BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35650.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491082 jgi|Araly1|491082|fgenesh2_kg.7__515__AT4G35650.1 2100 0.0
> Ahg491082 jgi|Araly1|491082|fgenesh2_kg.7__515__AT4G35650.1
Length=1395
Score = 2100 bits (1137), Expect = 0.0
Identities = 1315/1400 (94%), Gaps = 16/1400 (1%)
Strand=Plus/Plus
Query 1 GTAAATCGCCGAAAACGAAATCGACCTTCGTTGCTCTGAAACCCTAAAAGAAGCTAAATC 60
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 1 GTAAATCGCCGAAAACGAAATCGTCCCTCGTTGCTCTGAAACCCTAAAAGAAGCAAAATC 60
Query 61 TAGCAATGGCGAGAAGATCCGTTTCGATATTTAATCGCCTTCTGGCGAATCCTCCTTCTC 120
|| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 TACCAATGGCGAGAAGATCCGTTTCGATGCTTAGTCGCCTTCTGGCGAATCCTCCTTCTC 120
Query 121 CATTCACATCACTGTCCCGATCCATCACCTACATGCCTAGACCCGGAGATGGAGCTCCAC 180
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 121 CATTCACCGCACTGTCCCGATCCATCACCTACATGCCTAGACCAGGAGACGGAGCTCCAC 180
Query 181 GAACCGTAACCCTAATTCCCGGCGACGGAATCGGACCTTTGGTGACCGGTGCGGTGGAAC 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 181 GAACCGTAACCCTAATTCCCGGCGACGGAATCGGACCTTTAGTGACCGGTGCGGTTGAAC 240
Query 241 AGGTCATGGAAGCGATGCACGCGCCAGTGCATTTCGAGAGATACGAGGTTCTAGGAAACA 300
||||||||||||| |||||||| || |||||||||||| | ||||||||||| || |||
Sbjct 241 AGGTCATGGAAGCTATGCACGCCCCGGTGCATTTCGAGCGGTACGAGGTTCTTGGCCACA 300
Query 301 TGAGAAAAGTCCCTGAAGAAGTGATCGAGTCTGTGAAGAGAAACAAGGTTTGTCTCAAAG 360
|||||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||
Sbjct 301 TGAGAAAAGTCCCTGAAGAAGTAATCGAGTCTGTGAAGAGAAACAAGGTCTGTTTAAAAG 360
Query 361 GTGGATTAGCGACTCCTGTTGGTGGGGGTGTCAGTTCTTTGAATATGCAATTGAGGAAAG 420
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GGGGATTAGCGACTCCTGTTGGTGGTGGTGTCAGTTCTTTGAATATGCAATTGAGGAAAG 420
Query 421 AACTCGATATCTTCGCTTCTCTTGTCAATTGCATCAATGTCCCTGGATTAGTGACGCGAC 480
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||
Sbjct 421 AACTCGATATCTTCGCTTCTCTAGTGAATTGTATCAATGTCCCTGGATTAGTGACACGAC 480
Query 481 ACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCG 540
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 481 ACGAGAATGTTGATATCGTTGTGATTAGAGAGAACACTGAAGGAGAGTATTCAGGTCTCG 540
Query 541 AGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGGTGATAACAAAGTTTTGTTCTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGGTGATAACAAAGTTTTGTTCTG 600
Query 601 AGAGAATAGCGAGATATGCATTTGAGTATGCGTATCTAAACAATAGGAAGAAAGTGACTG 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGAATTGCGAGATATGCATTTGAGTATGCGTATCTAAACAATAGGAAGAAAGTGACTG 660
Query 661 CTGTTCATAAAGCTAACATTATGAAGCTTGCGGATGGGCTCTTCCTTGAATCTTGTAGAG 720
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 661 CTGTTCATAAAGCTAACATCATGAAGCTCGCGGATGGGCTCTTCCTCGAATCTTGTAGAG 720
Query 721 AGGTTGCTAAACATTATTCGGGGATTACTTACAATGAAATAATCGTAGACAATTGCTGTA 780
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 AGGTTGCTAAACACTATCCGGGGATTACTTACAATGAAATAATCGTAGACAATTGTTGTA 780
Query 781 TGCAGCTTGTCGCCAAGCCTGAGCAATTTGATGTCATGGTGACACCTAATTTGTATGGTA 840
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 TGCAGCTTGTCGCCAAGCCCGAGCAATTTGATGTCATGGTGACGCCTAATTTGTATGGTA 840
Query 841 ACCTTATAGCAAACACGGCGGCTGGAATAGCCGGTGGCACTGGAGTGATGCCAGGAGGGA 900
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 ACCTTGTAGCAAACACGGCGGCTGGAATAGCCGGTGGCACTGGAGTGATGCCAGGAGGAA 900
Query 901 ATGTTGGTGCAGAACATGCGATATTCGAGCAAGGTGCATCAGCAGGGAATGTGGGGAATG 960
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 901 ATGTTGGTGCAGAACATGCGATATTTGAGCAAGGCGCATCAGCCGGGAATGTGGGGAATG 960
Query 961 ATAAGATGGTGGAACAGAAGAAAGCGAATCCGGTGGCTCTACTTCTCTCGTCGGCTATGA 1020
||||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 961 ATAAGATAGTGGAACAGAAGAAAGCTAATCCGGTGGCTCTACTTCTCTCATCAGCAATGA 1020
Query 1021 TGCTAAGACATCTCCGGTTTCCTACTTTTGCTGATCGGCTTGAAACAGCAGTGAAACAAG 1080
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGCTTAGACATCTCCGGTTTCCTACTTTTGCTGATCGGCTTGAAACAGCAGTGAAACAAG 1080
Query 1081 TGATTAAAGAAGGAAAATATAGAACAAAAGATCTTGGAGGAGATTGTACCACGCAGGAAG 1140
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGATTCAAGAAGGAAAATACAGAACAAAAGATCTTGGAGGAGATTGTACCACGCAGGAAG 1140
Query 1141 TTGTTGATGCTGTCATAGCAGCTCTTGAGTGAAACCATGTGAGCTTCTCTGCTTCTGCTT 1200
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTGTTGATGCGGTCATAGCAGCTCTTGAGTGAAACCATGTGAGCTTCTCTGCTTCTGCTT 1200
Query 1201 GCTTCTTCTTTCGTCTTTTTCATTTCAACTAAGAGAAAAGtgttggttttctctgttttg 1260
||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1201 GCTCCTTCTTTCGTCTTTTTCATTTAAACTAAGAAAAAAGTGTTGGTTTTCTCTGTTTTA 1260
Query 1261 cgttgctattttttg-tttcttgattcatttt--t-gttc-tctttttgA-TT---A--A 1309
||||||| |||||| |||||||||||||||| | |||| | |||||| || | |
Sbjct 1261 CGTTGCTCTTTTTTTATTTCTTGATTCATTTTACTAGTTCAT-TTTTTGTCTTTTGATGA 1319
Query 1310 TATCCGATCTCACGTTTGAGCATGAGCTCTATGTTATAAAATAAAATCAATAAGGACAGA 1369
||| ||||||||||| ||||| |||||||||||||||| |||||||||||||| || ||
Sbjct 1320 TATTCGATCTCACGTCTGAGCTTGAGCTCTATGTTATACAATAAAATCAATAAAGA--GA 1377
Query 1370 CAGAAGCAATGTTGTTTATC 1389
||||||||||||||||||
Sbjct 1378 --GAAGCAATGTTGTTTATC 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5