BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35770.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491067 jgi|Araly1|491067|fgenesh2_kg.7__500__AT4G35770.1 1057 0.0
> Ahg491067 jgi|Araly1|491067|fgenesh2_kg.7__500__AT4G35770.1
Length=728
Score = 1057 bits (572), Expect = 0.0
Identities = 696/751 (93%), Gaps = 27/751 (4%)
Strand=Plus/Plus
Query 1 GACATAAAACTTGCTGACGTGACACCCATACC-TTTGTGTCTGTATGTATTATATAAACG 59
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GACATAAAACTTGCTGACGTGACACCCATACCTTTTGTGTCTGTATGTATTATATAAA-- 58
Query 60 CTATAGAACTAAGAGAAGAAGTATCTAAGTAGCATCAAAGCATTCTAAAAGAAGTTTCAA 119
| | || ||||||| |||||| |||||||||||||||||||| | ||
Sbjct 59 C----G--CT-AGAGAAG-AGTATCGAAGTAGCATCAAAGCATTCT------A-----AA 99
Query 120 AGAAGAAGTGAAAATGGAAACCACTGCTTTTAACACAACATCACGAATTGGAAACTGGTC 179
||||||| |||||||||||| ||||| ||||||||||||||| ||||||||| ||||||
Sbjct 100 AGAAGAA--GAAAATGGAAACTACTGCCTTTAACACAACATCAAGAATTGGAAGCTGGTC 157
Query 180 ATCGGCTATTTCTCCACCTCTACAAACATGTGGATCTTTCAAGTGCCAATTACCAACACG 239
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 158 ATCAGCTATTTCTCGACCTCTACAAACATGTAGATCTTTCAAGTGCCAATTACCAACACG 217
Query 240 AAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATGGAGG-AA--AGCAAC 296
||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 218 AAGAGGTGTTATTGTAGCTGATCTTCGAAACTCCAACTTCCGATGGAGGAAAGCAGCAAC 277
Query 297 GACAACAAGCAGAGGAAATGTTGCAGCAGAGGCAGTTAAAATTCCTACGTCAGTACCAGT 356
|||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 278 AACAACAAGCAGAGGGAATGTTTCAACAGAGGCAGTTAAAATTCCTACGTCAGTACCAGT 337
Query 357 AAGAGTGGCGCGTGAGCTAGCTCAAGCAGGATACCGCTATCTCGACGTGAGGACACCAGA 416
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 338 AAGAGTGGCGCGTGAGCTAGCTCAAGCAGGATACCGGTATCTCGACGTTAGGACACCAGA 397
Query 417 CGAATTCAGCATCGGACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGG 476
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 398 CGAATTCAGCATCGGACACCCAACTAGAGCCATCAACGTACCTTACACGTACAGAGTCGG 457
Query 477 ATCAGGAATGGTTAAGAACCCGAGTTTTCTAAGACAGGTCTCGTCCCACTTCAGGAAACA 536
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 458 ATCAGGAATGGTTAAGAACCCGAGTTTTCTAAGGCAGGTCTCGTCCCACTTCAGGAAACA 517
Query 537 CGATGAAATCATAATCGGTTGTGAGAGCGGTCAAATGTCATTTATGGCCTCAACTGATCT 596
||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 518 CGACGAAATCATCATCGGTTGTGAGAGCGGTCAAATGTCATTCATGGCTTCAACTGATCT 577
Query 597 TCTCACTGCTGGCTTCACGGCGATCACAGACATTGCTGGAGGATACGTCGCTTGGACAGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TCTCACTGCTGGCTTCACGGCGATCACAGACATTGCTGGAGGATACGTCGCTTGGACAGA 637
Query 657 GAATGAGCTGCCGGTAGAAGAGTGAAAACAATCATAGCCATATCACCTCCTGTAATTATC 716
||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||
Sbjct 638 GAATGAGCTGCCGGTAGAAGAGTGACAACAAACATAACCGTATCACCTCCTGTAATTATC 697
Query 717 AATAAATTCTGTAGATGTTCTCAACGCAAGT 747
|||||||||||||||||||||||| ||||||
Sbjct 698 AATAAATTCTGTAGATGTTCTCAATGCAAGT 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5