BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35785.5 Length=1326 Score E Sequences producing significant alignments: (Bits) Value Ahg944302 jgi|Araly1|944302|scaffold_700531.1 501 5e-141 Ahg944301 jgi|Araly1|944301|scaffold_700530.1 414 7e-115 > Ahg944302 jgi|Araly1|944302|scaffold_700531.1 Length=327 Score = 501 bits (271), Expect = 5e-141 Identities = 297/309 (96%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 869 GATCGAGAAGGCCGTAGCAGTCGAGGGAGGCACTATGATCGTGATGATTACAGAGACCGT 928 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 20 GATCGAGATGGCCGTAGCAGTCGAGGGAGGCACTATGATCGTGATGATTATAGAGACCGT 79 Query 929 AGGTCACCAAGACGCGACTATTCACCTCGTGATGAAAGAAGGTCTAGAAGAGATCGGTCT 988 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 AGGTCACCAAGACGCGACTATTCACCTCGTGATGAAAGAAGGTCTAGAAGAGATCGGTCT 139 Query 989 TACTCTCCTCATGgaagaagcccagagagaagatcagagagaaggtctgagaggtcagag 1048 ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| Sbjct 140 TACTCTCCTCATGGAAGAAGCTCAGAAAGAAGATCAGAGAGAAGGTCGGAGAGGTCAGAG 199 Query 1049 agaagGTATGAACCCCGTGGCTCGAGATGACCTGTTTTCATCCT-TTTGACAAAGGATTC 1107 ||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| Sbjct 200 AGAAGGTATGAACCCCGTGGCTCGAGATGACCTGTTT-CATCCTCTTT-ACAAAGGATTC 257 Query 1108 AAAAACTTCTCTGTTGATTTAGGTTGTGTAATTGATCATCCTTAAAATAGCACAAAGATT 1167 || ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 258 AACAACAACTCTGTTGATTTAGGTTGTGTAATTGATCATCCGTAAAATAGCACAAAGATT 317 Query 1168 CTGTCAGGC 1176 ||||||||| Sbjct 318 CTGTCAGGC 326 > Ahg944301 jgi|Araly1|944301|scaffold_700530.1 Length=524 Score = 414 bits (224), Expect = 7e-115 Identities = 243/252 (96%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 383 GAAGTGAAGTTGAAAACCCTGGTACCACTCTCTATGTGACTGGCCTATCTACAAGAGTCA 442 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 154 GAAGTGAAGTTGAAAACCCTGGTACCACTCTATATGTAACTGGCCTATCTACAAGAGTCA 213 Query 443 CTGACAAGGATCTTGAAGCACATTTCGCCAAGGAAGGAAAGGTTGCGTCTTGTTTTCTTG 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 CTGACAAGGATCTTGAAGCACATTTCGCCAAGGAAGGAAAGGTTGCGTCTTGTTTTCTTG 273 Query 503 TGATGGAGCCGCGCACCCGTGTGTCTCGTGGTTTTGCCTTTGTTACAATG-AGCAGCCTT 561 |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 274 TGATGGAGCCACGCACCCGTGTGTCTCGTGGTTTTGCCTTTGTTACAATGGAT-AGCGTT 332 Query 562 AAAGATGCTGAGCGGTGCATTAAATATCTCAACCAGTCTGTACTAGAAGGCCGATACATA 621 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 333 AAAGATGCTGAGCGGTGCATTAAATATCTCAACCAGTCTGTTCTAGAAGGCCGATACATA 392 Query 622 ACTGTGGAAAGG 633 ||||| |||||| Sbjct 393 ACTGTCGAAAGG 404 Score = 167 bits (90), Expect = 2e-40 Identities = 109/117 (93%), Gaps = 5/117 (4%) Strand=Plus/Plus Query 133 ACCTCTGTTTC-TTCGGCAATGGCGGATTCTCCTCAAAGAAGAAGGGATTCACGATCTCC 191 ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 3 ACCTCTGTTTCTTTC-GCAATGGCGGATTCTCCTC---GAAGAAGGGATTCACGATCTCC 58 Query 192 TTCACCCCGAAAAGAACGAGCTAGATCCAGATCCAGGTCTAGGTCCAGGTCTAGATC 248 |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 59 TTCACCCCGAAAAGAACGAGCTAGATCCAGGTCCAGGTCTAGATCCAGGTCAAGATC 115 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49597915017 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5