BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35690.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944315 jgi|Araly1|944315|scaffold_700544.1 1229 0.0
Ahg491077 jgi|Araly1|491077|fgenesh2_kg.7__510__AT4G35710.1 704 0.0
Ahg931629 jgi|Araly1|931629|scaffold_304086.1 211 8e-54
> Ahg944315 jgi|Araly1|944315|scaffold_700544.1
Length=892
Score = 1229 bits (665), Expect = 0.0
Identities = 819/894 (92%), Gaps = 7/894 (1%)
Strand=Plus/Plus
Query 62 aaagcatattatataaaaaaaaaTGTCGAATATGCTCGTCAAGAATCAACTAAGATCTAT 121
|||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAAGCATA-T-TATAAAAAAAAATGTCGAATATGATCGTCAAGAATCAACTAAGATCTAT 58
Query 122 AAGCTTACCTTCAAGCTCGCATCCAAGCACGACCGGTATCGAGGAATCTCTTAACAAGGT 181
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 59 AAGCTTACCTTCAAGATCGCATCCAAGCACGACCGGGGTCGAGGAAGCTCTTAACAAGGT 118
Query 182 CAAAACGATTAACACCATGACGGGTTCGTCCGAATCAGTCTTGATGGGCTTGGAGGGTTT 241
|| |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 119 TAATTCGATTAACACCACGACTGGTTCGTCCGAATCAGTCTTGATGGGCTTGGCGGGTTT 178
Query 242 GGAGGAGCTCTACAATTGTACGGAAGATTTTCTGAAAATGGGCTCAACGCAACGGGTTAT 301
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 179 GGAGGAGCTCTACAATTGTACGGAGGAGTTTCTGAAAATGGGCTCAACGCAACGGGTTTT 238
Query 302 GTCATCATCTGATGGATCCGAGTTTATGGAGGAGATGCTTGACGGTTCGTTGAGGCTAAT 361
||| ||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 239 GTCGTCA---GATGGATCTGAGTTCATGGAGGAAATGCTTGACGGTTCGTTGAGGCTAAT 295
Query 362 GGATATATGCAGTGTCTCGAGGGATCTCATGGTGGAGACTCAAGAGCATGTTCGTGGTGT 421
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 296 GGATATATGCAGCGTTTCGAGGGATCTCATGGTGGAGACTCACGAGCATGTTCGTGGTGT 355
Query 422 TCAATCATGTGTCAGGAGAAAGAAAGTAGTCGGAGGAGAAGACCAACTCGATGTCGCCGT 481
|||||||||| | |||||||||||| ||| |||||||| ||||||||||||||| ||| |
Sbjct 356 TCAATCATGTCTTAGGAGAAAGAAATTAGCCGGAGGAGGAGACCAACTCGATGTTGCCAT 415
Query 482 CGCGGGGTATGTCGGATTTAGAAAGAACATGAGAAAAGAAGCTAAGAGGCTTCTTGGATC 541
| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 416 CTCGGGGTATGTCGGATTTAGAAAGAACATGAGGAAAGAAGCTAAGAAGCTTCTTGGATC 475
Query 542 TTTGAAGAACATTGATGGAGGTTTAAGTTCATCATCATCAGTAAATAATGGTGAGCAAGA 601
|||||||||||||||||||| ||||||||||| | ||| |||||||||||| || ||||
Sbjct 476 CTTGAAGAACATTGATGGAGGATTAAGTTCATCTTTATCGGTAAATAATGGTCAGAAAGA 535
