BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35680.1
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944317 jgi|Araly1|944317|scaffold_700546.1 1334 0.0
Ahg907972 jgi|Araly1|907972|Al_scaffold_0002_1053 387 2e-106
Ahg943584 jgi|Araly1|943584|scaffold_604128.1 202 9e-51
> Ahg944317 jgi|Araly1|944317|scaffold_700546.1
Length=988
Score = 1334 bits (722), Expect = 0.0
Identities = 871/942 (92%), Gaps = 13/942 (1%)
Strand=Plus/Plus
Query 183 Gaaaaaa-aTGGAAGGTCTCGATTCAGTCTTCTTGTCTAATCAAACCACACACCAACCGG 241
||||||| ||||||||| | |||| |||||||||||| |||||||||||||||||||||
Sbjct 13 GAAAAAACATGGAAGGTTTAGATTTGGTCTTCTTGTCTGATCAAACCACACACCAACCGG 72
Query 242 TTCGATCTGCGAGTCTTCCTTCAAGAATCCATCCACTCTCTGTTAA-ACTCAGAACAGCT 300
|||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 73 TTCGATCTTTGAGTCTTCCTTCAAGAATCCATCCACTCTCTGTTAAGA-TCAGAGCAGCC 131
Query 301 TTGAGCCGGCTCAGTATCTGGCGGAGATCTTCTTCCTCAATCTCGGTTTCAGCTTCGTTT 360
|||| |||||||||| ||||||||||||||||||||||||||||| | || |||||||||
Sbjct 132 TTGAACCGGCTCAGTTTCTGGCGGAGATCTTCTTCCTCAATCTCGATATCCGCTTCGTTT 191
Query 361 GGGTATGAGACGGTTCTCGTTGGACTCGTGAACCTCACTGAGCTCTACGGTTGCGTGCAT 420
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 192 GGGTATGAGACGGTTCTCGTTGGACTCGTGGACCTCACTGAGCTCTACAGTTGCGTGCAT 251
Query 421 GAGCTACTTGAGTCTCCTTACGTGAAACACACTCTTCTTCATCACCAGGAAGGG--A-AA 477
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 252 GAGCTACTTGAGTCTCCTTACGTGAAACACACTCTTCTTCATCACCAGAAAGGGAAACAA 311
Query 478 CTTCTGGACGAATCTTTAGATGGATCTGTTCTGTTGCTCGACGTGTATGAGGGGACACGG 537
|||||||| || |||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 312 CTTCTGGAAGATTCTTTAGATGGATCTGTTCTGTTGCTCGACGTGTATGAGGCCACAAGG 371
Query 538 GAGGTGATTGTAGCGATGAGAGAACACGTGACGAATCTCAAATCTGCTCTTCGTAGGAAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GAGGTGATTGTAGCGATGAGAGAACACGTGACGAATCTCAAATCTGCTCTTCGTAGGAAA 431
Query 598 GGTAGCTTAGAGAAGGAGGCGAAAGCATACTTTAACTTGCGGAAGAAGGCAAAGAAAGAA 657
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 432 GGAAGCGTAGAGAAGGAGGCGAAAGCATACGTTAACTTGCGGAAGAAGGCAAAGAAAGAA 491
Query 658 ATCTCTAAACAGATTAATGCACTCAAGAAAATGGAAACCAGAGATATTTCCACCAACACA 717
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 492 ATCTCTAAACAGATCAATGCACTCAAGAAAATGGAAACTAGAGATATTTCCACCAACATA 551
Query 718 GATCAAGATTCAGCGATAGCATCCACGAGTGTTCTGAGAGAGACAATCCAAATCACTGTC 777
||||| |||||| ||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 552 GATCACGATTCAACGATAGCATCCACGATTGTTCTGAGAGAGACAATTGAATTCACTGTC 611
Query 778 TCGATGTTCAGACATCTTTTGTTGTTCCTATCAACAATACCACCACCACCATCGCC--CG 835
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 612 TCGATTTTCAGACATCTTTTGTTGTTCCTATCAACAATACCACCACCACCATCTCCAACG 671
Query 836 -CAATATTCAAGACTACCATAGGGCTTTTGTCGATTCCTTTCGTATCGCCATCATTATCA 894
|| | ||||||| ||||| ||| ||||| | |||||||||||||| | |||||||||
