BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35740.1
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491073 jgi|Araly1|491073|fgenesh2_kg.7__506__AT4G35740.1 3138 0.0
> Ahg491073 jgi|Araly1|491073|fgenesh2_kg.7__506__AT4G35740.1
Length=2463
Score = 3138 bits (1699), Expect = 0.0
Identities = 1945/2058 (95%), Gaps = 40/2058 (2%)
Strand=Plus/Plus
Query 372 GCTTTGATGGAAAATCAAGTAATGGCGCTGAAGGAGAAAGGTATTGCTGCTGAGTATCTC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GCTTTGATGGAAAATCAAGTAATGGCGCTGAAGGAGAAAGGTATTGCTGCTGAGTATCTC 491
Query 432 TCATCTACCCAAGCTACACATGTTAAGAACAAGATCCATGAAGACCTTGATTCTGGAAAA 491
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TCATCTACCCAAGCTACGCATGTTAAGAACAAGATCCATGAAGACCTTGATTCTGGAAAA 551
Query 492 CCCTCAGTAAGATTGCTGTATGTTACTCCAGAATTGATTGCGACGAAAGGGTTTATGTTG 551
||||| |||||||||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 552 CCCTCTGTAAGATTGCTGTATGTTACTCCAGAATTGATCGCAACTAAAGGATTTATGTTG 611
Query 552 AAGCTGAGAAAACTCCATTCCAGGGGTTTGCTAAATCTTATAGCTATAGACGAGGCGCAT 611
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 612 AAGCTGAGAAAACTCCATTCCAGAGGTTTGCTATATCTTATAGCTATAGACGAGGCACAT 671
Query 612 TGCATCTCATCATGGGGCCACGACTTCAGACCTAGTTATCGTCAACTTTCAACCTTGAGA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TGCATCTCATCATGGGGCCACGACTTCAGACCTAGTTATCGTCAACTTTCAACCTTGAGA 731
Query 672 GATTCTTTGGCAGATGTTCCGGTGTTGGCTCTAACTGCTACTGCTGCTCCCAAAGTACAA 731
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 732 GATTCTTTGGCAGATGTTCCAGTGTTGGCTCTAACTGCTACTGCTGCTCCCAAGGTACAA 791
Query 732 AAGGATGTTATCGACTCCTTGAATTTGCGGAATCCTTTGGTCCTCAAGTCTTCTTTCAAT 791
||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 792 AAGGATGTTATCGACTCATTGAATTTGCAGAATCCTTTGGTCCTCAAGTCTTCGTTCAAT 851
Query 792 CGCCCAAATATCTTCTATGAAGTTCGTTACAAAGATCTTTTGGATAATGCTTATACTGAT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CGCCCAAATATCTTCTATGAAGTTCGTTACAAAGATCTTTTGGATAATGCTTATACTGAT 911
Query 852 TTGGGCAACTTGCTCAAGTCATGTGGAAATATTTGTGCAATTATCTATTGCCTTGAGCGT 911
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 912 TTGGGAAACTTGCTCAAGTCATGTGGAAATATTTGTGCGATTATCTATTGCCTTGAGCGT 971
Query 912 ACAACCTGTGATGACTTGTCTGTTCATCTTTCCAGTATTGGGATTTCTTCTGCGGCCTAT 971
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 972 ACAACCTGTGATGACTTGTCTGTTCATCTTTCCAGTATTGGGATCTCTTCTTCAGCCTAT 1031
Query 972 CATGCAGGACTCAATAGTAAAATGAGGAGTACTGTTTTAGATGATTGGCTGTCCTCCAAG 1031
||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||
Sbjct 1032 CATGCAGGACTCAATAGCAAACTAAGGAGTACTGTTTTAGATGATTGGCTGTCCTCGAAG 1091
Query 1032 AAGCAAATTATTGTTGCCACAGTGGCTTTC-G---GA------A--TGGGCATAGATAAG 1079
|||||||||||||||||||| ||||||||| | || | ||||||||||||||
Sbjct 1092 AAGCAAATTATTGTTGCCACTGTGGCTTTCGGCTCGATGGGGCACGTGGGCATAGATAAG 1151
Query 1080 AAGGATGTCAGAATGGTTTGCCATTTTAACATTCCAAAATCAATGGAATCTTTCTATCAA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AAGGATGTCAGAATGGTTTGCCATTTTAACATTCCAAAATCAATGGAATCTTTCTATCAA 1211
