BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35850.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944293 jgi|Araly1|944293|scaffold_700522.1 2239 0.0
Ahg888473 jgi|Araly1|888473|Al_scaffold_0007_459 350 3e-95
Ahg491053 jgi|Araly1|491053|fgenesh2_kg.7__486__AT4G35860.1 176 5e-43
> Ahg944293 jgi|Araly1|944293|scaffold_700522.1
Length=1375
Score = 2239 bits (1212), Expect = 0.0
Identities = 1319/1371 (96%), Gaps = 5/1371 (0%)
Strand=Plus/Plus
Query 103 TCACGTGAGCTATGAAGTTCCTCATGCAATCCATTTCTGGGAGGAATCGATCTCTGGTTC 162
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 10 TCACGTGAGCTATGAAGTTCCTCATGCAATCCATTTCTGGTAGGAATCGATCTCTGGTTC 69
Query 163 GAGCTCTAGTTAGTCGGCGTTACTTCGCTTCATCGCCGGAGGAAATCGCAAAGAGAAATT 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 70 GAGCTCTAGTTAGTCGGCGTTACTTCGCTTCATCGCCGGAGGAAATCGCAAAGAAAAATT 129
Query 223 ACGCCAACGATCTGTCGGAATACAACACCGCTGTCAACTCCGTCACAGCTCAGCGCAGGC 282
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 130 ACGCCAATGATCTGTCGGAATACAACACCGCTGTCCATTCCGTCACAGCTCAGCGCAGGC 189
Query 283 ACTATTTGCTGAGGGATGTTTATGATGATATGAAGCTTGATGGTGTGCAGCCTACAGCTG 342
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 190 ACTATTTGCTGAGGGATGTTTATGATGATATGAAGCTAGATGGTGTGCAGCCTACAGCTG 249
Query 343 ATATCTTCCATTCATTTGTCGTGGGAACGATGAAGGGTGCTCGGTTAAGCGATGCGTTCT 402
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 250 ATATATTCCATTCTTTTGTTGTGGGAACGATGAAGGGTGCTCGGTTAAGCGATGCTTTCT 309
Query 403 TTTTCCGGGAAGAAATGAAAGCCATGGGGATTGCTCCAGATGTGAACTTGTACAACTTTT 462
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 310 TTTTCCGTGAAGAAATGAAAGCCATGGGAATTGCTCCTGATGTGAACTTGTACAACTTTT 369
Query 463 TAATTTCCACATGTGGGAAATGCAAGAATGGAAAGGAGGCAATCCGAGTCTATGACGAGA 522
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 370 TAATCTCCACATGTGGTAAATGCAAGAATGGAAAGGAGGCAATCCGAGTCTACGACGAGA 429
Query 523 TGAAGAGATATGATGTAAAACCAAATGGACAGACCTTTGTCTGCCTGCTCAATGCCTGCG 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 430 TGAAGAGATATGATGTAAAACCAAATGGACAGACCTTTGTCTGCCTGCTCAATGCCTGTG 489
Query 583 CTGTTTCTGGCCAGTTAGATCTTGTATATGCGATAGTTCGGGATATGACTGCTGCTGGTG 642
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 490 CTGTTTCTGGCCAATTAGATCTTGTGTACGCGATAGTTCGGGATATGACTGCTGCTGGTG 549
Query 643 TTGGTTTGAACCAGTTCTGCTATGCGGGACTCATAACTGCACACTTAAACAAGCAGCCCA 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 550 TTGGTTTGAACCAGTTCTGCTATGCGGGACTCATAACTGCACACTTAAACAAGCAGCCTA 609
Query 703 GACCAGATAATCTTTCTACTAAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAG 762
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GACCAGATAATCTTTCTACCAAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAG 669
Query 763 CAATTGATTCATCAAGGAAGAGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGC 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CAATTGATTCATCAAGGAAGAGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGC 729
Query 823 TGTACAATATTCCAACCGCTGATTATTCCCACAGGACCAGGTTTCTGCAGAGGAATTTGA 882
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 730 TGTACAATATTCCAACCGCTGATTATGCCCACAGGACCAGGTTTCTGCAGAGGAATTTGA 789
Query 883 CTGTGTATCACGTAGCATTCAGTGCTCTCGCTGATCTGAAGGATGTAAAAGCAACGGAAG 942
| || || ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 790 CCGTCTACCACGTAGCATTCAGTGCTCTCGCTGATATAAAGGATGTAAAAGCAACGGAAG 849
Query 943 CTCTTCTTGAGATGCTTAAGAAAGACGGAAAAGATACTGACACTTACTGCATGCTACAAA 1002
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 850 CTCTTCTTGAGATGCTTAAGAAAGACGGAAAAGACACTGACACTTACTGCGTGCTACAAA 909
Query 1003 TCATGAGGTGCTATCTACATTCGCAAGACTTTGAGAATGGTCTCAAACTGTTTCAAGATT 1062
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 910 TTATGAGGTGCTATCTACACTCGCAAGACTTTGAGAATGGTCTCAAAGTGTTTGAAGATT 969
Query 1063 ACATGAGCGCAGACAAAATCCCTGCCATGGAACTATACACGACGCTTATAGAAGGAGCTA 1122
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 970 ACATGAGCGCAGACAAAATCTCTGCCATGGAACTCTACACGACGCTTATAGAAGGAGCTA 1029
Query 1123 TGACAGGATACACCGATAATGGAATGAAGATTGCTCAGGACACTCTGATCCAAATGAACG 1182
