BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35760.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491070 jgi|Araly1|491070|fgenesh2_kg.7__503__AT4G35760.1 2143 0.0
> Ahg491070 jgi|Araly1|491070|fgenesh2_kg.7__503__AT4G35760.1
Length=1471
Score = 2143 bits (1160), Expect = 0.0
Identities = 1306/1377 (95%), Gaps = 8/1377 (1%)
Strand=Plus/Plus
Query 11 AGATGATGAAGTTAACAATGGTGGAATAGCGATTCTTCGACGACGATGATGGCGAGGTTT 70
||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AGAAGATGAAGTTATCAACGGTGGAATAGCGATTCTTCGACGACGATGATGGCGAGGTTT 61
Query 71 GTTTCTGTGTCGTCTTGTCAGTTTCATTTCGGCTTCCGTGAGGTTTCTCCTCCGTCGGTA 130
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 62 GTTTCTGTGTCGTCTTGTCAGTTTCATTTCGGCTTCCGTGAGGTTCCTCCTCCGTCGGTA 121
Query 131 ACTTCTTATCCTAGACGATTCGAGGTCTCTGATCGGAGATTTCCTGCGATTCCGATTAAA 190
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 122 ACTTCTTATCCGAGACGATTCGAGGTCTCTGATCGGAGATTTCCTGCGATTTCGATCAAA 181
Query 191 TGTTCTTCATCTGAGCCGGAAAACGGTGAGGATTCGGCACCGTCGCTGTCTTCCTCCTCC 250
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 182 TGTTCTTCATCTGAGCCGGAAAATGGTGAGGATTCGGCGCCGTCGCTGTCTTCCTCCTCA 241
Query 251 TCATCGTCTACAAGTGAAGTATCTACTAGTAACAGTTCGACATACAACTGGTACACCGGA 310
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 242 TCGTCGTCTACAAGTGAAGTATCTACTAGTGACAGTTCGACATACAACTGGTACACTGGA 301
Query 311 ATCGGCGGTATTGGGATGTTAGACACTGCGTATTTGACTTACCTCAAGGTCACTGGCTCC 370
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATCGGTGGTATTGGAATGTTAGACACTGCGTATTTGACTTACCTCAAGGTCACTGGCTCC 361
Query 371 GATGCGTTTTGCCCTATTGGTGGTGGCACTTGCGGTGATGTCCTCAACAGCGATTATGCC 430
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 362 GATGCGTTTTGCCCGATTGGTGGTGGCACTTGCGGCGATGTCCTGAACAGCGATTATGCA 421
Query 431 GTCGTTTTCGGTGTTCCTCTTCCAGTGATTGGATTTGTTATGTATGGCGTAGTAACCGCT 490
|||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||
Sbjct 422 GTCGTTTTCGGTGTTCCTCTCCCAGTGATTGGATTTGTCATGTATGGCTTAGTAACTGCT 481
Query 491 CTAAGTGCAGAGCTTGGGGAAGGGAATCTACCTTTTGGAATCAGTAAGAGCAATGGGCGT 550
||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 482 CTAAGCGCAGAGCTTGGGGAAGGGAATCTGCCTTTTGGAATCAGTAAGACCAATGGGCGT 541
Query 551 TTCGCGTTATTTGGGATCACGACTGCAATGGCATCTGCTAGTGCATATTTCCTGTATATC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TTCGCGTTATTTGGGATCACGACTGCAATGGCATCTGCTAGTGCATATTTCCTGTATATC 601
Query 611 CTTAGCACAAAACTCTCAGGATCATCATGCCTGTATTGTCTGGTGTCTGCTTTCTTATCA 670
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 602 CTTAGTACAAAACTCTCAGGATCATCATGTCTGTATTGTCTGGTGTCTGCTTTCTTATCA 661
Query 671 TTTAGTCTATTTTTCCTCTCTGTAAAGGATGTGAAGTTGCAAGAAATACAGCAAGTTGTA 730
|||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 662 TTTACTCTATTTTTCCTCTCTTTAAAGGATGTGAAATTGCAAGAAATACAGCAAGTTGTT 721
Query 731 GGATTGCAGATATGCTTAGCAATCATAGTAGTTGCCTCCTTGACTGCTTCTTACAGTACT 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGATTGCAGATATGCTTAGCAATCATAGTAGTTGCCTCCTTGACTGCTTCTTACAGTACT 781
Query 791 GCTCAACCAATCCCTTCACGCTCTGGTGACATTGAACTGCCATATTTTAGAACAGAGATC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GCTCAACCAATCCCTTCACGCTCTGGTGACATTGAACTGCCATATTTTAGAACAGAGATC 841
Query 851 AGTTCATCATCGAGCCCTTATGCTATTGCTTTAGCAAAACATCTAAACTCCATTGGAGCT 910
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 842 AGTTCATCATCGAGCCCTTATGGTATTGCTTTAGCGAAACATCTAAACTCCATTGGAGCT 901
Query 911 AAAATGTATGGGGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGATGTTTGGAAGA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AAAATGTATGGGGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGATGTTTGGAAGA 961
Query 971 GAAGCGGCAAAAGAACTGAACTACGTGGAATGTTTTCCGGATGGATATAAGAAAGGAACT 1030
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 962 GAAGCGGCAAAACAACTGAACTACGTGGAATGTTTTCCTGATGGATATAAGAAAGGAACT 1021
Query 1031 AAGATACTCAAGGCATGTGCAGATGCTGCGATCGAAGGATTCCCAACATGGATAATAAAT 1090
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1022 AAGATACTCAAGGCATGTGCAGATGCTGGGATCGAAGGATTCCCAACATGGATAATAAAT 1081
Query 1091 GATAAGGTCTTAAGCGGAGAAATAGAACTCGCTGAACTAGCGGAGATGACTGGATTCAGC 1150
||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1082 GATCAGGTCTTAAGCGGAGAAATAGAACTCGCTGAACTAGCAGAAATGTCTGGATTCAGC 1141
Query 1151 CTTGATCAGGCAAATGAGACCAATCAACTTCAGTAAATTTTGTATTGGTGCAGAAAATAT 1210
|||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1142 CTTGATCAGGCAAATGCGGCCAATCAACTTCAGTAAATTTTGTATTGTTGCAGAAAATAT 1201
Query 1211 TAAGGTGAATCCGTAAATGTTGTTTACTTGATCCTCCTGATAGCTATAGGGTGTTCTATA 1270
||||||||||||||||||||| ||| |||||||| | | | |||||||| |||||||
Sbjct 1202 TAAGGTGAATCCGTAAATGTTCTTTGCTTGATCCG--TAA-A--TATAGGGTATTCTATA 1256
Query 1271 CAAATTCAAGTAATGAAAGTGCTTATTGTTGCCATAGGAGGTTACAACTTCATCTGTATC 1330
|||| ||||| || ||||| ||||||||||||||||||||| | ||||||| | ||||
Sbjct 1257 GAAATGCAAGTGATTAAAGTACTTATTGTTGCCATAGGAGGTCATTACTTCATGTATATC 1316
Query 1331 ACTTAGCCTAC-AC-CA-GAGCATCACTATTTTATAATTGAAAGATTCATAGGTTCT 1384
|||||||||| || | ||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 TCTTAGCCTACTACACCTGAGCATCACTATTTTATCGTTGAAAGATTCATAGGTTCT 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5