BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35820.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888480 jgi|Araly1|888480|Al_scaffold_0007_466 907 0.0
> Ahg888480 jgi|Araly1|888480|Al_scaffold_0007_466
Length=738
Score = 907 bits (491), Expect = 0.0
Identities = 541/566 (96%), Gaps = 0/566 (0%)
Strand=Plus/Plus
Query 226 GTTGCTGCTTCGTTACGCTTTCCAAACGAGCGTTGGCTCGAAGTCATAACGAAGGAGCCT 285
|||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 127 GTTGCTGCATCGTTGCGCTTTCCAAGTGAGCGTTGGCTCGAAGTCATAGCGAAGGAGCCT 186
Query 286 AGAGCTTTTGTTTACCATAATTTCTTGGCTCTCTTCTTTAAAATTTGTAAGACAAACGAA 345
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 187 AGAGCTTTCGTTTACCATAATTTCTTGGCTCTCTTCTTTAAATTTTGTAAGACAAACGAA 246
Query 346 GAATGTGATCACTTGATTAGCCTCGCGAAACCTAGTATGGCGAGGTCCAAGGTGCGCAAT 405
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GAATGTGAACACTTGATTAGCCTCGCGAAACCTAGTATGGCGAGGTCCAAGGTGCGCAAT 306
Query 406 GCGTTAACTGGACTTGGTGAAGAAAGCAGCTCACGGACGAGTTCAGGAACTTTTATTAGA 465
||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 307 GCGATAACCGGACTGGGTGAAGAAAGCAGCTCACGGACGAGTTCAGGAACTTTTCTTAGA 366
Query 466 AGTGGACATGACAAAATCGTCAAAGAGATTGAGAAAAGGATTTCAGAATTCACCTTCATT 525
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 367 AAAGGACATGACAAAATCGTGAAAGAGATTGAGAAAAGGATTTCAGAATTCACCTTCATT 426
Query 526 CCTCAAGAAAACGGAGAAACGCTTCAAGTTATCAATTATGAAGTTGGGCAGAAATTTGAG 585
||| |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||
Sbjct 427 CCTGAAGAAAACGGAGAAGCGCTTCAAGTGATCCATTATGAAGTTGGGCAGAAATTTGAG 486
Query 586 CCTCACTTTGACGGATTTCAAAGAATTGCTACGGTTCTTATGTATCTCTCGGATGTTGAT 645
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 487 CCTCACTTTGACGGATTTCAAAGAATTGCTACTGTTCTTATGTATCTCTCGGACGTTGAT 546
Query 646 AAAGGCGGCGAAACAGTTTTCCCTGAAGCCAAAGGAATTAAAAGTAAAAAAGGAGTCTCT 705
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AAAGGCGGCGAAACAGTGTTCCCTGAAGCCAAAGGAATTAAAAGTAAAAAAGGAGTCTCT 606
Query 706 GTTAGACCGAAGAAGGGAGACGCTTTACTCTTTTGGAGCATGAGACCCGACGGGTCTCGA 765
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 607 GTTAGACCGAAGAAGGGAGACGCTTTACTCTTTTGGAGCATGAGACCTGACGGGTCTCAA 666
Query 766 GACCCTTCGAGTAAGCATGGTAAGAG 791
||||| ||||||||||||||||||||
Sbjct 667 GACCCGTCGAGTAAGCATGGTAAGAG 692
Score = 215 bits (116), Expect = 5e-55
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAAGTCGACGTCAGTGTCTACCATACTGTATCTGAGGCAGAGGTTGCAGGGGCTG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTAAGTCGACGTCACTGTCTACCATACTGTATCTGAGGCAGAGGTTGCACGGGCTG 60
Query 61 AAGATATATGAAACTTCAGATCTAATACAGCACATCAACACGTTCGATGAATTAGTCGGT 120
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 61 AAGATATATGAAACTTCAGATCTAATGCAGCACATCAACACGTTCGATGCATTAGTCGGT 120
Query 121 GAACAAGT 128
||||||||
Sbjct 121 GAACAAGT 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5