BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35725.1
Length=532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944310 jgi|Araly1|944310|scaffold_700539.1 300 8e-81
Ahg925029 jgi|Araly1|925029|scaffold_200590.1 278 4e-74
> Ahg944310 jgi|Araly1|944310|scaffold_700539.1
Length=280
Score = 300 bits (162), Expect = 8e-81
Identities = 215/241 (89%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 55 AAACATAATCTTTCTACGACGATGGGAAAATTTTCATCCAAGTCTGCTTTCATCATCCTT 114
||||| | |||||||| || ||||||||||||||| || |||||||||||||||||||||
Sbjct 3 AAACAGAGTCTTTCTATGATGATGGGAAAATTTTCGTCTAAGTCTGCTTTCATCATCCTT 62
Query 115 TTAGCTTTTACTGTGATGGTATCCGTGACAGTTCAGATTGCTGAGGCGAAACGTCTCTTA 174
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 63 TTAGCTTTTACTGTGATGATATTCGTGACAGTTCAGATTGCTGAGGCGAAACGTCTCTTA 122
Query 175 TCTGAAAAAACTTCTCTGAATCTTAAAGCTTCAATATTGGTTAAACAAAATGGAGTT-GG 233
||||| |||||||||| ||| | |||||||| || |||||| |||||||| ||| ||
Sbjct 123 CCTGAAGAAACTTCTCTCCATCCTGAAGCTTCACTAACGGTTAAGCAAAATGG-GTTTGG 181
Query 234 TTTTTGTACGCCAGAATGCAAAGAGTTATGTTTTGCTACAAGTTGTTATTGCGTTTGTCC 293
||||||||||||| ||||||||| |||||||||| |||| | |||||||||||||||||
Sbjct 182 TTTTTGTACGCCACCATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCC 241
Query 294 T 294
|
Sbjct 242 T 242
Score = 139 bits (75), Expect = 2e-32
Identities = 93/102 (91%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 331 CATCATGAAGCTCCACTATCGATTAAGCAAAATGAGCTTAGTTTTTGTACGCCAAAATGC 390
|||| ||||||| ||||| || |||||||||||| | || |||||||||||||| ||||
Sbjct 141 CATCCTGAAGCTTCACTAACGGTTAAGCAAAATGGGTTTGGTTTTTGTACGCCACCATGC 200
Query 391 AAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCCT 432
||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCCT 242
> Ahg925029 jgi|Araly1|925029|scaffold_200590.1
Length=284
Score = 278 bits (150), Expect = 4e-74
Identities = 214/245 (87%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 51 GAAGAAACATAATCTTTCTACGACGATGGGAAAATTTTCATCCAAGTCTGCTTTCATCAT 110
||| ||||| |||||||||| || |||||||||| ||| || |||||||||||||||||
Sbjct 4 GAA-AAACACAATCTTTCTATGATGATGGGAAAAAATTCGTCTAAGTCTGCTTTCATCAT 62
Query 111 CCTTTTAGCTTTTACTGTGATGGTATCCGTGACAGTTCAGATTGCTGAGGCGAAACGTCT 170
|||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||
Sbjct 63 CCTTTTAGCTTTTACTGTGATGATATCCCTGACATTTCAGATTACTGAGTCGAAACGTCT 122
Query 171 CTTATCTGAAAAAACTTCTCTGAATCTTAAAGCTTCAATATTGGTTAAACAAAATGGAGT 230
|||| ||||| ||||||||||| ||| | |||||||| ||| |||||||| |||||| ||
Sbjct 123 CTTACCTGAAGAAACTTCTCTGCATCCTGAAGCTTCACTATCGGTTAAACCAAATGG-GT 181
Query 231 TG-GTTTTTGTACGCCAGAATGCAAAGAGTTATGTTTTGCTACAAGTTGTTATTGCGTTT 289
| |||||||||| ||| |||||||||| |||||||||| |||| | |||||||||||||
Sbjct 182 TTAGTTTTTGTACACCAAAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTT 241
Query 290 GTCCT 294
| |||
Sbjct 242 GCCCT 246
Score = 145 bits (78), Expect = 4e-34
Identities = 98/108 (91%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 325 TCTGTGCATCATGAAGCTCCACTATCGATTAAGCAAAATGAGCTTAGTTTTTGTACGCCA 384
||| |||||| ||||||| |||||||| |||| | ||||| | ||||||||||||| |||
Sbjct 139 TCTCTGCATCCTGAAGCTTCACTATCGGTTAAACCAAATGGGTTTAGTTTTTGTACACCA 198
Query 385 AAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCCT 432
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 199 AAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGCCCT 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19383039212
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5