BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G35783.1

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944303 jgi|Araly1|944303|scaffold_700532.1                        313    7e-85


> Ahg944303 jgi|Araly1|944303|scaffold_700532.1
Length=229

 Score =  313 bits (169),  Expect = 7e-85
 Identities = 195/207 (94%), Gaps = 3/207 (1%)
 Strand=Plus/Plus

Query  189  AAAGAGAAGAGAACAATTATGGGGCAATGCTCATCGGCGACAAAGATGAGGAGAAAGAGG  248
            ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  3    AAAGACAAGAGAACAATTATGGGGCAATGCTCATCGACGACGAAGATGAGGAGAAAGAGG  62

Query  249  AAAAGGGAAGAAGAATGTTGCAGAGAATCAATGGAGAGGAGGAATAAAGGATGTTTAGCC  308
            ||||||||||||||| ||||||||||||||||||||||||  | ||||||||||||||| 
Sbjct  63   AAAAGGGAAGAAGAAGGTTGCAGAGAATCAATGGAGAGGA--A-TAAAGGATGTTTAGCT  119

Query  309  ATGGTGAAGGAGAGACGTTCTAGGTTTTATATAGCTAGAAGATGTATTCTTATGTTGCTT  368
            |||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||
Sbjct  120  ATGGTGAAGGAGAGGCGTTCTAGGTTTTATATCGCCAGAAGATGTATTCTTATGTTACTT  179

Query  369  TGTTGGCACAAATACGCCAATTCTTGA  395
            |||||||||||||||||||||||||||
Sbjct  180  TGTTGGCACAAATACGCCAATTCTTGA  206



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14155723519


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5