BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35730.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491075 jgi|Araly1|491075|fgenesh2_kg.7__508__AT4G35730.1 2483 0.0
Ahg943750 jgi|Araly1|943750|scaffold_604294.1 220 2e-56
Ahg933390 jgi|Araly1|933390|scaffold_401378.1 215 9e-55
Ahg890983 jgi|Araly1|890983|Al_scaffold_0007_2969 189 5e-47
Ahg939867 jgi|Araly1|939867|scaffold_600411.1 183 3e-45
> Ahg491075 jgi|Araly1|491075|fgenesh2_kg.7__508__AT4G35730.1
Length=1555
Score = 2483 bits (1344), Expect = 0.0
Identities = 1461/1518 (96%), Gaps = 5/1518 (0%)
Strand=Plus/Plus
Query 67 AAGAAAATGACGGCGGCCGAAGTAGCTTCTGCGCAGACCAAGAAGCTCATGAAGTTTAGT 126
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 43 AAGAAAATGACGGCGGCCGAAGTAGCTTCTGCGCAGACCAAAAAGCTCATGAAGTTTAGT 102
Query 127 CTTTCTCTCTTCCGTCGTGGCTTTAACTCCTCTAAATGCAAAACGGCGGCGAAGATGGCT 186
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 103 CTCTCTCTCTTCCGTCGTGGTTTTAACTCCTCTAAATGCAAAACGGCGGCGAAGATGGCT 162
Query 187 GTGGCTCGTATAAAGCTTATAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATGAGGCGT 246
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GTGGCTCGGATAAAGCTTTTAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATGAGGCGT 222
Query 247 GACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACTGCTCGAATCAGAGTTGAGCAT 306
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 223 GACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACCGCTCGAATCAGAGTTGAGCAT 282
Query 307 GTGATAAGGGAACAGAACATTCAGGCAGCAAACGAAATCATTGAGCTTTTCTGTGAACTT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GTGATAAGGGAACAGAACATTCAGGCAGCAAACGAAATCATTGAGCTTTTCTGTGAACTT 342
Query 367 ATTGTTTCTCGTCTCACTATCATCACTAAGCAAAAGCAATGTCCTGTGGATCTTAAGGAA 426
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 ATTGTTGCTCGTCTCACTATCATCACTAAGCAAAAGCAATGTCCTGTGGATCTTAAGGAA 402
Query 427 GGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATGCTCTGAAATTCCTGAGCTTGGAGAT 486
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 403 GGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATGCTCTGAGATTCCTGAGCTTGGAGAT 462
Query 487 CTTAGAGACATCTTTGCGAAGAAATATGGGAAAGATTTTGTATCTGCTGCTACTGATTTG 546
||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 463 CTTCGAGACATCTTTGAGAAGAAGTATGGGAAAGATTTTGTATCTGCTGCTACTGATTTG 522
Query 547 CGTCCTAGCTGCGGTGTTAACCGGATGTTGATTGATAAGCTTTCGGTTAGAAATCCCGGT 606
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 523 CGTCCTAGCTGCGGCGTAAACCGAATGTTGATTGATAAGCTTTCGGTTAGAAATCCCGGT 582
Query 607 GGAGAATACAAACTGAAAATCATGAAGGAAATTGCAAAGGAATTCCAGGTTGATTGGGAT 666
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GGAGAATACAAACTCAAAATCATGAAGGAAATTGCAAAGGAATTCCAGGTTGATTGGGAT 642
Query 667 ACTACAGAGACAGAGCAAGAACTTCTCAAACCTCAAGAAGAAAGCATAGACGGGCCACGT 726
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ACTACAGAGACGGAGCAAGAACTTCTCAAACCTCAAGAAGAAAGCATAGACGGGCCACGT 702
Query 727 AAGTTTGTTAGCGCTTCAAGCTTACCAGTTAATCGTGCAGCTATCAACGAGCCTATTGAT 786
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 703 AAGTTTGTTAGCGCTTCAAGCTTACCAGTTAATCGTGAAGCTATCAACGAGCCTTTTGAT 762
Query 787 CCTACCAAAGCAGTGCCAAGATCGACTAGTAGCATGAGCATCAACACGCATTATCATGAC 846
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CCTACCAAAGCAGTGCCGAGATCGACTAGTAGCATGAGCATCAACACGCATTATCATGAC 822
Query 847 ACCGAGTCAGCAGCGGAAGCAGCTACAGAATTAGCCAAACAGGCAGTTGCAGCAGCACAA 906
||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 823 ACCGAGTCAGCAGTGGAAGCAGCTACTGAATTAGCCAAACAGGCAGTTCCAGCAGCACAA 882
Query 907 GTAGCCTCCTTATTAGCTACCAGAAGAGACAGCAGCAACAAGGAGTTCTCTGTATCTTCT 966
|||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 883 GTAGCCTCCTTATTAGCTACCAGAAGAGACAGCA-C--CAAGGAATTCTCTGTATCTTCT 939
Query 967 GATCATTCAACACACCAGAAGGATTCACAGTACATGGatcatcatcatcatcatcCAGGT 1026
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 940 GATCGTTCAACAAATCAGAAGGATTCACAGTACATGGATCATCATCATCATCATCTAGGT 999
Query 1027 TCAAGAAGACAATCACGAGACTCCGAAACAAGTTCCTATTACGCAAAACCTGGTGCAGAA 1086
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1000 TCAAGAAGAGAATCACGAGACTCCGAAACAAGTTCCTATTACGCAAAACCTAGTGCAGAA 1059
Query 1087 AACAGAGGAATGGGTAGGAGACACAGCTACAACAATCCGGGTATTAATGAATCTGACTAC 1146
