BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35670.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944318 jgi|Araly1|944318|scaffold_700547.1 1882 0.0
> Ahg944318 jgi|Araly1|944318|scaffold_700547.1
Length=1231
Score = 1882 bits (1019), Expect = 0.0
Identities = 1132/1187 (95%), Gaps = 5/1187 (0%)
Strand=Plus/Plus
Query 1 ATGAAAACCATATTGGATATTTCGATCTTGATAAATTTTCTCTGTTTTGGTATTGTATAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 23 ATGAAAACCATATTGGATATTTCGATCTTGATAAATTTTCTCTGTTTTGGTATTGTGTAC 82
Query 61 GGCAAAAATTACAACGTACTCAATTTTGATGCCAAAGGAGATGGTCAAACTGATGATTCA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 GGCCAAAATTACAACGTACTCAATTTTGATGCCAAAGGAGATGGTCAAACTGATGATTCA 142
Query 121 GAGGCTTTTCTACAAGCATGGACTGCTGCATGTGGCGGAGACGGGGACATAAAAACACTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AAGGCTTTTCTACAAGCATGGACTGCTGCATGTGGCGGAGACGGGGACATAAAAACACTT 202
Query 181 CTTATACCTTCCGGCAAAACATTTTTACTTCAACCTACTGTGTTTCAAGGCCCATGTAAA 240
||||| ||||| | |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 203 CTTATTCCTTCTGACAAAACATTTTTACTTCAACCTACCGTGTTCCAAGGCCCATGTAAA 262
Query 241 TCTAGTTCGATAAAAGTTCAGTTGGATGGCACCATCGTTGCACCTAGTGACAAATTCGCA 300
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 263 TCTAGTTCGATAAAAGTTCAGTTGGATGGCGCCATCGTTGCACCTAGTGACAAAGTCGCA 322
Query 301 TGGTCGGACCCCATCTCCCGAATGTGGATCAAATTTTCAACTGTGTCTGGCCTAATAATC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 323 TGGTCGGACCCCATCTCCCGAATGTGGATCAAATTTTCAACTGTGTCTGGTCTAACAATC 382
Query 361 GTTGGTTCGGGAACCATTGATAGTCGTGGTTCATCTTTTTGGGAGCTTAATCTGAAAGCT 420
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 383 GTTGGTTCGGGAACGATTGATAGTCGTGGTTCATCTTTTTGGGAGCTAAATCTGAAAGCT 442
Query 421 TCTCAACGACCTACAGCATTACATATCAGCAAATGTGACAACCTTAGGATAAACGGGATA 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 443 TCTCAACGACCTACAGCATTACATATCAGCAAATGTGACAACCTGAGGATAAACGGGATA 502
Query 481 ACATCGATTGATAGTCCAAAAAATCATATATCAATCAAAACATGTAATACTGTTGCAATA 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 ACCTCGATTGATAGTCCAAAAAATCATATATCAATCAAAACATGTAATACTGTTGCAATA 562
Query 541 TCAAATATAAATCTTTTTGCACCTGAGACAAGTCCCAATACAGATGGGATTGATATAAGT 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 563 TCAAATATAAATCTTTTTGCACCCGAGACAAGTCCCAATACAGATGGGATTGATATAAGT 622
Query 601 GACTCGACTAATATCAACATATTTGACTCTACAATTCAAACTGGTGACGATTGTATAGCA 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 623 GACTCGACTAATATCAACATATTTGACTCTACAATTCAAACCGGTGACGATTGTATAGCA 682
Query 661 ATCAATAGTGGAAGTTCTAATATTAACATCACTGGAATCAATTGTGGACCTGGTCATGGG 720
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 683 ATCAACAGTGGAAGTTCTAATATTAACATCACTGGAATTAACTGTGGACCTGGTCATGGG 742
Query 721 ATAAGTGTGGGGAGTTTAGGAGCAGGTGGAGCAGAAGCTAAAGTGAGTGATGTTCAAGTG 780
||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 743 ATAAGTGTGGGAAGTCTAGGAGCGGGTGGAGCAGAGGCTAAAGTGAGTGATGTTCAAGTG 802
Query 781 ACACATTGCACTTTCAATCAGACGACGAATGGAGCTAGAATCAAGACATGGCTGGGTGGA 840
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 ACTCACTGCACTTTCAATCAGACGACGAATGGAGCTAGAATCAAGACATGGCTGGGTGGA 862
Query 841 CAAGGATATGCAAGAAACATAAGTTTTACGGACATCACACTCGTTAACACAAAAAATCCA 900
|||||||||||||||||||||||||||||||| || || ||| |||||||||||||||||
Sbjct 863 CAAGGATATGCAAGAAACATAAGTTTTACGGATATTACGCTCATTAACACAAAAAATCCA 922
Query 901 ATTATAATCGACCAACATTATATAGATAAAGGAC-GTCTT-AC--AGAGGAATCAGCAGT 956
|| |||||||||||||| ||||||||||||||| | ||| | |||||||||| ||||
Sbjct 923 ATAATAATCGACCAACAATATATAGATAAAGGAAAG-CTTGATGGAGAGGAATCATCAGT 981
Query 957 AGCTATTAGTAATGTAAAATTTGTCGATTTTCGCGGAACATCGTCAAATAAAAATGCTAT 1016
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 982 GGCAATTAGTAATGTAAAATATGTCGATTTTCGCGGAACATCGTCAAATAAAAATGCTAT 1041
Query 1017 AACGCTTAAATGTAGCGAAACTACACATTGTGTAGACGTCGTTATGGATGGAATTGATAT 1076
||||||||||||||| ||||||||||||||| |||| || || |||||||||||||||||
Sbjct 1042 AACGCTTAAATGTAGTGAAACTACACATTGTATAGATGTTGTCATGGATGGAATTGATAT 1101
Query 1077 TACCATGGCAAATGGAGGAAAGCCTAAAGTTAATTGTCAATATGTTGATGGAGAGTCCAG 1136
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1102 TACCATGGCGAATGGAGGAAAACCTAAAGTTAATTGCCAATATGTTGATGGAGAGTCAAG 1161
Query 1137 TGACACTGATTTGATGCGAGACTGCTTTAAAAATAACACTAGTTCTT 1183
||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1162 TGATACTGATTTGATGCGAGACTGTTTTAAAAATAACACTAGTTCTT 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5