BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35733.1
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1 1537 0.0
> Ahg491074 jgi|Araly1|491074|fgenesh2_kg.7__507__AT4G35733.1
Length=1080
Score = 1537 bits (832), Expect = 0.0
Identities = 1007/1089 (92%), Gaps = 21/1089 (2%)
Strand=Plus/Plus
Query 105 ATGAGTGAAGCCACCGTGTGGTCTGATTTACCCGGAGAACTCCTCGATCATATAGCCAAC 164
|||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGTGAAGTGATCGTGTGGTCTGATTTACCCGGAGACCTCCTCGATCATATAGCCAAC 60
Query 165 GGTCTCTTCTCCAAAGTCGAGCTTCTCCGATTCCGTAGCATCTGCAAAACCTTCCGTTCT 224
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 61 GGTCTCTTCTCCAAAGTCGAGCTTCTCCGGTTCCGTAGCATCTGCAAAACCTGCCGTTCT 120
Query 225 GCGGTT--GACTCCGACAAGAATTTTCTCGACCACCTCAAACGCAACCGTAGACGCCTTC 282
|||||| || | | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGGTTGCGA-T-CAACAAGAGTTTTCTCGACCACCTCAAACGCAACCGTAGACGCCTTC 178
Query 283 TCTCTCCTTACAGTACTGGTAAAACGTGTTCGCTCTCTCCCGCAGCTTTCTATCGAGTGG 342
| ||||||||||||| ||||||||||||||| || ||||||||| |||||||||| ||||
Sbjct 179 TTTCTCCTTACAGTATTGGTAAAACGTGTTCACTTTCTCCCGCACCTTTCTATCGTGTGG 238
Query 343 TTCTGTCGTCATATCCGGACAAAGGATGGCTTATCAAACTCCAAGATGCCTATGTCTCCT 402
|||| ||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 239 TTCTCTCGTCATGTCCGGACAAAGGATGGCTTATCAAAATTCAAGATGTCTATGTCTCCT 298
Query 403 CTCAAAAGCAGCTCCTTTCTCCTCTCTCTCGTTTCTCCATCAAATCATCTGGCAAAACCC 462
|||||||||| |||||||||||||||||||||||||| || ||||| || ||| ||||||
Sbjct 299 CTCAAAAGCAACTCCTTTCTCCTCTCTCTCGTTTCTCGATAAAATCTTCCGGCCAAACCC 358
Query 463 TAGATCTCTTGGAGTTCACGGTTTCAGAGATTCATCAATCTTACGACGTGGAATACTTAT 522
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |
Sbjct 359 TAGATCTCTTGGAGTTCACGGTTACAGAGATGCATCAATCTTACGACGTGGAATAC-T-T 416
Query 523 ATTATAATTCGACTAGAGCATCGTTTAATTTCGCTAGAGTTGTTCTAGCAGAGGACTTTG 582
| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 417 A-TATAATTCGACAAGAACATCGTTTAATTTCGCTAGAGTTGTTCTATTAGAGGACTTGG 475
Query 583 TTTTCATAGTTGATAACTACAAGAAAATCTGGTTGTGCAATAGTAACGAAAGTGATAGTC 642
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 476 TTTTCGTAGTTGATTACTACAAGAAAATCTGGTGGTGCAATAGTAACGAAAGTGATAATC 535
Query 643 ATTGGGTAAGAATCATGGATGAAGAAGTTAAACTTTTCTCGGATATTGTATTTCACAAAG 702
| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGTGGGCAAGAGTCATGGATGAAGAAGTTAAACTTTTCTCGGATATTGTATTTCACAAAG 595
Query 703 GTTATATGTATGCCTTAGACTTAACAGGAGCAGTTTGGTGGATTAGTTTATCTGAGTTTG 762
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 596 GTTATATGTATGCCTTAGACTTAAAAGGCGCAGTTTGGTGGATTAGTTTATCTGAGTTTG 655
Query 763 GAATATTTCAATTCGGACCTTCAAGTACTCCAATGGACTACTGTGACATTGATGAGT-GC 821
||||||||||| ||||||||||| ||||| ||||||||| |||||||||| | | ||
Sbjct 656 AAATATTTCAATACGGACCTTCAA---CTCCACTGGACTACTATGACATTGAT-ACTTGC 711
Query 822 AAAGACAAGAGGTTCGTTGAGTATTGCGGAGATCTATGCATTGTTCATCGATTTTCTAGG 881
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 712 AAAGACAAGAGGTTTGTGGAGTATTGCGGAGATCTATGCATTGTTCATCGATTTTGTAGG 771
Query 882 AAATTTCGCATAAAGCGAGTTGATATAGATATGACAGTTGGTTTCAAGGTTTATAAGATG 941
||||||||| |||||||||||||||| ||||| || |||||||| |||||||||||||||
Sbjct 772 AAATTTCGCCTAAAGCGAGTTGATATCGATATAACCGTTGGTTTTAAGGTTTATAAGATG 831
Query 942 GACGAGGAATTGGTTGAATATGTTGAGGTTAAGTCTTTGGGAGATAAGGCTTTTGTGATG 1001
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 832 GACGAGGAATTGGTTGAATATGTTGAGGTTAAGTCTTTGGGGGATAAGGCTTTTGTGATG 891
Query 1002 GCTACAGATAGTTGTTTCTCTGTCTTGGCGAGAGAGTACTATGGATGTTTGGAGAATTCG 1061
|||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 892 GCTACAGATAGTTGCTTCACTGTCTTGGCTAGAGAGTATTATGGATGTTTGGAGAATTCG 951
Query 1062 ATCTATTTTAC--A-GAGCAA-A---A--CAATGTTAAAGTGTTCAAGCTTGGTGATGGT 1112
||||||||||| | ||| || | | |||||||||||||||||||||||||||||||
Sbjct 952 ATCTATTTTACTGACGAGGAAGAGCGAAACAATGTTAAAGTGTTCAAGCTTGGTGATGGT 1011
Query 1113 AGTATCACTAACATGGTTGATTCTTCTTTTCAGAGTTGTTTTCAGATGCTTATTCCTCCT 1172
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AGTATCACTAAGATGGTTGATTCTTCTTTTCAGAGTTGTTTTCAGATGCTTATTCCTCCT 1071
Query 1173 TTAGTTTGA 1181
|||||||||
Sbjct 1072 TTAGTTTGA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5