Query 1140 GAGTCTGGTAGAGCAGGTCGGGATCAATTACCTTCAAGAAGTGTATTATACTATGGTGTA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 GAGTCTGGTAGAGCAGGTCGGGATCAATTACCTTCAAGAAGTGTATTATACTATGGTGTA 1271
Query 1200 GATGACAGAAAGAAAATGGAATATCTTCTGCGGAATTCGGAGAATAAGAAATCCTCATCC 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1272 GATGACAGAAAGAAAATGGAATATCTTCTGCGGAATTCGGAGAATAAGAAATCCCCATCC 1331
Query 1260 TCTAAGAAGCCTACATCTGACTTTGAACAGATTGTGACGTACTGCGAAGGTTCTGGATGC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TCTAAGAAGCCTACATCTGACTTTGAACAGATTGTGACGTACTGCGAAGGTTCTGGATGC 1391
Query 1320 CGAAGAAAAAAGATTCTTGAGAGCTTTGGTGAAGAGTTTCCTGTGCAGCAATGCaaaaaa 1379
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1392 CGAAGAAAAAAGATTCTTGAGAGCTTTGGTGAAGAGTTTCCTGTGCAGCACTGCAAAAAA 1451
Query 1380 aCGTGTGATGCATGTAAGCATCCTAATCAAGTTGCTCATTGCTTGGAGGAGCTTATGACC 1439
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1452 ACGTGTGATGCATGTAAGTATCCAAATCAAGTTGCTCATTGCTTGGAGGAGCTCATGACC 1511
Query 1440 ACTGCCTCCCGAAGACACAATTCTTCTCGAATTTTCATCACCAGCTCGAACAATAAGACC 1499
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 ACCGCCTCCCGAAGACACAATTCTTCTCGAATTTTCATCACCAGCTCGAACAATAAGACC 1571
Query 1500 AATGAGGGACAGTACTCTGAGTTCTGGAATCGTAATGAAGATGGAAGCAATTCCAATGAG 1559
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1572 AATGAGGGACAGTACTCTGAATTCTGGAATCGTAATGAAGATGGAAGCAATTCCGATGAG 1631
Query 1560 GAAATATCAGATTCAGATGATGCCACTGAGGCTGCCAATAGCGTAACAGGACCTAAACTA 1619
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 1632 GAAATATCAGATTCAGATGATGCCACTGAGGCTGCCAAGAGCCTAGCAGGACCTAAACTA 1691
Query 1620 TCGAAAAAGTTGGGACTAGACGAGAAATTGGTTTTACTGGAGCAAGCTGAGGAAAAGTAC 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TCGAAAAAGTTGGGACTAGACGAGAAATTGGTTTTACTGGAGCAAGCTGAGGAAAAGTAC 1751
Query 1680 TACGAAAGGAATAAACAGGTCAAAAAGTCAGAGAAGAATGCAATATCTGAAGCCCTAAGG 1739
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1752 TACGAAAGGAACAAACAGGTCAAAAAGTCCGAGAAGAATGCAATATCTGAAGCACTAAGG 1811
Query 1740 GATTCGAGCAAGCAGAGACTCTTGGATGCGTTGACACGAGTACTTCAGCTGCTTGCCTGT 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1812 GATTCGAGCAAGCAGAGACTCTTGGATGCGTTGACACGAGTACTTCAGCTGCTCGCCAGT 1871
Query 1800 GTGGAGGAGATTGATTCCCAGAAAGGATCCGAGTTTCTTGAAAATGAGTGCTATCGAAAA 1859
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1872 GTAGAGGAGATTGATTCCCAGAAAGGATCTGAGTTTCTTGAAAATGAGTGCTATAGAAAA 1931
Query 1860 TATAGCAAAGCAGGGAAATCGTTTTACTACTCGCAGATAGCGAGTACTGTGAGATGGCTA 1919
|||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1932 TATAGCAAAGCAGGAAAAACGTTTTACTACTCGCAGATAGCGAGTACAGTGAGATGGCTA 1991
Query 1920 GGAACCGCAAGCAGAGATGAGCTAATGACCCGACTTAGCTCAGTGGTCAGTTTGGCTAGA 1979
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1992 GGAACTGCAAGCAGAGATGAACTAATGACCCGACTTAGCTCAGTGGTCAGTTTGGCTAGA 2051
