BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35710.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491077 jgi|Araly1|491077|fgenesh2_kg.7__510__AT4G35710.1 1182 0.0
Ahg944315 jgi|Araly1|944315|scaffold_700544.1 632 1e-180
Ahg931629 jgi|Araly1|931629|scaffold_304086.1 147 2e-34
> Ahg491077 jgi|Araly1|491077|fgenesh2_kg.7__510__AT4G35710.1
Length=843
Score = 1182 bits (640), Expect = 0.0
Identities = 787/856 (92%), Gaps = 17/856 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAATATGATCATTAAGAAACAGTTAAGATCTATAAGTTTACCTTCTAGATCACAA 60
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1 ATGGCGAATATGATTATTAAGAAACAATTAAGATCTATAAGTTTACCTTCTAGGTCGCAT 60
Query 61 CCAAGCACAAGTGGGCTCGAAGAAT-CTCTTAATAAGATTAAAACAATTAACACCACGAC 119
|||||||| ||||||||||||| || ||||||||||||||||||||| | |||||| |
Sbjct 61 CCAAGCACGAGTGGGCTCGAAG-ATGCTCTTAATAAGATTAAAACAA-T--CACCAC-A- 114
Query 120 GGGTTCATCCGAGTCGATCTTGATGGGCTTGGCTGGTTTGGAGGAGCTCTACATTTTTCT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 115 -GGTTCATCCGAGTCGATCTTGATGGGCTTGGCTGGTTTGGAGGAGCTCTACAATTGTAT 173
Query 180 GGAGGAGTTTCTGAAAATGGGTTCAAAGCAACGGGTTATGTCCTCTGGTGGGTCGGAATT 239
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||
Sbjct 174 GGAGGATTTTCTGAAAATGGGTTCAACGCAACAGGTTATGTCCTCTGGTGGGTCGGAGTT 233
Query 240 CATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATCTGCAGCGTCTCAAGGGA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 CATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATATGCAGCGTCTCAAGGGA 293
Query 300 TCTAATGGTGGAGACTCACGAGCATGTTCGTGGCGTTCAGTCATATGTTAGAAGAAAGAA 359
|||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 294 TCTAATGGTGGATACTCACGAGCATGTTCGTGGTGTTCAGTCATGTGTTAGAAGAAAGAA 353
Query 360 AGTATCTGGTGGAGGAGGAGGAGATAAAATCGATGTCGCTGTCTCCGA-CTATGTCGGAT 418
|||| | |||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 354 AGTA---GCCGGAGGAGGAGGAGATAAACTCGATGTCGCTGTCT-CGAGCTATGTCGGAT 409
Query 419 TTAGGAAGAACATGAGAAAAGAAGCCAAGAAGCTTCTAGGATCCTTGAAGAAAGTCGATG 478
||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |||
Sbjct 410 TTAGGAAGAACATGAGAAAAGAAGCTAAGAAGCTTCTAGGATCCTTAAAGAAAATCAATG 469
Query 479 GAGGGACTCGTTCATGTGATAATGATCATGAAGATGAACAACTTGTGGCGGTTATAGATA 538
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 470 GAGGGTCTCGTTCATGTGATAATGATCATGAAGATGAACATCTTGTGGCGGTTATAGAT- 528
Query 539 G-GGTGAGACGAGTGGTATCGGTAAGTGTCGTCGTATTGAAGTCGTTCTTGGAATTATTG 597
