BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35660.1 Length=1196 Score E Sequences producing significant alignments: (Bits) Value Ahg491080 jgi|Araly1|491080|fgenesh2_kg.7__513__AT4G35660.1 1718 0.0 > Ahg491080 jgi|Araly1|491080|fgenesh2_kg.7__513__AT4G35660.1 Length=1153 Score = 1718 bits (930), Expect = 0.0 Identities = 1091/1166 (94%), Gaps = 22/1166 (2%) Strand=Plus/Plus Query 11 AAAGCTTGACGTTGCTCCATTTATAACCACAAAGAGATTATTAAAT---TT-AGCAAAAA 66 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1 AAAGCTTGACGTTGCTCCATTTATAACCACAAAGAGATTATTAAATAAATTAAGCAAAAG 60 Query 67 GGGATAATTGTGCAGATATCCTCTTTATAAG--GTTTTTTAAACACATGCCCAATTTGCT 124 |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||| Sbjct 61 GGGATAATTGTGCAAATATCCTCTTTATAAGTTTTTTTTTTAACACATGCCCAATTTGCT 120 Query 125 CTTACATTAAAACCTTTTTAATTAAAGGGTTATTTTGGATTTATCTGTTAAGTTCTCCTC 184 |||||||||||||| ||| ||||||||||||||||||||| ||||||||||| || || Sbjct 121 CTTACATTAAAACC--TTT--TTAAAGGGTTATTTTGGATTTCTCTGTTAAGTTTTCTTC 176 Query 185 TATTATATACCTTTGAAGTCTCTGAACCTTTATAACCCACCAAAACCCATTTCCAAGTTT 244 ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 177 TATTATATACC-TTGGAGTCTCTGAACCTTTATAACCCACCAAAAACCATTTCCAAGTTT 235 Query 245 AAGGCTTTTTGACTTCTCTGTTTGCTTCAGAGCTTGG--AAATGGCTGAATCATCATCAT 302 ||| | |||||| |||||||||||||||||||||||| ||||||| | | |||||||| Sbjct 236 AAGTC-TTTTGATTTCTCTGTTTGCTTCAGAGCTTGGAAAAATGGCAG-A--ATCATCAT 291 Query 303 CCTCTGTAGCGACTACGCATGTACCTGCTAGGTCTATTAGTTTGCCTACAAGACTAATCC 362 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 CCTCTGCGGTGACTACGCATGTACCTGCTAGGTCTATTAGTTTGCCTACAAGACTAATCC 351 Query 363 ATCCTAAAGCACAGAGAGTTGAAGAAGAACTGAAAAAGATTCAAGCTTTAAACTCTTCTT 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 ATCCTAAAGCACAGAGAGTTGAAGAAGAACTGAAAAAGATTCAAGCTTTAAACTCTTCTT 411 Query 423 CATCAGCTTCTTCTCGGATCCAACTTGGACTTGCCAAGCTCGTTGAGCTCTATGACTTTG 482 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 412 CATCAGCTTCTTCTAGGATCAAACTTGGACTTGCCAAGCTCGTTGAGCTCTATGACTTTG 471 Query 483 TCAATGAACAAGTCATAAGTTCTCCTCAAGGCCAACAAGCTCTTCGCCTTTGTCGCAACA 542 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 472 TCAATGAACAAGTCATATGTTCTCCTCAAGGCCAACAAGCTCTTCGCCTTTGTCGCAACG 531 Query 543 GGAAACTTGTGGAAGACGCTCTTGATGAATCCATCGTGTTACTAGATGTCTCTGACTTCA 602 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 532 GGAAACTTGTGGAAGACTCTCTTGATGAATCCATCTTGTTACTAGATGTCTCTGACTTCA 591 Query 603 CAAGAGACTTGATAGGAACACTCATGGAGCATATTCAAGAACTTCAATCCGCTTTACGTA 662 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 592 CAAGAGACTTGATAGGAACACTCATGGAGCAAATTCAAGAACTTCAATCTGCTTTACGTA 651 Query 663 GACGCAGAGGAAATCTCTCTTCCGTTCAGTCCGAGATCCGAAGTTACATTAGCTTTCACA 722 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 652 GACGCAGAGGAAATCTCTCTTCCGTTCAGTCCGAGATCCGAACTTACATTAGCTTTCAGA 711 Query 723 AGAAATCCAAGACCGAAGCAGCGAGACAAGTTAAATCCCTTGCAAGGAGACAAACAAAGA 782 |||| | ||||| || ||||| |||||| |||||||||||||||||| ||||| ||||| Sbjct 712 AGAAGTTCAAGAACGCAGCAGATAGACAACTTAAATCCCTTGCAAGGACACAAAGAAAGA 771 Query 783 AAAAAGCTTGGGTTATCAAACAATC-CGGTGGTCTTGATGAACATTCTTCTATGGTCTCC 841 |||||| | ||||||||||||||| || || ||||||| |||||||||| ||||||||| Sbjct 772 AAAAAGATCCGGTTATCAAACAATCTCG-TGATCTTGATCAACATTCTTCAATGGTCTCC 830 Query 842 AATATTCTAAGGCAATCAAACGCATCGACGATCTCTATTTTACAGTCACTCTTGCAGTTT 901 || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 831 AACATTCTAAGGCAATCAAACGCGTCGACGATCTCTATTTTGCAGTCACTCTTGCAGTTT 890 Query 902 CTTTCTACTTCCGGTGAGAACAACGAGAAGAAAAATGGTGAAATTGGATGTGTAGATAAC 961 |||||| |||||||||||||| | ||||||| ||||||||||||||||||||||||||| Sbjct 891 CTTTCTTCTTCCGGTGAGAAC--C-AGAAGAAGAATGGTGAAATTGGATGTGTAGATAAC 947 Query 962 TCGATGATCCGTTCTTTCTTTGGAAGAATCATCGGTAGGAAGATGGTGAAGGAGATTGAT 1021 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 948 TCGATGATCCGTTCTTTCTTTGGAAGAATCATCGGTAGGAAGATCGTGAAGGACATTGAT 1007 Query 1022 GCGCAAACAATCCTCGGGAGATTAGCTATGGTTAATGTGAGCCTTGAGGCAATTAAGGAT 1081 ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| Sbjct 1008 GCGCAAACAATCCTCGGGAAATTAGCTATGGTTAATGCGAGCCTTGAAGCAATTAAGGAT 1067 Query 1082 GAGTTAAGTTACTTATCTAGACGACTTATTCAACATAGAGCGTCTCTCTTGAACATTGTT 1141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 GAGTTAAGTTACTTATCTAGACGACTTATTCAACATAGAGCGTCTCTCTTGAACATTGTT 1127 Query 1142 ACTCTATAACAAAAATAATTTTGTAT 1167 |||||||||||| || | |||||||| Sbjct 1128 ACTCTATAACAATAAGAGTTTTGTAT 1153 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44641935807 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5