|||||||| |||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 1030 TGACAGGACACACCGATAATGGAATGAAGATTGCTCAAGACACTCTGGTCAAAATGAACG 1089
Query 1183 AACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAGCCGCTGGTG 1242
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1090 AACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTATTAAAAGCCGCTGGTG 1149
Query 1243 AAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAGCTCGGAATA 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAGCTCGGAATA 1209
Query 1303 TTCTACCAACACTAGCTGCTGTTGAAGCTTACTACAAGGGCTTGAAAGAACGCGAAATAC 1362
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1210 TTCTACCAACACTAGCTGCTGTTGAAGCTTATTACAAGGGCTTGAAAGAACGTGAAATAC 1269
Query 1363 CAGAGGATGATCCGAGACTGATGTTAGTGACGCGAACATACAATAACTTGCGGCTTAGGG 1422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1270 CAGAGGATGATCCGAGACTGATGTTAGTGACGCGTACATACAATAACTTGCGGCTTAAGG 1329
Query 1423 AAGGGACATTACCTAATAGGCGTTAAAGCAAAGGGACCAAGAGGAAGAAAG 1473
|||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 1330 AAGGGACATTACCTAATAGGCGTTAATG----GG-ACCAAGAGGAAGAAAG 1375
> Ahg888473 jgi|Araly1|888473|Al_scaffold_0007_459
Length=675
Score = 350 bits (189), Expect = 3e-95
Identities = 199/204 (98%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1174 AAATGAACGAACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAG 1233
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AAATGAATGAACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAG 514
Query 1234 CCGCTGGTGAAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAG 1293
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 515 CCGCTGGTGAAAAGACGGGAGGGTACATAGTTGCAAATATGATATGGGATCTGATGCTAG 574
Query 1294 CTCGGAATATTCTACCAACACTAGCTGCTGTTGAAGCTTACTACAAGGGCTTGAAAGAAC 1353
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 575 TTCGGAATATTCTACCAACACTAGCTGCTGTTGAAGCTTATTACAAGGGCTTGAAAGAAC 634
Query 1354 GCGAAATACCAGAGGATGATCCGA 1377
| ||||||||||||||||||||||
Sbjct 635 GTGAAATACCAGAGGATGATCCGA 658
Score = 257 bits (139), Expect = 2e-67
Identities = 141/142 (99%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 723 AAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAGCAATTGATTCATCAAGGAAG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAGCAATTGATTCATCAAGGAAG 165
Query 783 AGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGCTGTACAATATTCCAACCGCT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGCTGTACAATATTCCAACCGCT 225
Query 843 GATTATTCCCACAGGACCAGGT 864
|||||| |||||||||||||||
Sbjct 226 GATTATGCCCACAGGACCAGGT 247
Score = 233 bits (126), Expect = 3e-60
Identities = 148/159 (93%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1008 AGGTGCTATCTACATTCGCAAGACTTTGAGAATGGTCTCAAACTGTTTCAAGATTACATG 1067
|||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 244 AGGTGCTATCTACACTCGGAAGACTTTGAGAATGGTCTCAAATTGTTTGAAGATTACATG 303
Query 1068 AGCGCAGACAAAATCCCTGCCATGGAACTATACACGACGCTTATAGAAGGAGCTATGACA 1127
|||||||| |||||||||||||||||| | |||||||||| |||||||||| ||||||||
Sbjct 304 AGCGCAGATAAAATCCCTGCCATGGAATTCTACACGACGCCTATAGAAGGACCTATGACA 363
Query 1128 GGATACACCGATAATGGAATGAAGATTGCTCAGGACACT 1166
||| |||||||||||||||||||||||||||| ||||||
Sbjct 364 GGACACACCGATAATGGAATGAAGATTGCTCAAGACACT 402
> Ahg491053 jgi|Araly1|491053|fgenesh2_kg.7__486__AT4G35860.1
Length=1045
Score = 176 bits (95), Expect = 5e-43
Identities = 116/126 (92%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 1607 GATTTGATTTCAATTACTTAACCTTGAGAGCTTCATAC-AAAGCGACAACGTTTTAAATA 1665
||||||||||||||| |||||| ||||||||||||| | ||||| |||| ||||||||||
Sbjct 1045 GATTTGATTTCAATTGCTTAACGTTGAGAGCTTCATGCAAAAGCAACAATGTTTTAAATA 986
Query 1666 AGCCAACGCCTGTTTGGTTTATAAAGATCAGCCTGTTCACTCTTAAATGCACCCGTTTGG 1725
||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 985 AGCCAACGCCTGTTTGGTTTATAAAGATCAGGCTGTTCACTCTCAAATGCACCGGTTTGG 926
Query 1726 TTTTTT 1731
|||||
Sbjct 925 GTTTTT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5