| | ||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 529 GCGATGAGAGGAGTGATATCCGTAAGTGTCGTCGTATTGAAGTCGTTCTTGGAATTCTTG 588
Query 598 TCCAGACGAAAAAGTAACATAAAGAGCAAGTTGGCGTCGGTACTAAAGATGAAGAAGGAT 657
||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 589 TCCAGACCAAAAAGTAACATAAAGAGCAAGTTGGCTTCGGTGCTAAAGAAGAAGAAGGAT 648
Query 658 AACCATGCGCCAGCCAAGAACGTGTTGGAGACATTAGATTCCGCGATTTTCGGAGATTTT 717
|| |||| | || ||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 649 AATCATGAGGCAACCAAGAACGAGTTGGAGACATTAGATTCCGCGATTTGCGGAGAAATT 708
Query 718 TTATCTCAT-GATGATCTTCAAAATGAGCTTGAAGAGGTTGAGATGTGCATTGGTGGGTT 776
| |||| | |||||||| ||||| |||||||| |||||||||||| ||||| |||||||
Sbjct 709 TCCTCTC-TCGATGATCTACAAAAGGAGCTTGAGGAGGTTGAGATGAGCATTAGTGGGTT 767
Query 777 CGAGAGAAATCTAGAAGGGTTGTTTCGAAGGTTGATAAGAACACGAGCCTCGATTCTCAA 836
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 768 CGAGAGAAATCTAGAAGGGTTGTTTCGAAGGTTGATAAGAACACGAGCCTCGGTTCTCAA 827
Query 837 CATAATCTCCCATTAG 852
||||||||| ||||||
Sbjct 828 CATAATCTCTCATTAG 843
> Ahg944315 jgi|Araly1|944315|scaffold_700544.1
Length=892
Score = 632 bits (342), Expect = 1e-180
Identities = 706/876 (81%), Gaps = 48/876 (5%)
Strand=Plus/Plus
Query 1 ATGGCGAATATGATCATTAAGAAACAGTTAAGATCTATAAGTTTACCTTCTAGATCACAA 60
||| ||||||||||| | ||||| || ||||||||||||| |||||||| ||||| ||
Sbjct 21 ATGTCGAATATGATCGTCAAGAATCAACTAAGATCTATAAGCTTACCTTCAAGATCGCAT 80
Query 61 CCAAGCACAAGTGGGCTCGAAGAATCTCTTAATAAGATTAAAACAATTAACACCACGACG 120
|||||||| | ||| |||| ||| ||||||| ||| |||| | ||||||||||||||
Sbjct 81 CCAAGCACGACCGGGGTCGAGGAAGCTCTTAACAAGGTTAATTCGATTAACACCACGACT 140
Query 121 GGTTCATCCGAGTCGA-TCTTGATGGGCTTGGCTGGTTTGGAGGAGCTCTAC-ATTTTTC 178
||||| ||||| || | |||||||||||||||| |||||||||||||||||| ||| | |
Sbjct 141 GGTTCGTCCGAATC-AGTCTTGATGGGCTTGGCGGGTTTGGAGGAGCTCTACAATTGTAC 199
Query 179 TGGAGGAGTTTCTGAAAATGGGTTCAAAGCAACGGGTTATGTCCTCTGGTGGGTCGGAAT 238
||||||||||||||||||||| |||| |||||||||| |||| || | ||| || || |
Sbjct 200 -GGAGGAGTTTCTGAAAATGGGCTCAACGCAACGGGTTTTGTCGTCAGATGGATCTGAGT 258
Query 239 TCATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATCTGCAGCGTCTCAAGGG 298
||||||||||||||||||| |||||||||||||| |||||||| |||||||| || ||||
Sbjct 259 TCATGGAGGAAATGCTTGACGGTTCGTTGAGGCTAATGGATATATGCAGCGTTTCGAGGG 318
Query 299 ATCTAATGGTGGAGACTCACGAGCATGTTCGTGGCGTTCAGTCATATGTTAGAAGAAAGA 358
|||| ||||||||||||||||||||||||||||| ||||| |||| | |||| |||||||
Sbjct 319 ATCTCATGGTGGAGACTCACGAGCATGTTCGTGGTGTTCAATCATGTCTTAGGAGAAAGA 378
Query 359 AAGTATCTGGTGGAGGAGGAGGAGATAAAATCGATGTCGCTGTCTCCGACTATGTCGGAT 418
