BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35785.5
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944302 jgi|Araly1|944302|scaffold_700531.1 501 5e-141
Ahg944301 jgi|Araly1|944301|scaffold_700530.1 414 7e-115
> Ahg944302 jgi|Araly1|944302|scaffold_700531.1
Length=327
Score = 501 bits (271), Expect = 5e-141
Identities = 297/309 (96%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 869 GATCGAGAAGGCCGTAGCAGTCGAGGGAGGCACTATGATCGTGATGATTACAGAGACCGT 928
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 20 GATCGAGATGGCCGTAGCAGTCGAGGGAGGCACTATGATCGTGATGATTATAGAGACCGT 79
Query 929 AGGTCACCAAGACGCGACTATTCACCTCGTGATGAAAGAAGGTCTAGAAGAGATCGGTCT 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 AGGTCACCAAGACGCGACTATTCACCTCGTGATGAAAGAAGGTCTAGAAGAGATCGGTCT 139
Query 989 TACTCTCCTCATGgaagaagcccagagagaagatcagagagaaggtctgagaggtcagag 1048
||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||
Sbjct 140 TACTCTCCTCATGGAAGAAGCTCAGAAAGAAGATCAGAGAGAAGGTCGGAGAGGTCAGAG 199
Query 1049 agaagGTATGAACCCCGTGGCTCGAGATGACCTGTTTTCATCCT-TTTGACAAAGGATTC 1107
||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||
Sbjct 200 AGAAGGTATGAACCCCGTGGCTCGAGATGACCTGTTT-CATCCTCTTT-ACAAAGGATTC 257
Query 1108 AAAAACTTCTCTGTTGATTTAGGTTGTGTAATTGATCATCCTTAAAATAGCACAAAGATT 1167
|| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 258 AACAACAACTCTGTTGATTTAGGTTGTGTAATTGATCATCCGTAAAATAGCACAAAGATT 317
Query 1168 CTGTCAGGC 1176
|||||||||
Sbjct 318 CTGTCAGGC 326
> Ahg944301 jgi|Araly1|944301|scaffold_700530.1
Length=524
Score = 414 bits (224), Expect = 7e-115
Identities = 243/252 (96%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 383 GAAGTGAAGTTGAAAACCCTGGTACCACTCTCTATGTGACTGGCCTATCTACAAGAGTCA 442
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 154 GAAGTGAAGTTGAAAACCCTGGTACCACTCTATATGTAACTGGCCTATCTACAAGAGTCA 213
Query 443 CTGACAAGGATCTTGAAGCACATTTCGCCAAGGAAGGAAAGGTTGCGTCTTGTTTTCTTG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CTGACAAGGATCTTGAAGCACATTTCGCCAAGGAAGGAAAGGTTGCGTCTTGTTTTCTTG 273
Query 503 TGATGGAGCCGCGCACCCGTGTGTCTCGTGGTTTTGCCTTTGTTACAATG-AGCAGCCTT 561
|||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 274 TGATGGAGCCACGCACCCGTGTGTCTCGTGGTTTTGCCTTTGTTACAATGGAT-AGCGTT 332
Query 562 AAAGATGCTGAGCGGTGCATTAAATATCTCAACCAGTCTGTACTAGAAGGCCGATACATA 621
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 333 AAAGATGCTGAGCGGTGCATTAAATATCTCAACCAGTCTGTTCTAGAAGGCCGATACATA 392
Query 622 ACTGTGGAAAGG 633
||||| ||||||
Sbjct 393 ACTGTCGAAAGG 404
Score = 167 bits (90), Expect = 2e-40
Identities = 109/117 (93%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 133 ACCTCTGTTTC-TTCGGCAATGGCGGATTCTCCTCAAAGAAGAAGGGATTCACGATCTCC 191
||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3 ACCTCTGTTTCTTTC-GCAATGGCGGATTCTCCTC---GAAGAAGGGATTCACGATCTCC 58
Query 192 TTCACCCCGAAAAGAACGAGCTAGATCCAGATCCAGGTCTAGGTCCAGGTCTAGATC 248
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 59 TTCACCCCGAAAAGAACGAGCTAGATCCAGGTCCAGGTCTAGATCCAGGTCAAGATC 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5