BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35810.1
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328172 jgi|Araly1|328172|fgenesh1_pm.C_scaffold_7000399 1375 0.0
> Ahg328172 jgi|Araly1|328172|fgenesh1_pm.C_scaffold_7000399
Length=873
Score = 1375 bits (744), Expect = 0.0
Identities = 831/874 (95%), Gaps = 2/874 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAGAAACCGAAGCAGCTCCGTAA-CAAGCCGCGTAAATCTTTTTCGACGCAAAC 59
||||||||||||||||| || |||||||| | |||||||||||||||||||||||||| |
Sbjct 1 ATGGCGAAGAAACCGAAACACCTCCGTAATC-AGCCGCGTAAATCTTTTTCGACGCAAGC 59
Query 60 TTTCACAGTTGTCGTACTTGTACTCTTTGTCATTTTGATCCTTGTCGGTCTCGGAATCTT 119
|||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 60 TTTCACAGTTCTCATACTTGGACTCTTTGTCATTTTGATCCTTGTCGGTCTCGGAATCCT 119
Query 120 TTCACTACCCAGCACCAACAAGACCTCTTCTATGCCGATGGATTTGACCACCATTGTACA 179
||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 120 TTCACTACCTAACACCAACAAGAGCTCTTCTAGGCCGATGGATTTGACCACCATTGTACA 179
Query 180 AACGATCCAGGAGAGGGAGAGTTTTGGAGACGAAGAAGACGGTAATGGTGACCGCTGGCT 239
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 AACGATCGAGGAGAGGGAGAGTTATGGAGACGAAGAAGACGGTAATGGTGACCGCTGGCT 239
Query 240 GGAAGTTATCTCCTGGGAGCCTAGAGCTTTTGTTTACCACAACTTCTTGACAAATGAAGA 299
||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 240 CGAAGTTATCTCGTGGGAGCCTAGAGCTTTCGTTTATCACAATTTCTTGACCAATGAAGA 299
Query 300 ATGTGAGCACTTGATTAGCCTTGCGAAACCTAGTATGATGAAATCAAAGGTGGTTGATGT 359
||||||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 300 ATGTGAGCACTTGATCAGTCTTGCTAAACCTAGTATGGTGAAATCAAAGGTGGTTGATGT 359
Query 360 GAAAACCGGAAAGAGCATCGACAGCAGAGTACGAACCAGTTCAGGAACTTTTCTTAACAG 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 GAAAACCGGAAAGAGCATAGACAGCAGAGTACGAACCAGTTCAGGAACTTTTCTTAAAAG 419
Query 420 AGGACATGACGAAATAGTGGAAGAGATTGAGAATAGGATTTCAGATTTCACCTTCATTCC 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGACATGACGAAATCGTGGAAGAGATTGAGAATAGGATTTCAGATTTCACCTTCATTCC 479
Query 480 TCCAGAAAATGGAGAGGGGCTGCAAGTTCTTCATTATGAAGTTGGGCAGAGATATGAGCC 539
| |||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 480 TATAGAAAATGGAGAAGGGCTACAAGTTCTCCATTATGAAGTTGGGCAGAAATATGAGCC 539
Query 540 TCACCATGACTATTTCTTTGATGAGTTCAATGTCAGGAAAGGAGGGCAACGAATTGCTAC 599
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 TCACCATGACTATTTCTTCGATGAGTTCAATGTCAGGAAAGGAGGACAACGAATTGCTAC 599
Query 600 AGTACTAATGTACCTCTCGGATGTCGATGAAGGCGGAGAAACAGTTTTCCCTGCAGCCAA 659
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 600 AGTACTTATGTACCTCTCGGATGTTGATGAAGGCGGCGAAACAGTTTTCCCTGCAGCCAA 659
Query 660 AGGAAACGTTAGTGATGTCCCATGGTGGGACGAGCTCTCACAATGTGGTAAAGAAGGACT 719
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGAAACATTAGTGCTGTCCCATGGTGGGACGAGCTCTCACAATGTGGTAAAGAAGGACT 719
Query 720 CTCTGTTCTGCCAAAGAAGAGAGACGCTTTACTCTTCTGGAGCATGAAGCCTGACGCGTC 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 720 CTCTGTTCTGCCAAAGAAGAGAGATGCTTTACTCTTCTGGAGCATGAAGCCTGACGCCTC 779
Query 780 TCTAGACCCTTCTAGTTTGCATGGTGGTTGTCCAGTGATCAAAGGAAACAAGTGGTCATC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCTAGACCCTTCTAGTTTGCATGGTGGTTGTCCAGTGATCAAAGGAAACAAGTGGTCATC 839
Query 840 AACTAAATGGTTTCACGTTCACGAGTACAATTGA 873
||||||||||||||||||||||||||||||||||
Sbjct 840 AACTAAATGGTTTCACGTTCACGAGTACAATTGA 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32328233616
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5