|| || | || |||||||| | || ||||||| || |||| | ||||||||||
Sbjct 379 AATTAGCCGG---AGGAGGAG-ACC-AAC-TCGATGTTGCCATCTCGGGGTATGTCGGAT 432
Query 419 TTAGGAAGAACATGAGAAAAGAAGCCAAGAAGCTTCTAGGATCCTTGAAGAA-AGTCGAT 477
|||| ||||||||||| |||||||| ||||||||||| |||||||||||||| | | |||
Sbjct 433 TTAGAAAGAACATGAGGAAAGAAGCTAAGAAGCTTCTTGGATCCTTGAAGAACATT-GAT 491
Query 478 GGAGGGACTC-GTTCATGT-----G--A--TAATGATCATGAA-GATGAACAACTTGTGG 526
||||| | | |||||| | | | ||||| ||| ||| || ||||| |||||||
Sbjct 492 GGAGG-ATTAAGTTCATCTTTATCGGTAAATAATGGTCA-GAAAGAAGAACATCTTGTGG 549
Query 527 CGGTTATAGATAGGG-TGAGACGAGTGGTATCGGTAAGTGTCGTCG-TATTGAAGTCGTT 584
|||||| | || | ||||| ||| || || || || ||| ||| | |||| ||||||
Sbjct 550 CGGTTACAAAT-GCAATGAGAAAAGTAGTTTCCGTTAGCGTC-TCGGTGTTGAGGTCGTT 607
Query 585 CTTGGAATTATTGTCCAGACGAAAA-A--GTAACATAAAGAGCAAGTTGGCGTCGGTACT 641
||||| || || | || ||||| | ||||||| ||||||||| |||| ||||||||
Sbjct 608 TTTGGAGTTCTTATTGGGAAGAAAACAAAGTAACATTAAGAGCAAGCTGGCTTCGGTACT 667
Query 642 AAAGATGAAGAAGGATAACCATGC-GCC-AG-CCAAGAACGTGTTGGAGACATTAGATTC 698
||||| ||||||| | | |||| | || ||||||||| |||||||| || |||||
Sbjct 668 AAAGAAAAAGAAGGTTCATCATGTTGAGGAGACCAAGAACGAGTTGGAGAGTTTGGATTC 727
Query 699 CGCGATTTTCGGAGATTTTTTATCTCATGATGATCTTCAAAATGA-GCTTGAAGAGGTTG 757
||||| | | | | || | |||||||||||| | || |||||| |||||||
Sbjct 728 GGCGATATGCTGC--TCTTGT-------GATGATCTTCAAGA-GAAGCTTGAGGAGGTTG 777
Query 758 AGATGTGCATTGGTGGGTTCGAGA-GAAATCTAGAAGGGTTGTTTCGAAGGTTGATAAGA 816
||||| |||| | ||||||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 778 AGATGAGCATCGATGGGTTCGAGAAGAA-TCTAGAAGGGTTATTTCGAAGGTTGATAAGA 836
Query 817 ACACGAGCCTCGATTCTCAACATAATCTCCCATTAG 852
|||||||||||| ||||||||||||| || ||||||
Sbjct 837 ACACGAGCCTCGCTTCTCAACATAATATCTCATTAG 872
> Ahg931629 jgi|Araly1|931629|scaffold_304086.1
Length=926
Score = 147 bits (79), Expect = 2e-34
Identities = 108/122 (89%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 241 ATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATCTGCAGCGTCTCAAGGGAT 300
|||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||
Sbjct 301 ATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCGAGGGAT 360
Query 301 CTAATGGTGGAGACTCACGAGCATGTTCGTGG-CGTTCAGTCATATGTTAGAAGAAAGAA 359
|| ||||| |||||||| |||||||||| ||| | ||||||| | |||||| |||| |||
Sbjct 361 CTCATGGTTGAGACTCATGAGCATGTTCTTGGTC-TTCAGTCTTGTGTTAGGAGAAGGAA 419
Query 360 AG 361
||
Sbjct 420 AG 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5