BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35660.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491080 jgi|Araly1|491080|fgenesh2_kg.7__513__AT4G35660.1 1718 0.0
> Ahg491080 jgi|Araly1|491080|fgenesh2_kg.7__513__AT4G35660.1
Length=1153
Score = 1718 bits (930), Expect = 0.0
Identities = 1091/1166 (94%), Gaps = 22/1166 (2%)
Strand=Plus/Plus
Query 11 AAAGCTTGACGTTGCTCCATTTATAACCACAAAGAGATTATTAAAT---TT-AGCAAAAA 66
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1 AAAGCTTGACGTTGCTCCATTTATAACCACAAAGAGATTATTAAATAAATTAAGCAAAAG 60
Query 67 GGGATAATTGTGCAGATATCCTCTTTATAAG--GTTTTTTAAACACATGCCCAATTTGCT 124
|||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||
Sbjct 61 GGGATAATTGTGCAAATATCCTCTTTATAAGTTTTTTTTTTAACACATGCCCAATTTGCT 120
Query 125 CTTACATTAAAACCTTTTTAATTAAAGGGTTATTTTGGATTTATCTGTTAAGTTCTCCTC 184
|||||||||||||| ||| ||||||||||||||||||||| ||||||||||| || ||
Sbjct 121 CTTACATTAAAACC--TTT--TTAAAGGGTTATTTTGGATTTCTCTGTTAAGTTTTCTTC 176
Query 185 TATTATATACCTTTGAAGTCTCTGAACCTTTATAACCCACCAAAACCCATTTCCAAGTTT 244
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 177 TATTATATACC-TTGGAGTCTCTGAACCTTTATAACCCACCAAAAACCATTTCCAAGTTT 235
Query 245 AAGGCTTTTTGACTTCTCTGTTTGCTTCAGAGCTTGG--AAATGGCTGAATCATCATCAT 302
||| | |||||| |||||||||||||||||||||||| ||||||| | | ||||||||
Sbjct 236 AAGTC-TTTTGATTTCTCTGTTTGCTTCAGAGCTTGGAAAAATGGCAG-A--ATCATCAT 291
Query 303 CCTCTGTAGCGACTACGCATGTACCTGCTAGGTCTATTAGTTTGCCTACAAGACTAATCC 362
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CCTCTGCGGTGACTACGCATGTACCTGCTAGGTCTATTAGTTTGCCTACAAGACTAATCC 351
Query 363 ATCCTAAAGCACAGAGAGTTGAAGAAGAACTGAAAAAGATTCAAGCTTTAAACTCTTCTT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATCCTAAAGCACAGAGAGTTGAAGAAGAACTGAAAAAGATTCAAGCTTTAAACTCTTCTT 411
Query 423 CATCAGCTTCTTCTCGGATCCAACTTGGACTTGCCAAGCTCGTTGAGCTCTATGACTTTG 482
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 412 CATCAGCTTCTTCTAGGATCAAACTTGGACTTGCCAAGCTCGTTGAGCTCTATGACTTTG 471
Query 483 TCAATGAACAAGTCATAAGTTCTCCTCAAGGCCAACAAGCTCTTCGCCTTTGTCGCAACA 542
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TCAATGAACAAGTCATATGTTCTCCTCAAGGCCAACAAGCTCTTCGCCTTTGTCGCAACG 531
Query 543 GGAAACTTGTGGAAGACGCTCTTGATGAATCCATCGTGTTACTAGATGTCTCTGACTTCA 602
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 532 GGAAACTTGTGGAAGACTCTCTTGATGAATCCATCTTGTTACTAGATGTCTCTGACTTCA 591
Query 603 CAAGAGACTTGATAGGAACACTCATGGAGCATATTCAAGAACTTCAATCCGCTTTACGTA 662
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 592 CAAGAGACTTGATAGGAACACTCATGGAGCAAATTCAAGAACTTCAATCTGCTTTACGTA 651
Query 663 GACGCAGAGGAAATCTCTCTTCCGTTCAGTCCGAGATCCGAAGTTACATTAGCTTTCACA 722
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 652 GACGCAGAGGAAATCTCTCTTCCGTTCAGTCCGAGATCCGAACTTACATTAGCTTTCAGA 711
Query 723 AGAAATCCAAGACCGAAGCAGCGAGACAAGTTAAATCCCTTGCAAGGAGACAAACAAAGA 782
|||| | ||||| || ||||| |||||| |||||||||||||||||| ||||| |||||
Sbjct 712 AGAAGTTCAAGAACGCAGCAGATAGACAACTTAAATCCCTTGCAAGGACACAAAGAAAGA 771
Query 783 AAAAAGCTTGGGTTATCAAACAATC-CGGTGGTCTTGATGAACATTCTTCTATGGTCTCC 841
|||||| | ||||||||||||||| || || ||||||| |||||||||| |||||||||
Sbjct 772 AAAAAGATCCGGTTATCAAACAATCTCG-TGATCTTGATCAACATTCTTCAATGGTCTCC 830
Query 842 AATATTCTAAGGCAATCAAACGCATCGACGATCTCTATTTTACAGTCACTCTTGCAGTTT 901
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 831 AACATTCTAAGGCAATCAAACGCGTCGACGATCTCTATTTTGCAGTCACTCTTGCAGTTT 890
Query 902 CTTTCTACTTCCGGTGAGAACAACGAGAAGAAAAATGGTGAAATTGGATGTGTAGATAAC 961
|||||| |||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 891 CTTTCTTCTTCCGGTGAGAAC--C-AGAAGAAGAATGGTGAAATTGGATGTGTAGATAAC 947
Query 962 TCGATGATCCGTTCTTTCTTTGGAAGAATCATCGGTAGGAAGATGGTGAAGGAGATTGAT 1021
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 948 TCGATGATCCGTTCTTTCTTTGGAAGAATCATCGGTAGGAAGATCGTGAAGGACATTGAT 1007
Query 1022 GCGCAAACAATCCTCGGGAGATTAGCTATGGTTAATGTGAGCCTTGAGGCAATTAAGGAT 1081
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1008 GCGCAAACAATCCTCGGGAAATTAGCTATGGTTAATGCGAGCCTTGAAGCAATTAAGGAT 1067
Query 1082 GAGTTAAGTTACTTATCTAGACGACTTATTCAACATAGAGCGTCTCTCTTGAACATTGTT 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GAGTTAAGTTACTTATCTAGACGACTTATTCAACATAGAGCGTCTCTCTTGAACATTGTT 1127
Query 1142 ACTCTATAACAAAAATAATTTTGTAT 1167
|||||||||||| || | ||||||||
Sbjct 1128 ACTCTATAACAATAAGAGTTTTGTAT 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5