BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35733.1 Length=1181 Score E Sequences producing significant alignments: (Bits) Value Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1 1537 0.0 > Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1 Length=1080 Score = 1537 bits (832), Expect = 0.0 Identities = 1007/1089 (92%), Gaps = 21/1089 (2%) Strand=Plus/Plus Query 105 ATGAGTGAAGCCACCGTGTGGTCTGATTTACCCGGAGAACTCCTCGATCATATAGCCAAC 164 |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGAGTGAAGTGATCGTGTGGTCTGATTTACCCGGAGACCTCCTCGATCATATAGCCAAC 60 Query 165 GGTCTCTTCTCCAAAGTCGAGCTTCTCCGATTCCGTAGCATCTGCAAAACCTTCCGTTCT 224 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 61 GGTCTCTTCTCCAAAGTCGAGCTTCTCCGGTTCCGTAGCATCTGCAAAACCTGCCGTTCT 120 Query 225 GCGGTT--GACTCCGACAAGAATTTTCTCGACCACCTCAAACGCAACCGTAGACGCCTTC 282 |||||| || | | |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 121 GCGGTTGCGA-T-CAACAAGAGTTTTCTCGACCACCTCAAACGCAACCGTAGACGCCTTC 178 Query 283 TCTCTCCTTACAGTACTGGTAAAACGTGTTCGCTCTCTCCCGCAGCTTTCTATCGAGTGG 342 | ||||||||||||| ||||||||||||||| || ||||||||| |||||||||| |||| Sbjct 179 TTTCTCCTTACAGTATTGGTAAAACGTGTTCACTTTCTCCCGCACCTTTCTATCGTGTGG 238 Query 343 TTCTGTCGTCATATCCGGACAAAGGATGGCTTATCAAACTCCAAGATGCCTATGTCTCCT 402 |||| ||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||| Sbjct 239 TTCTCTCGTCATGTCCGGACAAAGGATGGCTTATCAAAATTCAAGATGTCTATGTCTCCT 298 Query 403 CTCAAAAGCAGCTCCTTTCTCCTCTCTCTCGTTTCTCCATCAAATCATCTGGCAAAACCC 462 |||||||||| |||||||||||||||||||||||||| || ||||| || ||| |||||| Sbjct 299 CTCAAAAGCAACTCCTTTCTCCTCTCTCTCGTTTCTCGATAAAATCTTCCGGCCAAACCC 358 Query 463 TAGATCTCTTGGAGTTCACGGTTTCAGAGATTCATCAATCTTACGACGTGGAATACTTAT 522 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | | Sbjct 359 TAGATCTCTTGGAGTTCACGGTTACAGAGATGCATCAATCTTACGACGTGGAATAC-T-T 416 Query 523 ATTATAATTCGACTAGAGCATCGTTTAATTTCGCTAGAGTTGTTCTAGCAGAGGACTTTG 582 | ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| | Sbjct 417 A-TATAATTCGACAAGAACATCGTTTAATTTCGCTAGAGTTGTTCTATTAGAGGACTTGG 475 Query 583 TTTTCATAGTTGATAACTACAAGAAAATCTGGTTGTGCAATAGTAACGAAAGTGATAGTC 642 ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| || Sbjct 476 TTTTCGTAGTTGATTACTACAAGAAAATCTGGTGGTGCAATAGTAACGAAAGTGATAATC 535 Query 643 ATTGGGTAAGAATCATGGATGAAGAAGTTAAACTTTTCTCGGATATTGTATTTCACAAAG 702 | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 AGTGGGCAAGAGTCATGGATGAAGAAGTTAAACTTTTCTCGGATATTGTATTTCACAAAG 595 Query 703 GTTATATGTATGCCTTAGACTTAACAGGAGCAGTTTGGTGGATTAGTTTATCTGAGTTTG 762 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 596 GTTATATGTATGCCTTAGACTTAAAAGGCGCAGTTTGGTGGATTAGTTTATCTGAGTTTG 655 Query 763 GAATATTTCAATTCGGACCTTCAAGTACTCCAATGGACTACTGTGACATTGATGAGT-GC 821 ||||||||||| ||||||||||| ||||| ||||||||| |||||||||| | | || Sbjct 656 AAATATTTCAATACGGACCTTCAA---CTCCACTGGACTACTATGACATTGAT-ACTTGC 711 Query 822 AAAGACAAGAGGTTCGTTGAGTATTGCGGAGATCTATGCATTGTTCATCGATTTTCTAGG 881 |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| Sbjct 712 AAAGACAAGAGGTTTGTGGAGTATTGCGGAGATCTATGCATTGTTCATCGATTTTGTAGG 771 Query 882 AAATTTCGCATAAAGCGAGTTGATATAGATATGACAGTTGGTTTCAAGGTTTATAAGATG 941 ||||||||| |||||||||||||||| ||||| || |||||||| ||||||||||||||| Sbjct 772 AAATTTCGCCTAAAGCGAGTTGATATCGATATAACCGTTGGTTTTAAGGTTTATAAGATG 831 Query 942 GACGAGGAATTGGTTGAATATGTTGAGGTTAAGTCTTTGGGAGATAAGGCTTTTGTGATG 1001 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 832 GACGAGGAATTGGTTGAATATGTTGAGGTTAAGTCTTTGGGGGATAAGGCTTTTGTGATG 891 Query 1002 GCTACAGATAGTTGTTTCTCTGTCTTGGCGAGAGAGTACTATGGATGTTTGGAGAATTCG 1061 |||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||| Sbjct 892 GCTACAGATAGTTGCTTCACTGTCTTGGCTAGAGAGTATTATGGATGTTTGGAGAATTCG 951 Query 1062 ATCTATTTTAC--A-GAGCAA-A---A--CAATGTTAAAGTGTTCAAGCTTGGTGATGGT 1112 ||||||||||| | ||| || | | ||||||||||||||||||||||||||||||| Sbjct 952 ATCTATTTTACTGACGAGGAAGAGCGAAACAATGTTAAAGTGTTCAAGCTTGGTGATGGT 1011 Query 1113 AGTATCACTAACATGGTTGATTCTTCTTTTCAGAGTTGTTTTCAGATGCTTATTCCTCCT 1172 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 AGTATCACTAAGATGGTTGATTCTTCTTTTCAGAGTTGTTTTCAGATGCTTATTCCTCCT 1071 Query 1173 TTAGTTTGA 1181 ||||||||| Sbjct 1072 TTAGTTTGA 1080 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44070092052 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5