BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G35655.1

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944321 jgi|Araly1|944321|scaffold_700550.1                        339    6e-93


> Ahg944321 jgi|Araly1|944321|scaffold_700550.1
Length=247

 Score =  339 bits (183),  Expect = 6e-93
 Identities = 199/207 (96%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  1    ATGGCATCGAATAGTGACGCAAGGCCTTTGCCAAAATTCGGAGAATGGGATGTGAATGAT  60
            |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  21   ATGGCATCAAATAGTGAAGCAAGGCCTCTGCCAAAATTCGGAGAATGGGATGTGAATGAT  80

Query  61   CCGGCGACGGCAGAGGGATTCACCGTTATATTTAGTAAAGCCGGCGAGGATaaaaaaaCA  120
            |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct  81   CCGGCGACGGCAGAGGTATTCACTGTTATATTTAGTAAAGCCGGCGAGGATAAAAAAACA  140

Query  121  GGTCGGAGCTCTAGCAAGGCACCTTCACAGAGAAAACAAGACGGCGTTAAACCAACCAAG  180
            ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  141  GGTCGTAGCTCCAGCAAGGCACCTTCACAGAGGAAACAAGACGGCGTTAAACCAACCAAG  200

Query  181  AAATGGCTCTGTTTTACTTTTTCTTGA  207
            |||||||||||||||||||||||||||
Sbjct  201  AAATGGCTCTGTTTTACTTTTTCTTGA  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7026640024


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5