BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35850.1 Length=1734 Score E Sequences producing significant alignments: (Bits) Value Ahg944293 jgi|Araly1|944293|scaffold_700522.1 2239 0.0 Ahg888473 jgi|Araly1|888473|Al_scaffold_0007_459 350 3e-95 Ahg491053 jgi|Araly1|491053|fgenesh2_kg.7__486__AT4G35860.1 176 5e-43 > Ahg944293 jgi|Araly1|944293|scaffold_700522.1 Length=1375 Score = 2239 bits (1212), Expect = 0.0 Identities = 1319/1371 (96%), Gaps = 5/1371 (0%) Strand=Plus/Plus Query 103 TCACGTGAGCTATGAAGTTCCTCATGCAATCCATTTCTGGGAGGAATCGATCTCTGGTTC 162 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 10 TCACGTGAGCTATGAAGTTCCTCATGCAATCCATTTCTGGTAGGAATCGATCTCTGGTTC 69 Query 163 GAGCTCTAGTTAGTCGGCGTTACTTCGCTTCATCGCCGGAGGAAATCGCAAAGAGAAATT 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 70 GAGCTCTAGTTAGTCGGCGTTACTTCGCTTCATCGCCGGAGGAAATCGCAAAGAAAAATT 129 Query 223 ACGCCAACGATCTGTCGGAATACAACACCGCTGTCAACTCCGTCACAGCTCAGCGCAGGC 282 ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 130 ACGCCAATGATCTGTCGGAATACAACACCGCTGTCCATTCCGTCACAGCTCAGCGCAGGC 189 Query 283 ACTATTTGCTGAGGGATGTTTATGATGATATGAAGCTTGATGGTGTGCAGCCTACAGCTG 342 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 190 ACTATTTGCTGAGGGATGTTTATGATGATATGAAGCTAGATGGTGTGCAGCCTACAGCTG 249 Query 343 ATATCTTCCATTCATTTGTCGTGGGAACGATGAAGGGTGCTCGGTTAAGCGATGCGTTCT 402 |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 250 ATATATTCCATTCTTTTGTTGTGGGAACGATGAAGGGTGCTCGGTTAAGCGATGCTTTCT 309 Query 403 TTTTCCGGGAAGAAATGAAAGCCATGGGGATTGCTCCAGATGTGAACTTGTACAACTTTT 462 ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 310 TTTTCCGTGAAGAAATGAAAGCCATGGGAATTGCTCCTGATGTGAACTTGTACAACTTTT 369 Query 463 TAATTTCCACATGTGGGAAATGCAAGAATGGAAAGGAGGCAATCCGAGTCTATGACGAGA 522 |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 370 TAATCTCCACATGTGGTAAATGCAAGAATGGAAAGGAGGCAATCCGAGTCTACGACGAGA 429 Query 523 TGAAGAGATATGATGTAAAACCAAATGGACAGACCTTTGTCTGCCTGCTCAATGCCTGCG 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 430 TGAAGAGATATGATGTAAAACCAAATGGACAGACCTTTGTCTGCCTGCTCAATGCCTGTG 489 Query 583 CTGTTTCTGGCCAGTTAGATCTTGTATATGCGATAGTTCGGGATATGACTGCTGCTGGTG 642 ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 490 CTGTTTCTGGCCAATTAGATCTTGTGTACGCGATAGTTCGGGATATGACTGCTGCTGGTG 549 Query 643 TTGGTTTGAACCAGTTCTGCTATGCGGGACTCATAACTGCACACTTAAACAAGCAGCCCA 702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 550 TTGGTTTGAACCAGTTCTGCTATGCGGGACTCATAACTGCACACTTAAACAAGCAGCCTA 609 Query 703 GACCAGATAATCTTTCTACTAAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAG 762 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 610 GACCAGATAATCTTTCTACCAAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAG 669 Query 763 CAATTGATTCATCAAGGAAGAGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGC 822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 CAATTGATTCATCAAGGAAGAGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGC 729 Query 823 TGTACAATATTCCAACCGCTGATTATTCCCACAGGACCAGGTTTCTGCAGAGGAATTTGA 882 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 730 TGTACAATATTCCAACCGCTGATTATGCCCACAGGACCAGGTTTCTGCAGAGGAATTTGA 789 Query 883 CTGTGTATCACGTAGCATTCAGTGCTCTCGCTGATCTGAAGGATGTAAAAGCAACGGAAG 942 | || || ||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 790 CCGTCTACCACGTAGCATTCAGTGCTCTCGCTGATATAAAGGATGTAAAAGCAACGGAAG 849 Query 943 CTCTTCTTGAGATGCTTAAGAAAGACGGAAAAGATACTGACACTTACTGCATGCTACAAA 1002 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 850 CTCTTCTTGAGATGCTTAAGAAAGACGGAAAAGACACTGACACTTACTGCGTGCTACAAA 909 Query 1003 TCATGAGGTGCTATCTACATTCGCAAGACTTTGAGAATGGTCTCAAACTGTTTCAAGATT 1062 | ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| Sbjct 910 TTATGAGGTGCTATCTACACTCGCAAGACTTTGAGAATGGTCTCAAAGTGTTTGAAGATT 969 Query 1063 ACATGAGCGCAGACAAAATCCCTGCCATGGAACTATACACGACGCTTATAGAAGGAGCTA 1122 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 970 ACATGAGCGCAGACAAAATCTCTGCCATGGAACTCTACACGACGCTTATAGAAGGAGCTA 1029 Query 1123 TGACAGGATACACCGATAATGGAATGAAGATTGCTCAGGACACTCTGATCCAAATGAACG 1182 |||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||| Sbjct 1030 