Query 602 AGAACATCTTGTGGTGGTTGTAGACGCCATGAGACAAGTAGTTTCCGTTAGCGTCGCGGT 661
|||||||||||||| |||| | | || |||||| |||||||||||||||||||| ||||
Sbjct 536 AGAACATCTTGTGGCGGTTACAAATGCAATGAGAAAAGTAGTTTCCGTTAGCGTCTCGGT 595
Query 662 GTTGAGGTCGTTTTTGGAATTCTTATCCGGACGACGACAAAGTAACATTAAGAGCAAGCT 721
|||||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||
Sbjct 596 GTTGAGGTCGTTTTTGGAGTTCTTATTGGGAAGAAAACAAAGTAACATTAAGAGCAAGCT 655
Query 722 GGCTTCGGTACTAAAGAAAAAGAAGGTTCACCATGTTGAGGAGACCAAGAACGAGTTGGA 781
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 656 GGCTTCGGTACTAAAGAAAAAGAAGGTTCATCATGTTGAGGAGACCAAGAACGAGTTGGA 715
Query 782 GAATTTGGATCTC-GAGATATTCTGTTCTCGTAATGATCTACAAAAGAAGCTTGAGGAAG 840
|| ||||||| || | ||||| ||| ||| || ||||||| ||| ||||||||||||| |
Sbjct 716 GAGTTTGGAT-TCGGCGATATGCTGCTCTTGTGATGATCTTCAAGAGAAGCTTGAGGAGG 774
Query 841 TTGAGATGAGCATTGATGGATTCGAGAAGAAACTAGAAGGACTATTTCGAAGGTTGATAA 900
||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 775 TTGAGATGAGCATCGATGGGTTCGAGAAGAATCTAGAAGGGTTATTTCGAAGGTTGATAA 834
Query 901 GAACACGAGCCTCGCTTCTCAACATAATATCTCATTAGGTTTTAAAGTATTCAT 954
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 835 GAACACGAGCCTCGCTTCTCAACATAATATCTCATTAGATTTTAAAGTATTCAT 888
> Ahg491077 jgi|Araly1|491077|fgenesh2_kg.7__510__AT4G35710.1
Length=843
Score = 704 bits (381), Expect = 0.0
Identities = 723/879 (82%), Gaps = 60/879 (7%)
Strand=Plus/Plus
Query 84 ATGTCGAATATGCTCGTCAAGAATCAACTAAGATCTATAAGCTTACCTTCAAGCTCGCAT 143
||| |||||||| | | ||||| ||| ||||||||||||| |||||||| || ||||||
Sbjct 1 ATGGCGAATATGATTATTAAGAAACAATTAAGATCTATAAGTTTACCTTCTAGGTCGCAT 60
Query 144 CCAAGCACGACCGGTATCGAGGAAT-CTCTTAACAAGGTCAAAACGATTAACACCATGAC 202
|||||||||| || |||| | || ||||||| ||| | ||||| | | |||| ||
Sbjct 61 CCAAGCACGAGTGGGCTCGAAG-ATGCTCTTAATAAGATTAAAAC-A--ATCACC---AC 113
Query 203 GGGTTCGTCCGAATCAG-TCTTGATGGGCTTGGAGGGTTTGGAGGAGCTCTACAATTGTA 261
||||| ||||| || | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 114 AGGTTCATCCGAGTC-GATCTTGATGGGCTTGGCTGGTTTGGAGGAGCTCTACAATTGTA 172
Query 262 CGGAAGATTTTCTGAAAATGGGCTCAACGCAACGGGTTATGTCATCATCTGATGGATCCG 321
||| ||||||||||||||||| |||||||||| ||||||||| | |||| ||| || |
Sbjct 173 TGGAGGATTTTCTGAAAATGGGTTCAACGCAACAGGTTATGTC--C-TCTGGTGGGTCGG 229
Query 322 AGTTTATGGAGGAGATGCTTGACGGTTCGTTGAGGCTAATGGATATATGCAGTGTCTCGA 381
|||| |||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |
Sbjct 230 AGTTCATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATATGCAGCGTCTCAA 289
Query 382 GGGATCTCATGGTGGAGACTCAAGAGCATGTTCGTGGTGTTCAATCATGTGTCAGGAGAA 441
||||||| |||||||| ||||| |||||||||||||||||||| |||||||| || ||||
Sbjct 290 GGGATCTAATGGTGGATACTCACGAGCATGTTCGTGGTGTTCAGTCATGTGTTAGAAGAA 349
Query 442 AGAAAGTAGTCGGAGGA-GA--AGACCAACTCGATGTCGCCGTCGCGGGGTATGTCGGAT 498
||||||||| ||||||| || ||| ||||||||||||| ||| || | ||||||||||
Sbjct 350 AGAAAGTAGCCGGAGGAGGAGGAGATAAACTCGATGTCGCTGTCTCGAGCTATGTCGGAT 409
Query 499 TTAGAAAGAACATGAGAAAAGAAGCTAAGAGGCTTCTTGGATCTTTGAAGAACATTGATG 558
|||| ||||||||||||||||||||||||| |||||| ||||| || ||||| || |||
Sbjct 410 TTAGGAAGAACATGAGAAAAGAAGCTAAGAAGCTTCTAGGATCCTTAAAGAAAATCAATG 469
Query 559 GAGGTTTAAGTTCATC-ATCATCAGTAAATAATGGTGA-GCAAGAAGAACATCTTGTGGT 616
|||| | || || |||| || |||||| | | | |||| |||||||||||||
Sbjct 470 GAGG-----G-TC-TCGTTCAT--GT-GATAATGATCATG-AAGATGAACATCTTGTGGC 518
Query 617 GGTTGTAGACGCCATGAGACAAGTAG-TTTCCGTTAGCGTCG-CGGTGTTGAGGTCGTTT 674
|||| |||| || |||||| ||| | | ||||| || |||| | || |||| ||||||
Sbjct 519 GGTTATAGATGCGATGAGAGGAGT-GATATCCGTAAGTGTCGTC-GTATTGAAGTCGTTC 576
Query 675 TTGGAATTCTTATCCGGACGACGACAAAGTAACATTAAGAGCAAGCTGGCTTCGGTACTA 734
||||||||||| ||| | ||| | |||||||||| ||||||||| |||||||||| |||
Sbjct 577 TTGGAATTCTTGTCC--A-GACCAAAAAGTAACATAAAGAGCAAGTTGGCTTCGGTGCTA 633
Query 735 AAGAAAAAGAAGGTTCACCATGTTGAGG-AGACCAAGAACGAGTTGGAGA-A-T---TT- 787
||||| ||||||| | | || ||||| | ||||||||||||||||||| | | ||
Sbjct 634 AAGAAGAAGAAGGAT-A--ATCATGAGGCA-ACCAAGAACGAGTTGGAGACATTAGATTC 689
Query 788 -G-GATCT-C-GAGATA-TT-CTGTTCTCGTAATGATCTACAAAAGAAGCTTGAGGAAGT 841
| ||| | | |||| | || || ||||| |||||||||||||| |||||||||| ||
Sbjct 690 CGCGATTTGCGGAGAAATTTCCT-CTCTCG--ATGATCTACAAAAGGAGCTTGAGGAGGT 746
Query 842 TGAGATGAGCATTGA-TGGATTCGAGAAGAAA-CTAGAAGGACTATTTCGAAGGTTGATA 899
||||||||||||| | ||| |||||| ||||| |||||||| | |||||||||||||||
Sbjct 747 TGAGATGAGCATT-AGTGGGTTCGAG-AGAAATCTAGAAGGGTTGTTTCGAAGGTTGATA 804
Query 900 AGAACACGAGCCTCGCTTCTCAACATAATATCTCATTAG 938
||||||||||||||| ||||||||||||| |||||||||
Sbjct 805 AGAACACGAGCCTCGGTTCTCAACATAATCTCTCATTAG 843
> Ahg931629 jgi|Araly1|931629|scaffold_304086.1
Length=926
Score = 211 bits (114), Expect = 8e-54
Identities = 484/651 (74%), Gaps = 71/651 (11%)
Strand=Plus/Plus