Query 1980 GAGCAAGAGCCATTAGAAGAGCCGTTGCTGGCT-ACTGAACCGGTGGAGAACATAGAGGA 2038
|| |||||||||||||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct 2052 GAACAAGAGCCATTAGAAGAGCCGTTGCTGG-TGACTGAACCAGCGGAGAACATAGAGGA 2110
Query 2039 AGAAGATGATGGTAAGACTAACACGGTCGAGTCAAGGGTTGATGAACCGACACAAGAGCT 2098
|||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 2111 AGAAAATGATGGTAACACTAACACGGTCGAGTCATGGGTGGATGAACCGACACAAGAGCT 2170
Query 2099 AGTGGTGAGTCCGATCCTTTCGCCTATAAGGCTTCCACAAGTTCCATCATTCTCAGAGTT 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2171 AGTGGTGAGTCCGATCCTTTCGCCTATAAGGCTTCCACAAGTTCCATCATTCTCAGAGTT 2230
Query 2159 TGTTAACCGGAGAAAAATAAAACAAAACACATTGATAGATAAATCTTCTGAAGGTTTTGA 2218
||||||||||||||| || ||||||||||||| |||||||||||||| |||||| |||||
Sbjct 2231 TGTTAACCGGAGAAAGATGAAACAAAACACATCGATAGATAAATCTTATGAAGGATTTGA 2290
Query 2219 TGACAAGAAACCGGCAAAGATAATGAAGCTTCAATAAATAAAAATGTGCTAAACCCTCA- 2277
||||||||||||||||||||||||||||||||||||||| | | ||| || |
Sbjct 2291 TGACAAGAAACCGGCAAAGATAATGAAGCTTCAATAAATTGT--T-TACTAG-CCAAAAA 2346
Query 2278 CGATTTTTGTTCACTAGCCAAAAACGTTTTTTCCAGTTTCATTTGTAGTTTAGCTTTAGC 2337
|| ||||| || | |||| ||| | ||| | ||||||||||||||||
Sbjct 2347 CGTTTTTT-TT---T--CCAA-----TTT---C---TTT--T--GTAGTTTAGCTTTAGC 2385
Query 2338 ATTGGCCCATTTGTCTCTTAAAGTCGTAACATACACAATAATTAGTATTCCACCTGATTG 2397
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2386 ATTGGCCCATTTGTCTGTTAAAGTCGTAACATACACAATACTTAGTGTTCCACCTGATTG 2445
Query 2398 AATAGACTTACTGAAGGT 2415
|||||||||||||| |||
Sbjct 2446 AATAGACTTACTGATGGT 2463
Score = 508 bits (275), Expect = 6e-143
Identities = 305/319 (96%), Gaps = 3/319 (1%)
Strand=Plus/Plus
Query 56 AAATATCGTCTCTAAAAATTTTTTAGTTTCCTCCAGGCGTTG-ATAGGTG-ATCAGAGAT 113
|||||||||||||| |||||| |||||||| || || ||||| ||||||| || | ||||
Sbjct 34 AAATATCGTCTCTACAAATTTGTTAGTTTCGTCGAGACGTTGAATAGGTGAAT-ATAGAT 92
Query 114 ATGAAGAAATCGCCGTTGCCGGTGCAGAATGTGCAGAGCTCCGATAAGAACGTTGCCGGA 173
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 93 ATGAAGAAATCGCCGTTGCCGGTGCAGAATGTGCACAGCTCCGATAAGAACGTTGCCGGA 152
Query 174 AAAGAAGCATTGGTGAAGCTTTTGAGATGGCATTTCGGTCATGCAGATTTCAGAGGGAAG 233
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 153 AAAGAAGCATTGGTGAAGCTTTTGAGATGGCATTTCGGTCACGCAGATTTCAGAGGGAAG 212
Query 234 CAATTGGAGGCTATTCAAGCTGTTGTATCTGGAAGGGATTGCTTTTGCTTGATGCCAACG 293
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 213 CAATTGGAGGCTATTCAAGCTGTTGTCTCTGGAAGGGATTGCTTTTGCTTGATGCCTACG 272
Query 294 GGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTT 353
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GAAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTT 332
Query 354 GTTGTGTCTCCTTTGATTG 372
|||||||||||||||||||
Sbjct 333 GTTGTGTCTCCTTTGATTG 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90997595305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5