TGACAGGACACACCGATAATGGAATGAAGATTGCTCAAGACACTCTGGTCAAAATGAACG 1089 Query 1183 AACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAGCCGCTGGTG 1242 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1090 AACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTATTAAAAGCCGCTGGTG 1149 Query 1243 AAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAGCTCGGAATA 1302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1150 AAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAGCTCGGAATA 1209 Query 1303 TTCTACCAACACTAGCTGCTGTTGAAGCTTACTACAAGGGCTTGAAAGAACGCGAAATAC 1362 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1210 TTCTACCAACACTAGCTGCTGTTGAAGCTTATTACAAGGGCTTGAAAGAACGTGAAATAC 1269 Query 1363 CAGAGGATGATCCGAGACTGATGTTAGTGACGCGAACATACAATAACTTGCGGCTTAGGG 1422 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1270 CAGAGGATGATCCGAGACTGATGTTAGTGACGCGTACATACAATAACTTGCGGCTTAAGG 1329 Query 1423 AAGGGACATTACCTAATAGGCGTTAAAGCAAAGGGACCAAGAGGAAGAAAG 1473 |||||||||||||||||||||||||| | || |||||||||||||||| Sbjct 1330 AAGGGACATTACCTAATAGGCGTTAATG----GG-ACCAAGAGGAAGAAAG 1375 > Ahg888473 jgi|Araly1|888473|Al_scaffold_0007_459 Length=675 Score = 350 bits (189), Expect = 3e-95 Identities = 199/204 (98%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1174 AAATGAACGAACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAG 1233 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 AAATGAATGAACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAG 514 Query 1234 CCGCTGGTGAAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAG 1293 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 515 CCGCTGGTGAAAAGACGGGAGGGTACATAGTTGCAAATATGATATGGGATCTGATGCTAG 574 Query 1294 CTCGGAATATTCTACCAACACTAGCTGCTGTTGAAGCTTACTACAAGGGCTTGAAAGAAC 1353 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 575 TTCGGAATATTCTACCAACACTAGCTGCTGTTGAAGCTTATTACAAGGGCTTGAAAGAAC 634 Query 1354 GCGAAATACCAGAGGATGATCCGA 1377 | |||||||||||||||||||||| Sbjct 635 GTGAAATACCAGAGGATGATCCGA 658 Score = 257 bits (139), Expect = 2e-67 Identities = 141/142 (99%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 723 AAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAGCAATTGATTCATCAAGGAAG 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 AAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAGCAATTGATTCATCAAGGAAG 165 Query 783 AGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGCTGTACAATATTCCAACCGCT 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 AGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGCTGTACAATATTCCAACCGCT 225 Query 843 GATTATTCCCACAGGACCAGGT 864 |||||| ||||||||||||||| Sbjct 226 GATTATGCCCACAGGACCAGGT 247 Score = 233 bits (126), Expect = 3e-60 Identities = 148/159 (93%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1008 AGGTGCTATCTACATTCGCAAGACTTTGAGAATGGTCTCAAACTGTTTCAAGATTACATG 1067 |||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 244 AGGTGCTATCTACACTCGGAAGACTTTGAGAATGGTCTCAAATTGTTTGAAGATTACATG 303 Query 1068 AGCGCAGACAAAATCCCTGCCATGGAACTATACACGACGCTTATAGAAGGAGCTATGACA 1127 |||||||| |||||||||||||||||| | |||||||||| |||||||||| |||||||| Sbjct 304 AGCGCAGATAAAATCCCTGCCATGGAATTCTACACGACGCCTATAGAAGGACCTATGACA 363 Query 1128 GGATACACCGATAATGGAATGAAGATTGCTCAGGACACT 1166 ||| |||||||||||||||||||||||||||| |||||| Sbjct 364 GGACACACCGATAATGGAATGAAGATTGCTCAAGACACT 402 > Ahg491053 jgi|Araly1|491053|fgenesh2_kg.7__486__AT4G35860.1 Length=1045 Score = 176 bits (95), Expect = 5e-43 Identities = 116/126 (92%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 1607 GATTTGATTTCAATTACTTAACCTTGAGAGCTTCATAC-AAAGCGACAACGTTTTAAATA 1665 ||||||||||||||| |||||| ||||||||||||| | ||||| |||| |||||||||| Sbjct 1045 GATTTGATTTCAATTGCTTAACGTTGAGAGCTTCATGCAAAAGCAACAATGTTTTAAATA 986 Query 1666 AGCCAACGCCTGTTTGGTTTATAAAGATCAGCCTGTTCACTCTTAAATGCACCCGTTTGG 1725 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| Sbjct 985 AGCCAACGCCTGTTTGGTTTATAAAGATCAGGCTGTTCACTCTCAAATGCACCGGTTTGG 926 Query 1726 TTTTTT 1731 ||||| Sbjct 925 GTTTTT 920 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65058138460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5