BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35750.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491071 jgi|Araly1|491071|fgenesh2_kg.7__504__AT4G35750.1 1432 0.0
> Ahg491071 jgi|Araly1|491071|fgenesh2_kg.7__504__AT4G35750.1
Length=1138
Score = 1432 bits (775), Expect = 0.0
Identities = 1048/1167 (90%), Gaps = 70/1167 (6%)
Strand=Plus/Plus
Query 1 AAGAGCCCGTCGTTTCTCCCATTACCCTCCAATTAATACACTAttttttttatttttttG 60
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 1 AAGAGCCCGTCGTTTCTCCCATTACCCTCCAATTAATACACTA-GTATTTTCCTTTTTTG 59
Query 61 TCTTTCCCTTTTTAAAATGATCATCATCTTCTTCTTCACTCGCCTCAATTT-TTGTT-CC 118
|||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||
Sbjct 60 TCTTTCCCTTTTTAAAATGATCATCA---TCTTCTTCACTCGCCTC-ATTTGTTGTTCCC 115
Query 119 --CTTCTTCTTCTATAATTCAACTGTGAATTTCACCGACGAAACAAAAAagagagagaga 176
||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 116 TTCTTCTTCTTCTGTAATTCAACTGTGAATTTCACCGACGAAAC-----------A-AGA 163
Query 177 gagagagaAACGATGAGTTCTCAGATTTCGGAGATTGAACAAGAGCAGCTGATCGAGAAG 236
|| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 164 GATTGAGAAACGATGAGTTCTCAGATTTCGGAGATCGAACAAGAGCAGCTTATCGAGAAG 223
Query 237 CTTGAGATCTTCAAGATCCATGGCAGAGACAAACGTGGCCGTAAGATCCTTCGTATTATC 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CTTCAGATCTTCAAGATCCATGGCAGAGACAAACGTGGCCGTAAGATCCTTCGTATTATC 283
Query 297 GGAAAATTCTTCCCAGCTCGATTTCTGTCACTGGATGTGTTGAAGAAGTATCTAGAGGAG 356
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 284 GGCAAATTCTTCCCAGCTCGATTTCTGTCACTGGATGTGTTAAAGAAGTATCTAGAGGAG 343
Query 357 AAGATATTTCCTCGATTAGGTAGAAAACCATTCGCCGTACTCTACGTCCACACCGGCGTA 416
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 344 AAGATCTTTCCTCGATTAGGTAGAAAACCATTCGCCGTACTTTACGTCCACACCGGTGTA 403
Query 417 CAGAGAAGCGAGAACTTCCCAGGTATCTCAGCTC-TACGAGCGATCTACGACGCAATTCC 475
||||| |||||||| ||||| || |||||||||| || |||||||||||||||| |||||
Sbjct 404 CAGAGGAGCGAGAATTTCCCCGGAATCTCAGCTCTTA-GAGCGATCTACGACGCGATTCC 462
Query 476 GGTAAACGTCAGAGACAATCTTCAGGAGGTTTACTTCCTCCATCCAGGTCTTCAATCACG 535
||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 463 GGTCAACGTCAGAGACAATCTCCAGGAGGTTTACTTTCTGCATCCAGGTCTTCAATCACG 522
Query 536 TCTCTTCCTCGCCACCTGCGGCCGATTTCTATTTTCCGGCGGGTTGTACGGGAAGCTGAG 595
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 523 TCTCTTCCTCGCCACTTGCGGCCGATTTCTCTTCTCCGGCGGGTTGTACGGGAAGCTGAG 582
Query 596 GTACATAAGCAGAGTTGATTATCTGTGGGAACATGTGAGGAGGAATGAGATAGAGATGCC 655
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 583 GTACATAAGCAGAGTTGATTATCTGTGGGAACATGTGAGGAGGAACGAGATAGAGATGCC 642
Query 656 GGAGTTTGTATACGATCACGATGATGATCTGGAGTATCGTCCGATGATGGATTACGGTCA 715
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 643 GGAGTTTGTGTACGATCACGATGATGATTTGGAGTATCGTCCGATGATGGATTACGGTCA 702
Query 716 AGAAAGCGATCACGCGAGGGTTTTCGCCGGAGCCGCCGTGGATTCATCAGTCTCAAGTTT 775
||| ||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 703 AGAGAGCGACCACGCTAGAGTTTTCGCCGGAGCCACCGTGGATTCATCAGTCTCAAGTTT 762
Query 776 CTCCATGAGGTGTATCTCATAGCGTAAAAGGCTAAAACTCCACC-C--ACTA--GA-T-A 828
|||||||||||||||||||||||||||||||||||||||||||| | |||| || | |
Sbjct 763 CTCCATGAGGTGTATCTCATAGCGTAAAAGGCTAAAACTCCACCACCCACTACAGAATGA 822
Query 829 T--CGGATCGTATCTTATAAACCATATAAT-ATACGA-ATACGATTAATAATATATCAAA 884
| ||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||
Sbjct 823 TATCGGATCGTATCTTATAAACCATATAATCATATAATATACGATTAATAATATATGAAA 882
Query 885 AAGATTGGAAATA--G--G-TGTGCTTTTTGAAATTAGTGAGCGTTTTTTATGgaaaaga 939
||||||| ||||| | | |||||||||| ||| ||||||||||||||||||||||||
Sbjct 883 AAGATTGCAAATACAGTAGGTGTGCTTTTTCAAA--AGTGAGCGTTTTTTATGGAAAAGA 940
Query 940 aaagaaaagaaagCAGTTGGCGTCTGGATAAAGGGAA-GGAGGAGAAtctttagattttt 998
||||||| | |||||||||| ||||||| ||||| || |||||||||||||||||||
Sbjct 941 AAAGAAA-G----CAGTTGGCGTTTGGATAA-GGGAAAGGGGGAGAATCTTTAGATTTTT 994
Query 999 tctttaatctgtttttcttttgtcttgattagtttttt---ctttaGTGGTGGTGG---T 1052
|||| ||| | ||||| ||| ||||| |||| |||||| ||||||||||||||| |
Sbjct 995 TCTTAAATAT-TTTTT-TTT-GTCTTAATTAATTTTTTTTTCTTTAGTGGTGGTGGACCT 1051
Query 1053 --TG-T-G--AGTT-AGTGTGTAAAATGTATAT------TGTCATATGTGAATTTAATAA 1099
|| | | |||| |||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1052 GGTGGTTGTGAGTTTAGTGTGGAAAATGTATATGGGAAATGTCATATGTGAATATAATAA 1111
Query 1100 TAAGTCCTTTTGTAAGATGATCAAGGG 1126
||||||||||||||||||||| |||||
Sbjct 1112 TAAGTCCTTTTGTAAGATGATTAAGGG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5