Sbjct 672 AAAAAAATCAAGACCACCATTGGGTTTTTGCCTTTTCCTTTCGTATCGTCGTCATTATCA 731
Query 895 GATAAATCTCTGATTCTGATAAAGGAAATGAAGAGTCTTGATGATGTCTTTCTGGGTTCT 954
||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 732 GATAAATCTCTGAATCTGATAAAAGAAATGAAGAGTCTTGATGAAGTTTTTCTGGGTTCT 791
Query 955 ATTTTGGATTCGAG-AAAAACTTTATTCGAAGTAGAAACAATGG-AGAACGAGAAGATGA 1012
||||||||| |||| |||| |||| |||||||| || |||| || |||| ||||||||||
Sbjct 792 ATTTTGGATCCGAGTAAAACCTTT-TTCGAAGTCGAGACAA-GGCAGAAGGAGAAGATGA 849
Query 1013 GGAGAGATGTAGTTGAAGATGGTTTTCGTGATCTGGAGGCAGAACTGGACTCTGTTTCCA 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GGAGAGATGTAGTTGAAGATGGTTTTCGTGATCTGGAGGCAGAACTGGACTCTGTTTCCA 909
Query 1073 AGTGTCTAGTTAAAAACAGAGTTTTGTTCCTTAACATCCTCA 1114
||| | ||||||||||||||||||||||||||||||||||||
Sbjct 910 AGTCTTTAGTTAAAAACAGAGTTTTGTTCCTTAACATCCTCA 951
> Ahg907972 jgi|Araly1|907972|Al_scaffold_0002_1053
Length=327
Score = 387 bits (209), Expect = 2e-106
Identities = 275/305 (90%), Gaps = 12/305 (4%)
Strand=Plus/Plus
Query 1402 AGA-CCTGATAACTTCTCTAAAGAACTTGTTGGAGATACTCGAAGAGAACAACGGCCTGT 1460
||| |||||||||||| ||||| ||||| ||||||| |||||||||| |||||| |||
Sbjct 30 AGACCCTGATAACTTCCCTAAACAACTTCTTGGAGAAACTCGAAGAG---AACGGCATGT 86
Query 1461 GAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCT 1520
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 TAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCT 146
Query 1521 TGA-GTCTAAGTTTAA-GACTCAAGGCAATGAAGAGAAAGAAGACGGAGAAGATGATGAA 1578
||| | |||||| ||| | || |||| || |||||||||||||| |||||||||||||||
Sbjct 147 TGAAG-CTAAGTCTAATG-CTGAAGGTAAGGAAGAGAAAGAAGAAGGAGAAGATGATGAA 204
Query 1579 CAAGTTGTGGAATCAGAAGGAGAAGAATCAGATAACGGAGATTATGATCAGAATCAAGAC 1638
|||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 205 GAAGTTGAGGAATCAGAAGGAGAAGAATCTGATAACAGAGATTATGATCAGAATCAAGAC 264
Query 1639 TTTGATGATGATGAA-GACGATTATAATCATGAGGAGGATGGTGGATTT-GAAGAGGTGT 1696
|||||||||||| || |||||||||||||| | ||| ||||||| |||| ||||||||||
Sbjct 265 TTTGATGATGAT-AATGACGATTATAATCAAGCGGATGATGGTG-ATTTTGAAGAGGTGT 322
Query 1697 ATTAA 1701
|||||
Sbjct 323 ATTAA 327
> Ahg943584 jgi|Araly1|943584|scaffold_604128.1
Length=563
Score = 202 bits (109), Expect = 9e-51
Identities = 128/136 (94%), Gaps = 5/136 (4%)
Strand=Plus/Plus
Query 1402 AGACCTGATAACTTCTCTAAAGAACTTGTTGGAGATACTCGAAGAGAACAACGGCCTGTG 1461
||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 321 AGACCTGATAACTTCCCTAAAGAACTTCTTGGAGATACTCGAAGAG---AACGTCCTGTG 377
Query 1462 AAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCTT 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCTT 437
Query 1522 GA-GTCTAAGTTTAAG 1536
|| | |||||||||||
Sbjct 438 GAAG-CTAAGTTTAAG 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73666533830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5