BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35700.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328182 jgi|Araly1|328182|fgenesh1_pm.C_scaffold_7000409 699 0.0
> Ahg328182 jgi|Araly1|328182|fgenesh1_pm.C_scaffold_7000409
Length=834
Score = 699 bits (378), Expect = 0.0
Identities = 700/851 (82%), Gaps = 40/851 (5%)
Strand=Plus/Plus
Query 33 ATGAGTAATCCCGAGAAGTCTAAAATTGCTGAGGAAGAGA--A-TGAGAATTTTGACGAG 89
|||||||||||||||||||| |||||| ||||||||| | | ||| |||| |||||||
Sbjct 1 ATGAGTAATCCCGAGAAGTCCAAAATTAATGAGGAAGACATTATTGAAAATTCTGACGAG 60
Query 90 AGTGATTATCTTTGGAGCGATGAAGAAGGAGACATACGTGAAATTGTTCTTGGCCTTCCT 149
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 61 AGTGATTATCTTTGGAGCGATGAAGAAGGAGAAATCCGTGAAATTGTTCTTGCCCTTCCT 120
Query 150 GCACTAAGACTTAGTGAGAGTCTCAATGTGGATGAAAGCATCCGTAACGAAGCCGTTTCC 209
||||| ||||| |||||||||||| ||||||| |||| ||||||||||||||||| | ||
Sbjct 121 GCACTGAGACTCAGTGAGAGTCTCCATGTGGACGAAACCATCCGTAACGAAGCCGCTGCC 180
Query 210 GCGGCGAAGTTGATCGTGGCAGCCG-CCAAGGAAGCCACAGGGAATACAGAACAAAGTGC 268
|||||||| ||||| |||||||||| | || ||||| | ||||| ||||| |||| |||
Sbjct 181 GCGGCGAATTTGATTGTGGCAGCCGTCGAA-GAAGCGGCGGGGAAGACAGATCAAATTGC 239
Query 269 TAGTGGTACCGGTGACGTTAGTGGAACT-CCAGA-AATCATAAAAGTTGGGAAACCCCGT 326
||||||| ||| ||| |||||| ||| ||| | | | | |||| |||| | || |||
Sbjct 240 AAGTGGTATTGGTAACGCTAGTGGGACTCCCA-ATAGT-AAAAAAATTGGTAGGCCACGT 297
Query 327 GTATTATTGGAAGCGCTG--GCCGAAGCATCTGGTTGTACC-CCTATTGGGGTGACCACT 383
|| ||||||||| |||| |||| ||| ||||||| |||| || |||||| ||| | |
Sbjct 298 GTCTTATTGGAA--GCTGAAGCCGCAGCGTCTGGTTCTACCGCC-ATTGGGACGACAAGT 354
Query 384 ACTGAAGGAGAGGTAGTCAAGAAACCCCGTAAGAAAGGTTCTACTCAGTTGACACATCTG 443
|||||| |||||||||| ||||||||||||| |||||||||||| |||||||| |||||
Sbjct 355 ACTGAAAGAGAGGTAGTGAAGAAACCCCGTAGGAAAGGTTCTACCCAGTTGACTCATCTA 414
Query 444 CCGCAAGGCCCTCCTATGTGTAATGTTTGTGGGAAGGGCTTTGCTTCTTGGAAGGCTGTT 503
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 415 CCTCAAGGCCCTCCTATGTGTAATGTTTGTGGGAAGGGCTTTGCTTCTTGGAAGGCCGTT 474
Query 504 TTTGGACATCTAAGGCAGCATAAGGATCGAGGGTATCTAGGTTTTCTTCCTCCGCCAACA 563
||||||||| ||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 475 TTTGGACATTTAAGGCAGCATAAAGATCGTGGTTATCTAGGTTTTCTTCCTCCGCCAACA 534
Query 564 TTCAATGCTGCTGAGGAAGGATTTGGTGGAGTTGCTACTGCTTCAACCGGTGGTGCAGTA 623
|||||||| ||||||||||||||||||||||| ||||||| ||| ||| || || |||
Sbjct 535 TTCAATGCGGCTGAGGAAGGATTTGGTGGAGTCGCTACTGTTTCTTCCGCTGTTGGAGTC 594
Query 624 GCCACTGCTAT-TTCCGTTGGTGAAGTC-CCTACTGCTTCTTCCGCTGGTGGACTCGCTA 681
|| |||||| | ||||| || || |||| || | |||||| |||| ||| ||| ||||||
Sbjct 595 GCTACTGCT-TCTTCCGCTGTTGGAGTCGCC-ATTGCTTCCTCCGGTGGCGGAGTCGCTA 652
Query 682 CGGCTTCTTCCGATGGTGAAGG-GCTTG-T-TTCAAGTATCGGAA--GG-GC-GAGG--A 732
| |||| | ||| ||||| || ||| | ||| ||| | || || | || |
Sbjct 653 CAGCTTGTGCCGCTGGTGGAGTCGCTACATCTTCTTCCGCCGGCACCGGAGCTGTGGGGA 712
Query 733 TTGA-CTTAA-ATGCCGATCC-AGTCGAGGAGGAAGACAAGGTAATTGGAGTTGGATCTA 789
| || || || | ||||| | |||||||||||||||||| | |||| | | |
Sbjct 713 TCGATCTGAACAAA--GATCCCA-TCGAGGAGGAAGACAAGGCACCTGGACCT--A---A 764
Query 790 AGCGAAAATTTGATCTGAATAGGTcccccccACCAGACGGTGATGAAGAGAACGATGATA 849
| |||||||||||||| |||||||| || |||| ||||| ||| |||||||| || || |
Sbjct 765 A-CGAAAATTTGATCTTAATAGGTCTCCTCCACAAGACGATGAAGAAGAGAAGGACGAGA 823
Query 850 AAGTCGAGTGA 860
||| |||||||
Sbjct 824 AAGCCGAGTGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5