BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35840.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491055 jgi|Araly1|491055|fgenesh2_kg.7__488__AT4G35840.1 1360 0.0
Ahg931636 jgi|Araly1|931636|scaffold_304093.1 664 0.0
> Ahg491055 jgi|Araly1|491055|fgenesh2_kg.7__488__AT4G35840.1
Length=901
Score = 1360 bits (736), Expect = 0.0
Identities = 840/889 (94%), Gaps = 12/889 (1%)
Strand=Plus/Plus
Query 1 cttctatcttctttctcttc-cttctctcttctcttGTATAAACTCCACTGAGCTCTGTT 59
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 1 CTTCTATCTTCTTTCTCATCTCTTCTCTCTTCTCTTGTATAAGCTCCACTGAGCTCTGTT 60
Query 60 TTTGTTTTTACCGTAGATCGTTTCGAGTCTC--T-T-TAATCTTTGGCGGGTTCCGTaaa 115
|| ||||||||||||||| |||||||||||| | | || ||||||| |||||| ||
Sbjct 61 TTCGTTTTTACCGTAGATTGTTTCGAGTCTCTTTCTCTATTCTTTGGAGGGTTCTGT--- 117
Query 116 aaaaaaaaTGGCCTCTTCTAGATTCCAATCTGGGTTTTGTCCTATCTCTTCGTGTCCCTC 175
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 118 -AAAAAAATGGCATCTTCTAGATTCCAATCTGGGTTTTGTCCTATCTCTTCGTGTCCTTC 176
Query 176 TCTTGAGAATTTCATCGAAAGGATTAAAGACGCATGTCGTTTCACCCTCTCCGCTGTTCT 235
||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 177 TCTTGGGAATTTCGTGGAAAGGATTAAAGACGCATGTCGTTTCACTCTCTCCGCTGTTCT 236
Query 236 AGGGACAATTCTCTCGGCGGTCTTGACTTTCTTCTTCGCTTTAGTGGGCACATTGCTTGG 295
||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 237 AGGGACAATTCTCTCGGCGATCTTGACTTTCTTCTTCGCATTAGTGGGCACACTGCTTGG 296
Query 296 AGCACTTACTGGAGCTTTGATAGGCCAAGAAACCGAAAGTGGGTTTATCCGAGGAGCGGC 355
||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 297 AGCACTTACTGGAGCCTTGATAGGCCAAGAAACCGAGAGTGGATTCATCCGAGGAGCAGC 356
Query 356 GGTTGGAGCCATTTCGGGAGCTGTTTTCTCTATCGAAGTCTTTGAGTCATCTCTTGTTCT 415
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 AGTTGGAGCCATTTCAGGAGCTGTTTTCTCTATCGAAGTCTTTGAATCATCTCTTGTTCT 416
Query 416 TTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTGATTGATGTCATTGTTAG 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 CTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTGATTGATGTCATTGTAAG 476
Query 476 TCTGATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCA 535
||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 477 TCTTATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCGATGCTAAGCGCTGTTCA 536
Query 536 AAGTCAGATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCGG 595
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGTCAGATGGGAGCTGTGGATACAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCGG 596
Query 596 TGGCTCAAAGGGGTTAACAGGAGATTTGGTTGATAAAATACCTAAAATCAAAATCACTGG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGGCTCAAAGGGGTTAACAGGAGATTTGGTTGATAAAATACCTAAAATCAAAATCACTGG 656
Query 656 CAAAAACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGGATTT 715
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 CAAAAACAACTTGGATGCTTCTGGCAACAAAGACTCGTGTTCTGTTTGTCTTCAGGATTT 716
Query 716 TCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTG 776
Query 776 CATAGACAATTGGCTCTTCAGGCACGGATCTTGTCCAATGTGTAGACGCGATCTGTAATC 835
