BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35725.1 Length=532 Score E Sequences producing significant alignments: (Bits) Value Ahg944310 jgi|Araly1|944310|scaffold_700539.1 300 8e-81 Ahg925029 jgi|Araly1|925029|scaffold_200590.1 278 4e-74 > Ahg944310 jgi|Araly1|944310|scaffold_700539.1 Length=280 Score = 300 bits (162), Expect = 8e-81 Identities = 215/241 (89%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 55 AAACATAATCTTTCTACGACGATGGGAAAATTTTCATCCAAGTCTGCTTTCATCATCCTT 114 ||||| | |||||||| || ||||||||||||||| || ||||||||||||||||||||| Sbjct 3 AAACAGAGTCTTTCTATGATGATGGGAAAATTTTCGTCTAAGTCTGCTTTCATCATCCTT 62 Query 115 TTAGCTTTTACTGTGATGGTATCCGTGACAGTTCAGATTGCTGAGGCGAAACGTCTCTTA 174 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 63 TTAGCTTTTACTGTGATGATATTCGTGACAGTTCAGATTGCTGAGGCGAAACGTCTCTTA 122 Query 175 TCTGAAAAAACTTCTCTGAATCTTAAAGCTTCAATATTGGTTAAACAAAATGGAGTT-GG 233 ||||| |||||||||| ||| | |||||||| || |||||| |||||||| ||| || Sbjct 123 CCTGAAGAAACTTCTCTCCATCCTGAAGCTTCACTAACGGTTAAGCAAAATGG-GTTTGG 181 Query 234 TTTTTGTACGCCAGAATGCAAAGAGTTATGTTTTGCTACAAGTTGTTATTGCGTTTGTCC 293 ||||||||||||| ||||||||| |||||||||| |||| | ||||||||||||||||| Sbjct 182 TTTTTGTACGCCACCATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCC 241 Query 294 T 294 | Sbjct 242 T 242 Score = 139 bits (75), Expect = 2e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 331 CATCATGAAGCTCCACTATCGATTAAGCAAAATGAGCTTAGTTTTTGTACGCCAAAATGC 390 |||| ||||||| ||||| || |||||||||||| | || |||||||||||||| |||| Sbjct 141 CATCCTGAAGCTTCACTAACGGTTAAGCAAAATGGGTTTGGTTTTTGTACGCCACCATGC 200 Query 391 AAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCCT 432 |||||||||||||||||||||||||||||||||||||||||| Sbjct 201 AAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCCT 242 > Ahg925029 jgi|Araly1|925029|scaffold_200590.1 Length=284 Score = 278 bits (150), Expect = 4e-74 Identities = 214/245 (87%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 51 GAAGAAACATAATCTTTCTACGACGATGGGAAAATTTTCATCCAAGTCTGCTTTCATCAT 110 ||| ||||| |||||||||| || |||||||||| ||| || ||||||||||||||||| Sbjct 4 GAA-AAACACAATCTTTCTATGATGATGGGAAAAAATTCGTCTAAGTCTGCTTTCATCAT 62 Query 111 CCTTTTAGCTTTTACTGTGATGGTATCCGTGACAGTTCAGATTGCTGAGGCGAAACGTCT 170 |||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||| Sbjct 63 CCTTTTAGCTTTTACTGTGATGATATCCCTGACATTTCAGATTACTGAGTCGAAACGTCT 122 Query 171 CTTATCTGAAAAAACTTCTCTGAATCTTAAAGCTTCAATATTGGTTAAACAAAATGGAGT 230 |||| ||||| ||||||||||| ||| | |||||||| ||| |||||||| |||||| || Sbjct 123 CTTACCTGAAGAAACTTCTCTGCATCCTGAAGCTTCACTATCGGTTAAACCAAATGG-GT 181 Query 231 TG-GTTTTTGTACGCCAGAATGCAAAGAGTTATGTTTTGCTACAAGTTGTTATTGCGTTT 289 | |||||||||| ||| |||||||||| |||||||||| |||| | ||||||||||||| Sbjct 182 TTAGTTTTTGTACACCAAAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTT 241 Query 290 GTCCT 294 | ||| Sbjct 242 GCCCT 246 Score = 145 bits (78), Expect = 4e-34 Identities = 98/108 (91%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 325 TCTGTGCATCATGAAGCTCCACTATCGATTAAGCAAAATGAGCTTAGTTTTTGTACGCCA 384 ||| |||||| ||||||| |||||||| |||| | ||||| | ||||||||||||| ||| Sbjct 139 TCTCTGCATCCTGAAGCTTCACTATCGGTTAAACCAAATGGGTTTAGTTTTTGTACACCA 198 Query 385 AAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCCT 432 |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 199 AAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGCCCT 246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19383039212 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5