Query 321 GAGTTTATGGAGGAGATGCTTGACGGTTCGTTGAGGCTAATGGATATATGCAGTGTCTCG 380
|||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 295 GAGTTTATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCG 354
Query 381 AGGGATCTCATGGTGGAGACTCAAGAGCATGTTCGTGGTGTTCAATCATGTGTCAGGAGA 440
|||||||||||||| |||||||| |||||||||| |||| |||| || ||||| ||||||
Sbjct 355 AGGGATCTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGA 414
Query 441 AAGAAAGTAGTCGGAGGAGAAGACCAACTCGATGTCGCCGTCGCGGGGTATGTCGGATTT 500
| ||||| | | |||||||| ||| || ||||||||||||
Sbjct 415 AGGAAAG-ATT-----------------TCGATGTC----TCG-GGC-TATGTCGGATTT 450
Query 501 AGAAAGAACATGAGAAAAGAAGCT-AAGAGGCTTCTTGGATCTTTGAAGAACATTGATGG 559
|| ||||| ||||| ||||||| | |||| |||||||||||| || ||||||||| |||
Sbjct 451 AGGAAGAATATGAGGAAAGAAG-TGAAGAAGCTTCTTGGATCGTTAAAGAACATTAATGT 509
Query 560 AGGTTTAAGTTCATCATC-ATCAGTAAATAATGGTGA-GCAAGAAGA-A--CATCTTGT- 613
||| ||| || || | |||| | || || | | | | | || | ||| || |
Sbjct 510 AGGGTTA-GTA-ATGAAAGATCA-TGGTTA-TGATCAAG-ACGGTGATATTCAT-TTATT 563
Query 614 GGTGGTTG-TAGACGCCATGAGACAAGTAGTTTCCGTTAGC-GTCGCGGTGTTGAGGTCG 671
|| || | | | || ||||||| || ||||| | | | || |||| |||| ||||
Sbjct 564 GGCCGT-GATTCATGCAATGAGACGTGTCGTTTCAATGA-CAGTTTCGGTCTTGAAGTCG 621
Query 672 TTTTTGGAATTCTTATCCGGACGACGACAAA-GT-AA---CATTAAG-AGCAAGCTGGCT 725
|| ||||| ||||| || ||||||| | ||| | || ||| ||| ||||| |||||
Sbjct 622 TTCTTGGAGTTCTTGTCGGGACGAC-A-AAACGGGAATGACAT-AAGGAGCAAATTGGCT 678
Query 726 TCGGTACTAAAGAAAAAGAAGGTTCACCATGTTGAGGAGAC---CAAGAACGAGTTGGAG 782
| ||| || | ||| |||||| |||| || || ||| ||| || |||||||||
Sbjct 679 TTGGTCCTCATGAACAAGAAGTTTCATGATCACGATAAGATGGTCAAAAATGAGTTGGAG 738
Query 783 AATTTGGAT-CT-CGA---G---ATATTCTGTTCTCGTA--ATGATCTACAAAAGAAGCT 832
||| | ||| | ||| | | ||||| | ||| || ||||||| || ||||||
Sbjct 739 AATGTAGATTCAGCGATTTGTGGAGATTCTAT-CTCTTATGATGATCTTCATGTGAAGCT 797
Query 833 TGAGGAAGTTGAG--ATGAGCATT-GATGGATTCGAGAAGAAACTAGAAGGACTATTTCG 889
||||||||||||| ||| | ||| || || |||||||||| ||||||| | |||||||
Sbjct 798 TGAGGAAGTTGAGGTATG-G-ATTCGAAGG-TTCGAGAAGAGTCTAGAAGAATTATTTCG 854
Query 890 AAGGTTGATAAGAACACGAGCCTCGCTTCTCAACATAATATCTCATTAGGT 940
| || |||| ||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 855 AGGGATGATTAGAACACGAGCCTTGCTTCTCAACATAATCTCTCAATAGGT 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5