||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1060 AACAGGGGAATGGGTAGAAGACACAGCTACAACTATCCGGGTATTAATGAATCTGACTAC 1119
Query 1147 GAGGAAGAGTATACCAATACCGAAGCAGAAGCAAAAGAAACAATGAGGAGGAGACACAGC 1206
|||||||| || ||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1120 GAGGAAGACTACACCAAGACCAAAGCAGAAGCAAAGGAAACAATGAGGAGGAGACACAGC 1179
Query 1207 TACAACCCTCGATCAGTTCCTCCTCCTGCAACTTCTGAGATCAAGTTTGATGAGTCAGAC 1266
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 TACAACTCTCGATCAGTTCCTCCTCCTGCAACTTCTGAGATCAAGTTTGATGAGTCAGAC 1239
Query 1267 TACTACGAGGAAGAGACAGAGCCAGATGAACCATCACAGGGTCGTGTTTCTTCTCTCCCG 1326
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1240 TACTACGAGGAAGAGACAGAGCCAGAAGAACCATCACATGGTCGTGTTTCTTCTCTCCCG 1299
Query 1327 CCAAACCGAGCACCGCCTCAGGCTCCTCAGTCCGGTGAGTCCAGACAGGACTCGAGCGGT 1386
|||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1300 CCAAACCGAGAACCTCCTCAGGCTCCTCAGTCCGGTGAGTCCAGACGGGACTCAAGCGGT 1359
Query 1387 CACCAGGTTCACCCAAAACTGCCTGACTATGATATTTTGGCTGCACGTTTTGAAGCAATC 1446
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1360 CACCATGTTCACCCAAAACTGCCTGACTATGACATTTTGGCTGCACGTTTTGAAGCAATC 1419
Query 1447 AGACACAGTAAAGGGCCATTGATCTGAAGCCAATAACTTCCACTACTGCTATATACATAG 1506
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1420 AGAAACAGTAAAGGGCCATTGATCTGAAGCCAATAACTTCCACTACTGCTATATA--TAG 1477
Query 1507 AAAGAAATCATGTACGGGATAATGCAACTATCATGTTTAGTTTTGTTTATGAAGAGGAAG 1566
|||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 1478 AAAGAAATCACGTACGGGATAATGCAATTATCATGTTTAGTTTTGTGTATGAAGAAGAAG 1537
Query 1567 AAGAAAGATGCATTTTTT 1584
|||||||||||||||||
Sbjct 1538 TAGAAAGATGCATTTTTT 1555
> Ahg943750 jgi|Araly1|943750|scaffold_604294.1
Length=203
Score = 220 bits (119), Expect = 2e-56
Identities = 133/140 (95%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 160 AAATGCAAAACGGCGGCGAAGATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGA 219
||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 50 AAAAGCAAAACGGCGGCGAAGATGGATGTGGCTCGGATAAAGCTTATAAGGAACAAGAGA 109
Query 220 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGAT 279
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 110 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGATGTTCTTCTTCAATCCGGTCAAAAT 169
Query 280 GCCACTGCTCGAATCAGAGT 299
||||| ||| ||||||||||
Sbjct 170 GCCACCGCTTGAATCAGAGT 189
> Ahg933390 jgi|Araly1|933390|scaffold_401378.1
Length=205
Score = 215 bits (116), Expect = 9e-55
Identities = 131/138 (95%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 160 AAATGCAAAACGGCGGCGAAGATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGA 219
||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 1 AAA-GCAAAACGGCGGCGAAGATGGATGTGGCTCGGATAAAGCTTCTAAGGAACAAGAGA 59
Query 220 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGAT 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGAT 119
Query 280 GCCACTGCTCGAATCAGA 297
||||| ||| | ||||||
Sbjct 120 GCCACCGCTTGTATCAGA 137
> Ahg890983 jgi|Araly1|890983|Al_scaffold_0007_2969
Length=195
Score = 189 bits (102), Expect = 5e-47
Identities = 112/117 (96%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 181 ATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATG 240
|||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGTGGCTCGGATAAAGCTTCTAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATG 60
Query 241 AGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACTGCTCGAATCAGA 297
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 61 AGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACCGCTCGTATCAGA 117
> Ahg939867 jgi|Araly1|939867|scaffold_600411.1
Length=1795
Score = 183 bits (99), Expect = 3e-45
Identities = 113/120 (94%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 402 GCAATGTCCTGTGGATCTTAAGGAAGGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATG 461
|||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1613 GCAATGTCTTGTGGATCTTAAGGAAGGTATTGCTAGTTTGATTGTTGCTGCACCTAGATG 1672
Query 462 CTCTGAAATTCCTGAGCTTGGAGATCTTAGAGACATCTTTGCGAAGAAATATGGGAAAGA 521
|||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct 1673 CTCTGAGATTCCTGAGCTTGGAGATCTTCGAGACATCTTTGAGAAGAAGTATGGGAAAGA 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5