGGCATGTAGCTGATGGTTACAGAGGGGCACATTCTAA-TGG 1120
Query 1409 ATCTTCAGTTTCAGG-G-AGTTGCAGGGAAAGGAGACATTAA 1448
| | ||||||||||| | || | ||| ||||||| ||| |||
Sbjct 1121 ACCATCAGTTTCAGGAGGAGATACAGAGAAAGGACACACTAA 1162
> Ahg491084 jgi|Araly1|491084|fgenesh2_kg.7__517__AT4G35630.1
Length=1657
Score = 193 bits (104), Expect = 4e-48
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand=Plus/Minus
Query 1481 AAGGCGGTTTTCATCATCAATCATAATCACTT-CAAACAAATAACAAAGCTCTTTG-TTT 1538
|||||| |||||||||| |||||| ||||||| ||| ||| |||||||||||||| |||
Sbjct 1657 AAGGCGATTTTCATCATTAATCATCATCACTTAAAAAAAAAAAACAAAGCTCTTTGTTTT 1598
Query 1539 GTTAACAAACTTGTTTTTCCAATTGA-TGGAGAAAGATTTTGATACATTGTTAAACATTA 1597
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1597 GTTAACAAACTTGTTTTTCCAATTGATTGGAGAAAGATTTTGATACATTGCTAAACATTA 1538
Query 1598 TTCATTCTGAAAAGAAGaaaaaaaa 1622
|| |||||| |||||||||| ||||
Sbjct 1537 TTGATTCTGGAAAGAAGAAAGAAAA 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5