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 CATAGACAATTGGCTATTCAGGCACGGATCTTGTCCAATGTGTAGACGTGATCTGTAATC 836
Query 836 T-CTTTTCTTACCATTTGCACAGCCTCTTCCCTCTCTCTCCTTCTTCTT 883
| |||| |||||||||||||||| |||| |||||||||| |||||||||
Sbjct 837 TTCTTT-CTTACCATTTGCACAGTCTCT-CCCTCTCTCTTCTTCTTCTT 883
> Ahg931636 jgi|Araly1|931636|scaffold_304093.1
Length=763
Score = 664 bits (359), Expect = 0.0
Identities = 599/716 (84%), Gaps = 12/716 (2%)
Strand=Plus/Plus
Query 129 TCTTCTAGATTCCAATCTGGGTTTTGTCCTATCTCTTCGTGTCCCTCTCTTGAGAATTTC 188
|||| ||||||||||||||||||||||||| | || || |||| ||||||| |||||||
Sbjct 39 TCTTATAGATTCCAATCTGGGTTTTGTCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTC 98
Query 189 ATCGAAAGGATTAAAGACGCATGTCGTTTCAC-CCTCTCCGCTGTTCTAGGGACAATTCT 247
||||| ||||||||||||| |||| |||| | |||| |||||| | || || ||| |
Sbjct 99 GTCGAACGGATTAAAGACGCTTGTCATTTC-CTTGTCTCTGCTGTTTTTGGTACCATTAT 157
Query 248 CTCGGCGGTCTTGACTTTCTTCTTCGCTTTAGTGGGCACATTGCTTGGAGCACTTACTGG 307
||||||| ||||||| ||||||||||| ||||||| |||||||| || |||||||| ||
Sbjct 158 CTCGGCGATCTTGACCTTCTTCTTCGCACTAGTGGGAACATTGCTAGGGGCACTTACAGG 217
Query 308 AGCTTTGATAGGCCAAGAAACCGAAAGTGGGTTT-ATCCGAGGAGCGGCGGTTGGAGCCA 366
|||||||||||| |||||||| || ||| ||||| || ||||||| || |||||||||
Sbjct 218 AGCTTTGATAGGTCAAGAAACTGAGAGT-GGTTTCATTAGAGGAGCAGCAATTGGAGCCA 276
Query 367 TTTCGGGAGCTGTTTTCTCTATCGAAGTCTTTGAGTCATCTCTTGTTCTTTGGAAATCTA 426
|||| ||||||||||||||||| || |||||||| ||||| |||| ||| ||||||||
Sbjct 277 TTTCTGGAGCTGTTTTCTCTATTGAGGTCTTTGAATCATCACTTGATCTCTGGAAATCCG 336
Query 427 ATGAGTCACGTTTTGGATGTCTCCTCTACTTGATTGATGTCATTGTTAGTCTGATAAGTG 486
||||||| |||| || ||| | ||||||||||||||||||||||||||||| |||| |
Sbjct 337 ATGAGTCGGGTTTCGGTTGTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCG 396
Query 487 GTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGATGG 546
| |||||||| || ||||| || ||||| ||||||||||||||||| |||||||| ||||
Sbjct 397 GGAGACTTGTACGAGAACGCATTGGTCCTGCAATGCTAAGTGCGGTGCAAAGTCAAATGG 456
Query 547 GAGCTGTGGATTCAAC-TTTCGAAGAGCTCTCGAGTAT-TTTCGATACCGGTGGCTCAAA 604
||||||||||| || | ||| || || | | | || | ||| ||||| || ||||||||
Sbjct 457 GAGCTGTGGATGCAGCCTTT-GATGATCACACTAGCCTCTTT-GATACAGGAGGCTCAAA 514
Query 605 GGGGTTAACAGGAGAT-TTGGTTGATAAAATACCTAAA-ATCAAAATCACTGGCAAAAAC 662
|| ||||||||||| ||| |||| ||||| || ||| || | |||||||||||| ||
Sbjct 515 AGGATTAACAGGAGAACTTG-TTGAGAAAATCCC-AAAGATGACAATCACTGGCAACAAT 572
Query 663 AACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGGATTTTCAACTT 722
||| |||||| ||| |||| |||| | ||||||||||||||||||||||| || |||
Sbjct 573 AACACCGATGCTCCTGAAAACAGAGACCCCTGTTCTGTTTGTCTTCAGGATTTCCAGCTT 632
Query 723 GGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTGCATAGAC 782
|||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 633 GGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGAC 692
Query 783 AATTGGCTCTTCAGGCACGGATCTTGTCCAATGTGTAGACGCGATCTGTAATCTCT 838
||||||||| |||| ||||| ||||| || ||||||||||| || || ||||||||
Sbjct 693 AATTGGCTCCTCAGACACGGTTCTTGCCCGATGTGTAGACGTGACCTTTAATCTCT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5